| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_002666 |
Definition |
Lactococcus prophage bIL285, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
35538 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
62 |
%GC |
35.18 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_076606.1 | NC_002666_p34 | hypothetical protein | phrog_11381 | unknown function | unknown function | 1 | 13761 | 14060 |
| NP_076598.1 | NC_002666_p26 | hypothetical protein | phrog_8486 | unknown function | unknown function | 1 | 11051 | 11323 |
| NP_076599.1 | NC_002666_p27 | hypothetical protein | phrog_121 | unknown function | unknown function | 1 | 11320 | 11874 |
| NP_076633.1 | NC_002666_p61 | holin | phrog_263 | holin | lysis | 1 | 33944 | 34231 |
| NP_076596.1 | NC_002666_p24 | hypothetical protein | phrog_7446 | unknown function | unknown function | 1 | 10669 | 10839 |
| NP_076614.1 | NC_002666_p42 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 18138 | 19379 |
| NP_076621.1 | NC_002666_p49 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 23003 | 23320 |
| NP_076601.1 | NC_002666_p29 | hypothetical protein | phrog_6209 | unknown function | unknown function | 1 | 12293 | 12790 |
| NP_076616.1 | NC_002666_p44 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 19962 | 21155 |
| NP_076575.1 | NC_002666_p3 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 1943 | 2380 |
| NP_076615.1 | NC_002666_p43 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 19394 | 19990 |
| NP_076573.1 | NC_002666_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 94 | 1218 |
| NP_076583.1 | NC_002666_p11 | hypothetical protein | phrog_5450 | unknown function | unknown function | 1 | 5140 | 5355 |
| NP_076618.1 | NC_002666_p46 | hypothetical protein | phrog_2550 | unknown function | unknown function | 1 | 22060 | 22341 |
| NP_076581.1 | NC_002666_p9 | hypothetical protein | phrog_7263 | unknown function | unknown function | 1 | 4571 | 4765 |
| NP_076608.1 | NC_002666_p36 | hypothetical protein | phrog_28632 | unknown function | unknown function | 1 | 14236 | 14373 |
| NP_076629.1 | NC_002666_p57 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32720 | 33127 |
| NP_076585.1 | NC_002666_p13 | hypothetical protein | phrog_2205 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 5471 | 5989 |
| NP_076591.1 | NC_002666_p19 | hypothetical protein | phrog_22158 | unknown function | unknown function | 1 | 9094 | 9288 |
| NP_076580.1 | NC_002666_p8 | hypothetical protein | phrog_5998 | unknown function | unknown function | 1 | 4430 | 4558 |
| NP_076634.1 | NC_002666_p62 | lysin | phrog_998 | endolysin | lysis | 1 | 34231 | 35010 |
| NP_076587.1 | NC_002666_p15 | SSB protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 6621 | 7073 |
| NP_076592.1 | NC_002666_p20 | hypothetical protein | phrog_3109 | unknown function | unknown function | 1 | 9245 | 9520 |
| NP_076625.1 | NC_002666_p53 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 26794 | 27543 |
| NP_076588.1 | NC_002666_p16 | DNA replication protein | phrog_5708 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 7198 | 7980 |
| NP_076584.1 | NC_002666_p12 | hypothetical protein | phrog_15532 | unknown function | unknown function | 1 | 5243 | 5455 |
| NP_076619.1 | NC_002666_p47 | hypothetical protein | phrog_1951 | head-tail adaptor | connector | 1 | 22352 | 22645 |
| NP_076630.1 | NC_002666_p58 | hypothetical protein | phrog_35009 | holin | lysis | 1 | 33114 | 33452 |
| NP_076576.1 | NC_002666_p4 | repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 2377 | 2919 |
| NP_076605.1 | NC_002666_p33 | hypothetical protein | phrog_2670 | unknown function | unknown function | 1 | 13587 | 13760 |
| NP_076595.1 | NC_002666_p23 | hypothetical protein | phrog_4149 | unknown function | unknown function | 1 | 10089 | 10658 |
| NP_076604.1 | NC_002666_p32 | hypothetical protein | phrog_8350 | unknown function | unknown function | 1 | 13360 | 13545 |
| NP_076627.1 | NC_002666_p55 | hypothetical protein | phrog_6042 | minor head protein | head and packaging | 1 | 30237 | 31838 |
| NP_076607.1 | NC_002666_p35 | hypothetical protein | phrog_25286 | unknown function | unknown function | 1 | 14057 | 14239 |
| NP_076582.1 | NC_002666_p10 | hypothetical protein | phrog_6258 | unknown function | unknown function | -1 | 4762 | 5037 |
| NP_076589.1 | NC_002666_p17 | hypothetical protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 7980 | 8705 |
| NP_076624.1 | NC_002666_p52 | tail protein | phrog_58 | tail length tape measure protein | tail | 1 | 24532 | 26793 |
| NP_076594.1 | NC_002666_p22 | hypothetical protein | phrog_4314 | unknown function | unknown function | 1 | 9920 | 10099 |
| NP_076612.1 | NC_002666_p40 | hypothetical protein | phrog_361 | terminase small subunit | head and packaging | 1 | 16030 | 16398 |
| NP_076609.1 | NC_002666_p37 | hypothetical protein | phrog_10147 | unknown function | unknown function | 1 | 14603 | 14896 |
| NP_076632.1 | NC_002666_p60 | hypothetical protein | phrog_689 | holin | lysis | 1 | 33707 | 33931 |
| NP_076617.1 | NC_002666_p45 | hypothetical protein | phrog_4417 | unknown function | unknown function | 1 | 21210 | 22067 |
| NP_076620.1 | NC_002666_p48 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 22635 | 23006 |
| NP_076611.1 | NC_002666_p39 | hypothetical protein | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 15486 | 15938 |
| NP_076578.1 | NC_002666_p6 | anti-repressor | phrog_373 | anti-repressor | transcription regulation | 1 | 3342 | 4085 |
| NP_076623.1 | NC_002666_p51 | hypothetical protein | phrog_709 | unknown function | unknown function | 1 | 23956 | 24315 |
| NP_076626.1 | NC_002666_p54 | endopeptidase | phrog_1067 | minor head protein | head and packaging | 1 | 27540 | 30224 |
| NP_076602.1 | NC_002666_p30 | hypothetical protein | phrog_9662 | unknown function | unknown function | 1 | 12780 | 13127 |
| NP_076577.1 | NC_002666_p5 | repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 3087 | 3305 |
| NP_076593.1 | NC_002666_p21 | hypothetical protein | phrog_18060 | unknown function | unknown function | 1 | 9632 | 9898 |
| NP_076622.1 | NC_002666_p50 | hypothetical protein | phrog_88 | major tail protein | tail | 1 | 23338 | 23946 |
| NP_076610.1 | NC_002666_p38 | hypothetical protein | phrog_2198 | Alt-like transcription activator | transcription regulation | 1 | 14974 | 15375 |
| NP_076586.1 | NC_002666_p14 | hypothetical protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 5998 | 6621 |
| NP_076613.1 | NC_002666_p41 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 16382 | 18160 |
| NP_076603.1 | NC_002666_p31 | hypothetical protein | phrog_803 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 13149 | 13313 |
| NP_076579.1 | NC_002666_p7 | hypothetical protein | phrog_823 | unknown function | unknown function | 1 | 4098 | 4433 |
| NP_076628.1 | NC_002666_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31831 | 32661 |
| NP_076600.1 | NC_002666_p28 | dUTPase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 11871 | 12290 |
| NP_076631.1 | NC_002666_p59 | hypothetical protein | phrog_2566 | unknown function | unknown function | 1 | 33454 | 33681 |
| NP_076574.1 | NC_002666_p2 | hypothetical protein | phrog_2700 | unknown function | unknown function | -1 | 1341 | 1886 |
| NP_076590.1 | NC_002666_p18 | RusA | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 8702 | 9091 |
| NP_076597.1 | NC_002666_p25 | hypothetical protein | phrog_7240 | unknown function | unknown function | 1 | 10852 | 11058 |