| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_002667 |
Definition |
Lactococcus prophage bIL286, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
41834 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
61 |
%GC |
35.32 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_076693.1 | NC_002667_p59 | hypothetical protein | phrog_2370 | neck passage structure | connector | 1 | 38403 | 39965 |
| NP_076655.1 | NC_002667_p21 | hypothetical protein | phrog_3109 | unknown function | unknown function | 1 | 10328 | 10567 |
| NP_076686.1 | NC_002667_p52 | tail protein | phrog_167 | tail length tape measure protein | tail | 1 | 26180 | 31102 |
| NP_076682.1 | NC_002667_p48 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 23869 | 24375 |
| NP_076667.1 | NC_002667_p33 | hypothetical protein | phrog_2670 | unknown function | unknown function | 1 | 14816 | 15010 |
| NP_076685.1 | NC_002667_p51 | hypothetical protein | phrog_1346 | tail protein | tail | 1 | 25536 | 25955 |
| NP_076645.1 | NC_002667_p11 | hypothetical protein | phrog_5450 | unknown function | unknown function | 1 | 5548 | 5763 |
| NP_076681.1 | NC_002667_p47 | hypothetical protein | phrog_25 | head closure Hc1 | connector | 1 | 23517 | 23867 |
| NP_076652.1 | NC_002667_p18 | hypothetical protein | phrog_2108 | unknown function | unknown function | 1 | 9316 | 9489 |
| NP_076659.1 | NC_002667_p25 | hypothetical protein | phrog_5105 | unknown function | unknown function | 1 | 11747 | 12256 |
| NP_076651.1 | NC_002667_p17 | DnaC | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 8435 | 9319 |
| NP_076660.1 | NC_002667_p26 | hypothetical protein | phrog_3972 | unknown function | unknown function | 1 | 12265 | 12624 |
| NP_076637.1 | NC_002667_p3 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 2286 | 2873 |
| NP_076648.1 | NC_002667_p14 | hypothetical protein | phrog_1097 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 6282 | 7040 |
| NP_076695.1 | NC_002667_p61 | lysin | phrog_998 | endolysin | lysis | 1 | 40290 | 41069 |
| NP_076640.1 | NC_002667_p6 | anti-repressor | phrog_373 | anti-repressor | transcription regulation | 1 | 3823 | 4533 |
| NP_076669.1 | NC_002667_p35 | hypothetical protein | phrog_35454 | unknown function | unknown function | 1 | 15471 | 15830 |
| NP_076670.1 | NC_002667_p36 | hypothetical protein | phrog_2198 | Alt-like transcription activator | transcription regulation | 1 | 15908 | 16330 |
| NP_076678.1 | NC_002667_p44 | protease | phrog_94 | head maturation protease | head and packaging | 1 | 21258 | 21965 |
| NP_076635.1 | NC_002667_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 168 | 1247 |
| NP_076654.1 | NC_002667_p20 | hypothetical protein | phrog_6209 | unknown function | unknown function | 1 | 9841 | 10335 |
| NP_076647.1 | NC_002667_p13 | hypothetical protein | phrog_4729 | unknown function | unknown function | 1 | 5878 | 6273 |
| NP_076676.1 | NC_002667_p42 | hypothetical protein | phrog_1142 | unknown function | unknown function | 1 | 19831 | 20040 |
| NP_076691.1 | NC_002667_p57 | host-specificity | phrog_28865 | tail protein | tail | 1 | 35715 | 38147 |
| NP_076671.1 | NC_002667_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16378 | 16560 |
| NP_076666.1 | NC_002667_p32 | hypothetical protein | phrog_6803 | unknown function | unknown function | 1 | 14676 | 14813 |
| NP_076663.1 | NC_002667_p29 | dUTPase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 13533 | 13952 |
| NP_076680.1 | NC_002667_p46 | hypothetical protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 23219 | 23542 |
| NP_076646.1 | NC_002667_p12 | hypothetical protein | phrog_32073 | unknown function | unknown function | 1 | 5765 | 5863 |
| NP_076684.1 | NC_002667_p50 | hypothetical protein | phrog_88 | major tail protein | tail | 1 | 24798 | 25391 |
| NP_076690.1 | NC_002667_p56 | hypothetical protein | phrog_7926 | helicase subunit of the DNA excision repair complex | DNA, RNA and nucleotide metabolism | 1 | 35564 | 35737 |
| NP_076642.1 | NC_002667_p8 | hypothetical protein | phrog_5998 | unknown function | unknown function | 1 | 4838 | 4966 |
| NP_076636.1 | NC_002667_p2 | hypothetical protein | phrog_32775 | unknown function | unknown function | -1 | 1370 | 2221 |
| NP_076673.1 | NC_002667_p39 | hypothetical protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 16785 | 17300 |
| NP_076668.1 | NC_002667_p34 | hypothetical protein | phrog_37531 | unknown function | unknown function | 1 | 15191 | 15346 |
| NP_076665.1 | NC_002667_p31 | hypothetical protein | phrog_1083 | unknown function | unknown function | 1 | 14322 | 14657 |
| NP_076661.1 | NC_002667_p27 | hypothetical protein | phrog_121 | unknown function | unknown function | 1 | 12617 | 13252 |
| NP_076650.1 | NC_002667_p16 | replication protein | phrog_2562 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 7586 | 8425 |
| NP_076649.1 | NC_002667_p15 | SSB | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 7033 | 7458 |
| NP_076641.1 | NC_002667_p7 | hypothetical protein | phrog_668 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 4546 | 4836 |
| NP_076692.1 | NC_002667_p58 | hypothetical protein | phrog_689 | holin | lysis | 1 | 38167 | 38391 |
| NP_076638.1 | NC_002667_p4 | repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 2883 | 3404 |
| NP_076688.1 | NC_002667_p54 | hypothetical protein | phrog_6253 | minor tail protein | tail | 1 | 32640 | 34427 |
| NP_076677.1 | NC_002667_p43 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 20037 | 21215 |
| NP_076639.1 | NC_002667_p5 | repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 3576 | 3809 |
| NP_076683.1 | NC_002667_p49 | hypothetical protein | phrog_1217 | tail protein | tail | 1 | 24372 | 24767 |
| NP_076674.1 | NC_002667_p40 | hypothetical protein | phrog_83 | terminase small subunit | head and packaging | 1 | 17429 | 17902 |
| NP_076662.1 | NC_002667_p28 | hypothetical protein | phrog_6648 | unknown function | unknown function | 1 | 13249 | 13536 |
| NP_076643.1 | NC_002667_p9 | hypothetical protein | phrog_7263 | unknown function | unknown function | 1 | 4979 | 5173 |
| NP_076679.1 | NC_002667_p45 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 21977 | 23203 |
| NP_076675.1 | NC_002667_p41 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 17880 | 19862 |
| NP_076687.1 | NC_002667_p53 | hypothetical protein | phrog_202 | distal tail protein Dit | tail | 1 | 31105 | 32640 |
| NP_076653.1 | NC_002667_p19 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 9470 | 9844 |
| NP_076644.1 | NC_002667_p10 | hypothetical protein | phrog_6258 | unknown function | unknown function | -1 | 5170 | 5445 |
| NP_076689.1 | NC_002667_p55 | hypothetical protein | phrog_3267 | tail protein | tail | 1 | 34443 | 35564 |
| NP_076658.1 | NC_002667_p24 | hypothetical protein | phrog_4149 | unknown function | unknown function | 1 | 11160 | 11732 |
| NP_076694.1 | NC_002667_p60 | holin | phrog_263 | holin | lysis | 1 | 39991 | 40290 |
| NP_076656.1 | NC_002667_p22 | hypothetical protein | phrog_18060 | unknown function | unknown function | 1 | 10679 | 10969 |
| NP_076672.1 | NC_002667_p38 | hypothetical protein | phrog_23835 | unknown function | unknown function | 1 | 16562 | 16783 |
| NP_076664.1 | NC_002667_p30 | hypothetical protein | phrog_4000 | unknown function | unknown function | 1 | 13956 | 14300 |
| NP_076657.1 | NC_002667_p23 | hypothetical protein | phrog_4314 | unknown function | unknown function | 1 | 10991 | 11170 |