Genomic map of Lactococcus phage bIL309 (NC_002668)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_002668
Definition
Lactococcus prophage bIL309, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
36949
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
35.67
Number of singletons
3
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_076706.1 NC_002668_p11 transcription regulator phrog_4416 transcriptional regulator transcription regulation 1 5594 5767
NP_076698.1 NC_002668_p3 repressor phrog_4 transcriptional repressor transcription regulation -1 2012 2848
NP_076729.1 NC_002668_p34 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision 1 14897 15295
NP_076708.1 NC_002668_p13 hypothetical protein phrog_1227 exonuclease DNA, RNA and nucleotide metabolism 1 6672 7448
NP_076697.1 NC_002668_p2 hypothetical protein phrog_888 unknown function unknown function -1 1350 1928
NP_076731.1 NC_002668_p36 hypothetical protein phrog_2198 Alt-like transcription activator transcription regulation 1 15621 16043
NP_076722.1 NC_002668_p27 hypothetical protein phrog_6803 unknown function unknown function 1 12648 12791
NP_076740.1 NC_002668_p45 hypothetical protein phrog_25 head closure Hc1 connector 1 22609 22944
NP_076739.1 NC_002668_p44 hypothetical protein phrog_40 head-tail adaptor Ad1 connector 1 22317 22622
NP_076712.1 NC_002668_p17 hypothetical protein phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 9497 9907
NP_076735.1 NC_002668_p40 hypothetical protein phrog_502 membrane protein moron, auxiliary metabolic gene and host takeover 1 19176 19340
NP_076723.1 NC_002668_p28 hypothetical protein phrog_2670 unknown function unknown function 1 12788 12970
NP_076702.1 NC_002668_p7 repressor phrog_3 transcriptional repressor transcription regulation 1 4030 4272
NP_076738.1 NC_002668_p43 capsid protein phrog_10 major head protein head and packaging 1 20993 22306
NP_076742.1 NC_002668_p47 hypothetical protein phrog_1217 tail protein tail 1 23423 23818
NP_076699.1 NC_002668_p4 transcription regulator phrog_4416 transcriptional regulator transcription regulation 1 3077 3247
NP_076733.1 NC_002668_p38 hypothetical protein phrog_83 terminase small subunit head and packaging 1 16901 17353
NP_076741.1 NC_002668_p46 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 22941 23426
NP_076737.1 NC_002668_p42 protease phrog_80 head maturation protease head and packaging 1 20416 21003
NP_076724.1 NC_002668_p29 hypothetical protein phrog_8817 unknown function unknown function 1 13152 13337
NP_076719.1 NC_002668_p24 dUTPase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 11729 12148
NP_076717.1 NC_002668_p22 hypothetical protein phrog_8486 unknown function unknown function 1 10909 11181
NP_076734.1 NC_002668_p39 terminase phrog_9 terminase large subunit head and packaging 1 17353 19167
NP_076746.1 NC_002668_p51 tail protein phrog_4070 tail length tape measure protein tail 1 27280 28839
NP_076713.1 NC_002668_p18 hypothetical protein phrog_16633 unknown function unknown function 1 10015 10179
NP_076710.1 NC_002668_p15 DnaC phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 8462 9346
NP_076725.1 NC_002668_p30 hypothetical protein singleton unknown function unknown function 1 13409 13558
NP_076716.1 NC_002668_p21 hypothetical protein singleton unknown function unknown function 1 10749 10916
NP_076747.1 NC_002668_p52 hypothetical protein phrog_202 distal tail protein Dit tail 1 28842 30377
NP_076730.1 NC_002668_p35 hypothetical protein phrog_32755 unknown function unknown function 1 15292 15444
NP_076696.1 NC_002668_p1 integrase phrog_1 integrase integration and excision -1 94 1227
NP_076707.1 NC_002668_p12 RecT phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 5866 6672
NP_076750.1 NC_002668_p55 holin phrog_263 holin lysis 1 35035 35322
NP_076748.1 NC_002668_p53 host-specificity phrog_6468 tail fiber protein; host specificity tail 1 30377 34702
NP_076704.1 NC_002668_p9 hypothetical protein phrog_823 unknown function unknown function 1 5052 5381
NP_076701.1 NC_002668_p6 hypothetical protein phrog_37532 unknown function unknown function 1 3621 3770
NP_076726.1 NC_002668_p31 hypothetical protein phrog_10147 unknown function unknown function 1 13812 14105
NP_076749.1 NC_002668_p54 hypothetical protein phrog_6453 unknown function unknown function 1 34722 35048
NP_076736.1 NC_002668_p41 portal protein phrog_12 portal protein head and packaging 1 19337 20416
NP_076709.1 NC_002668_p14 replication protein phrog_5968 replisome organizer DNA, RNA and nucleotide metabolism 1 7676 8452
NP_076705.1 NC_002668_p10 hypothetical protein singleton unknown function unknown function 1 5382 5504
NP_076727.1 NC_002668_p32 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 14216 14461
NP_076703.1 NC_002668_p8 anti-repressor phrog_130 anti-repressor Ant transcription regulation 1 4284 5039
NP_076745.1 NC_002668_p50 tail protein phrog_21157 minor tail protein tail 1 24999 27305
NP_076744.1 NC_002668_p49 hypothetical protein phrog_1346 tail protein tail 1 24485 24829
NP_076728.1 NC_002668_p33 hypothetical protein phrog_10147 unknown function unknown function 1 14506 14895
NP_076700.1 NC_002668_p5 hypothetical protein phrog_28679 unknown function unknown function 1 3279 3512
NP_076714.1 NC_002668_p19 hypothetical protein phrog_4149 unknown function unknown function 1 10154 10516
NP_076743.1 NC_002668_p48 hypothetical protein phrog_88 major tail protein tail 1 23820 24425
NP_076715.1 NC_002668_p20 hypothetical protein phrog_7446 unknown function unknown function 1 10527 10697
NP_076721.1 NC_002668_p26 hypothetical protein phrog_803 host nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 12435 12599
NP_076732.1 NC_002668_p37 hypothetical protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 16281 16784
NP_076711.1 NC_002668_p16 hypothetical protein phrog_2108 unknown function unknown function 1 9343 9507
NP_076751.1 NC_002668_p56 lysin phrog_998 endolysin lysis 1 35322 36101
NP_076720.1 NC_002668_p25 hypothetical protein phrog_3808 unknown function unknown function 1 12148 12438
NP_076718.1 NC_002668_p23 hypothetical protein phrog_121 unknown function unknown function 1 11178 11732