| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_002668 |
Definition |
Lactococcus prophage bIL309, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
36949 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
35.67 |
Number of singletons |
3 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_076706.1 | NC_002668_p11 | transcription regulator | phrog_4416 | transcriptional regulator | transcription regulation | 1 | 5594 | 5767 |
| NP_076698.1 | NC_002668_p3 | repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 2012 | 2848 |
| NP_076729.1 | NC_002668_p34 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | 1 | 14897 | 15295 |
| NP_076708.1 | NC_002668_p13 | hypothetical protein | phrog_1227 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 6672 | 7448 |
| NP_076697.1 | NC_002668_p2 | hypothetical protein | phrog_888 | unknown function | unknown function | -1 | 1350 | 1928 |
| NP_076731.1 | NC_002668_p36 | hypothetical protein | phrog_2198 | Alt-like transcription activator | transcription regulation | 1 | 15621 | 16043 |
| NP_076722.1 | NC_002668_p27 | hypothetical protein | phrog_6803 | unknown function | unknown function | 1 | 12648 | 12791 |
| NP_076740.1 | NC_002668_p45 | hypothetical protein | phrog_25 | head closure Hc1 | connector | 1 | 22609 | 22944 |
| NP_076739.1 | NC_002668_p44 | hypothetical protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 22317 | 22622 |
| NP_076712.1 | NC_002668_p17 | hypothetical protein | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 9497 | 9907 |
| NP_076735.1 | NC_002668_p40 | hypothetical protein | phrog_502 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 19176 | 19340 |
| NP_076723.1 | NC_002668_p28 | hypothetical protein | phrog_2670 | unknown function | unknown function | 1 | 12788 | 12970 |
| NP_076702.1 | NC_002668_p7 | repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 4030 | 4272 |
| NP_076738.1 | NC_002668_p43 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 20993 | 22306 |
| NP_076742.1 | NC_002668_p47 | hypothetical protein | phrog_1217 | tail protein | tail | 1 | 23423 | 23818 |
| NP_076699.1 | NC_002668_p4 | transcription regulator | phrog_4416 | transcriptional regulator | transcription regulation | 1 | 3077 | 3247 |
| NP_076733.1 | NC_002668_p38 | hypothetical protein | phrog_83 | terminase small subunit | head and packaging | 1 | 16901 | 17353 |
| NP_076741.1 | NC_002668_p46 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 22941 | 23426 |
| NP_076737.1 | NC_002668_p42 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 20416 | 21003 |
| NP_076724.1 | NC_002668_p29 | hypothetical protein | phrog_8817 | unknown function | unknown function | 1 | 13152 | 13337 |
| NP_076719.1 | NC_002668_p24 | dUTPase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 11729 | 12148 |
| NP_076717.1 | NC_002668_p22 | hypothetical protein | phrog_8486 | unknown function | unknown function | 1 | 10909 | 11181 |
| NP_076734.1 | NC_002668_p39 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 17353 | 19167 |
| NP_076746.1 | NC_002668_p51 | tail protein | phrog_4070 | tail length tape measure protein | tail | 1 | 27280 | 28839 |
| NP_076713.1 | NC_002668_p18 | hypothetical protein | phrog_16633 | unknown function | unknown function | 1 | 10015 | 10179 |
| NP_076710.1 | NC_002668_p15 | DnaC | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 8462 | 9346 |
| NP_076725.1 | NC_002668_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13409 | 13558 |
| NP_076716.1 | NC_002668_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10749 | 10916 |
| NP_076747.1 | NC_002668_p52 | hypothetical protein | phrog_202 | distal tail protein Dit | tail | 1 | 28842 | 30377 |
| NP_076730.1 | NC_002668_p35 | hypothetical protein | phrog_32755 | unknown function | unknown function | 1 | 15292 | 15444 |
| NP_076696.1 | NC_002668_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 94 | 1227 |
| NP_076707.1 | NC_002668_p12 | RecT | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 5866 | 6672 |
| NP_076750.1 | NC_002668_p55 | holin | phrog_263 | holin | lysis | 1 | 35035 | 35322 |
| NP_076748.1 | NC_002668_p53 | host-specificity | phrog_6468 | tail fiber protein; host specificity | tail | 1 | 30377 | 34702 |
| NP_076704.1 | NC_002668_p9 | hypothetical protein | phrog_823 | unknown function | unknown function | 1 | 5052 | 5381 |
| NP_076701.1 | NC_002668_p6 | hypothetical protein | phrog_37532 | unknown function | unknown function | 1 | 3621 | 3770 |
| NP_076726.1 | NC_002668_p31 | hypothetical protein | phrog_10147 | unknown function | unknown function | 1 | 13812 | 14105 |
| NP_076749.1 | NC_002668_p54 | hypothetical protein | phrog_6453 | unknown function | unknown function | 1 | 34722 | 35048 |
| NP_076736.1 | NC_002668_p41 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 19337 | 20416 |
| NP_076709.1 | NC_002668_p14 | replication protein | phrog_5968 | replisome organizer | DNA, RNA and nucleotide metabolism | 1 | 7676 | 8452 |
| NP_076705.1 | NC_002668_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5382 | 5504 |
| NP_076727.1 | NC_002668_p32 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 14216 | 14461 |
| NP_076703.1 | NC_002668_p8 | anti-repressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 4284 | 5039 |
| NP_076745.1 | NC_002668_p50 | tail protein | phrog_21157 | minor tail protein | tail | 1 | 24999 | 27305 |
| NP_076744.1 | NC_002668_p49 | hypothetical protein | phrog_1346 | tail protein | tail | 1 | 24485 | 24829 |
| NP_076728.1 | NC_002668_p33 | hypothetical protein | phrog_10147 | unknown function | unknown function | 1 | 14506 | 14895 |
| NP_076700.1 | NC_002668_p5 | hypothetical protein | phrog_28679 | unknown function | unknown function | 1 | 3279 | 3512 |
| NP_076714.1 | NC_002668_p19 | hypothetical protein | phrog_4149 | unknown function | unknown function | 1 | 10154 | 10516 |
| NP_076743.1 | NC_002668_p48 | hypothetical protein | phrog_88 | major tail protein | tail | 1 | 23820 | 24425 |
| NP_076715.1 | NC_002668_p20 | hypothetical protein | phrog_7446 | unknown function | unknown function | 1 | 10527 | 10697 |
| NP_076721.1 | NC_002668_p26 | hypothetical protein | phrog_803 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 12435 | 12599 |
| NP_076732.1 | NC_002668_p37 | hypothetical protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 16281 | 16784 |
| NP_076711.1 | NC_002668_p16 | hypothetical protein | phrog_2108 | unknown function | unknown function | 1 | 9343 | 9507 |
| NP_076751.1 | NC_002668_p56 | lysin | phrog_998 | endolysin | lysis | 1 | 35322 | 36101 |
| NP_076720.1 | NC_002668_p25 | hypothetical protein | phrog_3808 | unknown function | unknown function | 1 | 12148 | 12438 |
| NP_076718.1 | NC_002668_p23 | hypothetical protein | phrog_121 | unknown function | unknown function | 1 | 11178 | 11732 |