Genomic map of Lactococcus phage Tuc2009 (NC_002703)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_002703
Definition
Lactococcus phage Tuc2009, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
38347
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
36.22
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_108728.1 NC_002703_p49 minor structural protein 4 phrog_8913 minor head protein head and packaging 1 31630 32598
NP_108685.1 NC_002703_p6 hypothetical protein phrog_823 unknown function unknown function 1 3996 4331
NP_108710.1 NC_002703_p31 minor structural protein 1 phrog_64 portal protein head and packaging 1 16486 17847
NP_108731.1 NC_002703_p52 hypothetical protein phrog_689 holin lysis 1 34013 34237
NP_108730.1 NC_002703_p51 major structural protein 1 singleton unknown function unknown function 1 33479 34000
NP_108686.1 NC_002703_p7 hypothetical protein phrog_5998 unknown function unknown function 1 4328 4456
NP_108711.1 NC_002703_p32 hypothetical protein phrog_115 minor head protein head and packaging 1 17844 18884
NP_108735.1 NC_002703_p56 hypothetical protein phrog_11039 unknown function unknown function 1 38035 38220
NP_108719.1 NC_002703_p40 hypothetical protein phrog_348 minor head protein head and packaging 1 22696 23004
NP_108718.1 NC_002703_p39 hypothetical protein phrog_132 head-tail adaptor connector 1 22367 22699
NP_108720.1 NC_002703_p41 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 23004 23330
NP_108732.1 NC_002703_p53 minor structural protein 6 phrog_2370 neck passage structure connector 1 34250 36280
NP_108723.1 NC_002703_p44 hypothetical protein phrog_183 tail chaperone protein tail 1 24340 24675
NP_108684.1 NC_002703_p5 major structural protein phrog_373 anti-repressor transcription regulation 1 3267 3983
NP_108725.1 NC_002703_p46 hypothetical protein phrog_58 tail length tape measure protein tail 1 25049 28126
NP_108701.1 NC_002703_p22 hypothetical protein phrog_121 unknown function unknown function 1 11229 11774
NP_108712.1 NC_002703_p33 hypothetical protein phrog_3675 unknown function unknown function 1 18930 19262
NP_108733.1 NC_002703_p54 holin phrog_297 holin lysis 1 36305 36571
NP_108696.1 NC_002703_p17 resolvase phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 9348 9737
NP_108705.1 NC_002703_p26 hypothetical protein phrog_2198 Alt-like transcription activator transcription regulation 1 12722 13144
NP_108726.1 NC_002703_p47 hypothetical protein phrog_33 distal tail protein Dit tail 1 28136 28897
NP_108729.1 NC_002703_p50 minor structural protein 5 phrog_5983 tail protein tail 1 32600 33460
NP_108704.1 NC_002703_p25 hypothetical protein singleton unknown function unknown function 1 12437 12619
NP_108722.1 NC_002703_p43 hypothetical protein phrog_238 major tail protein tail 1 23727 24224
NP_108702.1 NC_002703_p23 dUTPase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 11771 12190
NP_108695.1 NC_002703_p16 methylase phrog_67 DNA methyltransferase other 1 8600 9358
NP_108690.1 NC_002703_p11 hypothetical protein phrog_2205 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 5369 5887
NP_108698.1 NC_002703_p19 hypothetical protein phrog_4314 unknown function unknown function 1 10092 10271
NP_108727.1 NC_002703_p48 minor structural protein 3 phrog_1067 minor head protein head and packaging 1 28897 31617
NP_108700.1 NC_002703_p21 hypothetical protein phrog_98 unknown function unknown function 1 10841 11236
NP_108691.1 NC_002703_p12 hypothetical protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 5896 6519
NP_108697.1 NC_002703_p18 hypothetical protein phrog_3109 unknown function unknown function 1 9741 9980
NP_108709.1 NC_002703_p30 large sub-unit terminase phrog_38 terminase large subunit head and packaging 1 15265 16473
NP_108683.1 NC_002703_p4 cro2009 phrog_3 transcriptional repressor transcription regulation 1 3023 3253
NP_108680.1 NC_002703_p1 integrase phrog_1 integrase integration and excision -1 94 1218
NP_108707.1 NC_002703_p28 hypothetical protein phrog_309 terminase small subunit head and packaging 1 14449 14910
NP_108724.1 NC_002703_p45 hypothetical protein phrog_441 tail assembly chaperone tail 1 24714 25034
NP_108734.1 NC_002703_p55 lysin phrog_291 endolysin lysis 1 36568 37854
NP_108693.1 NC_002703_p14 replication initiation protein phrog_5708 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 7096 7878
NP_108692.1 NC_002703_p13 SSB phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 6519 6971
NP_108689.1 NC_002703_p10 hypothetical protein phrog_32073 unknown function unknown function 1 5255 5353
NP_108713.1 NC_002703_p34 minor structural protein 2 phrog_2932 head scaffolding protein head and packaging 1 19388 20050
NP_108706.1 NC_002703_p27 hypothetical protein phrog_11520 unknown function unknown function 1 13546 14376
NP_108681.1 NC_002703_p2 hypothetical protein phrog_8545 superinfection exclusion Sie-like moron, auxiliary metabolic gene and host takeover -1 1339 1860
NP_108721.1 NC_002703_p42 major structural protein 2 phrog_176 tail terminator connector 1 23327 23716
NP_108682.1 NC_002703_p3 cI2009 phrog_4 transcriptional repressor transcription regulation -1 1921 2781
NP_108687.1 NC_002703_p8 hypothetical protein phrog_7263 unknown function unknown function 1 4469 4663
NP_108694.1 NC_002703_p15 topoisomerase phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 7878 8603
NP_108699.1 NC_002703_p20 hypothetical protein phrog_4149 unknown function unknown function 1 10261 10830
NP_108716.1 NC_002703_p37 major structural protein 4 phrog_544 major head protein head and packaging 1 21488 22183
NP_108708.1 NC_002703_p29 small sub-unit terminase phrog_8148 terminase small subunit head and packaging 1 15070 15264
NP_108717.1 NC_002703_p38 hypothetical protein phrog_2250 unknown function unknown function 1 22183 22383
NP_108688.1 NC_002703_p9 hypothetical protein phrog_5450 unknown function unknown function 1 5038 5253
NP_108715.1 NC_002703_p36 group I intron phrog_559 HNH endonuclease DNA, RNA and nucleotide metabolism 1 20390 21322
NP_108703.1 NC_002703_p24 hypothetical protein phrog_4000 unknown function unknown function 1 12193 12444
NP_108714.1 NC_002703_p35 major structural protein 4 singleton unknown function unknown function 1 20052 20219