| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_002747 |
Definition |
Lactococcus phage TP901-1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
37667 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
35.37 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_112683.1 | NC_002747_p20 | hypothetical protein | phrog_6648 | unknown function | unknown function | 1 | 9888 | 10088 |
| NP_112712.1 | NC_002747_p49 | baseplate protein, experimental | phrog_7911 | tail protein | tail | 1 | 30405 | 30896 |
| NP_112688.1 | NC_002747_p25 | hypothetical protein | phrog_21183 | unknown function | unknown function | 1 | 11403 | 11642 |
| NP_112699.1 | NC_002747_p36 | major head protein, experimental | phrog_544 | major head protein | head and packaging | 1 | 19431 | 20249 |
| NP_112676.1 | NC_002747_p13 | replication protein, experimental | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 6747 | 7565 |
| NP_112717.1 | NC_002747_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34912 | 35247 |
| NP_112713.1 | NC_002747_p50 | hypothetical protein | phrog_689 | holin | lysis | 1 | 30910 | 31134 |
| NP_112709.1 | NC_002747_p46 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 25961 | 26722 |
| NP_112668.1 | NC_002747_p5 | modulator of repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 3357 | 3575 |
| NP_112706.1 | NC_002747_p43 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 22429 | 22764 |
| NP_112692.1 | NC_002747_p29 | activator of late transcription, experimental | phrog_2198 | Alt-like transcription activator | transcription regulation | 1 | 12563 | 12985 |
| NP_112679.1 | NC_002747_p16 | similar toin Lactococcus bacteriophage phi-31.1 | phrog_3109 | unknown function | unknown function | 1 | 8177 | 8416 |
| NP_112716.1 | NC_002747_p53 | lysin, experimental | phrog_291 | endolysin | lysis | 1 | 33438 | 34727 |
| NP_112703.1 | NC_002747_p40 | head to tail joining, | phrog_5 | tail completion or Neck1 protein | connector | 1 | 21070 | 21408 |
| NP_112697.1 | NC_002747_p34 | hypothetical protein | phrog_21609 | unknown function | unknown function | 1 | 18425 | 18652 |
| NP_112689.1 | NC_002747_p26 | similar to ORFX in Lactococcus bacteriophage 712 | phrog_2670 | unknown function | unknown function | 1 | 11639 | 11797 |
| NP_112672.1 | NC_002747_p9 | similar toin Lactococcus lactis bacteriophage r1-t | phrog_4416 | transcriptional regulator | transcription regulation | 1 | 4872 | 5048 |
| NP_112694.1 | NC_002747_p31 | terminase, large subunit, | phrog_38 | terminase large subunit | head and packaging | 1 | 13965 | 15353 |
| NP_112682.1 | NC_002747_p19 | similar toin abiN operon of Lactococcus | phrog_121 | unknown function | unknown function | 1 | 9259 | 9891 |
| NP_112680.1 | NC_002747_p17 | similar toin Lactococcus bacteriophage ul36.1 | phrog_18247 | unknown function | unknown function | 1 | 8522 | 9046 |
| NP_112700.1 | NC_002747_p37 | head to tail joining, | phrog_2250 | unknown function | unknown function | 1 | 20249 | 20446 |
| NP_112685.1 | NC_002747_p22 | hypothetical protein | phrog_4000 | unknown function | unknown function | 1 | 10507 | 10827 |
| NP_112696.1 | NC_002747_p33 | hypothetical protein | phrog_115 | minor head protein | head and packaging | 1 | 16716 | 18410 |
| NP_112701.1 | NC_002747_p38 | DNA packaging, | phrog_132 | head-tail adaptor | connector | 1 | 20433 | 20765 |
| NP_112690.1 | NC_002747_p27 | similar toin the abiN operon of Lactococcus | phrog_10147 | unknown function | unknown function | 1 | 11928 | 12221 |
| NP_112665.1 | NC_002747_p2 | hypothetical protein | phrog_2700 | unknown function | unknown function | -1 | 1608 | 2153 |
| NP_112669.1 | NC_002747_p6 | similar toin Lactococcus lactis bacteriophage phi-31.1 | phrog_373 | anti-repressor | transcription regulation | 1 | 3612 | 4355 |
| NP_112671.1 | NC_002747_p8 | similar toin Lactococcus lactis bacteriophage r1-t | phrog_5257 | unknown function | unknown function | 1 | 4627 | 4875 |
| NP_112698.1 | NC_002747_p35 | scaffolding protein, | phrog_2932 | head scaffolding protein | head and packaging | 1 | 18767 | 19429 |
| NP_112667.1 | NC_002747_p4 | repressor, experimental | phrog_8 | transcriptional regulator | transcription regulation | -1 | 2646 | 3188 |
| NP_112674.1 | NC_002747_p11 | similar toin Lactococcal bacteriophage Tuc2009 | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 5545 | 6168 |
| NP_112695.1 | NC_002747_p32 | portal protein, | phrog_64 | portal protein | head and packaging | 1 | 15354 | 16712 |
| NP_112707.1 | NC_002747_p44 | hypothetical protein | phrog_441 | tail assembly chaperone | tail | 1 | 22803 | 23123 |
| NP_112670.1 | NC_002747_p7 | excisionase, experimental | phrog_12961 | excisionase | integration and excision | 1 | 4368 | 4562 |
| NP_112678.1 | NC_002747_p15 | holiday junction resolvase, | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 7757 | 8176 |
| NP_112673.1 | NC_002747_p10 | similar toin Lactococcus lactis bacteriophage ul36 | phrog_4729 | unknown function | unknown function | 1 | 5147 | 5536 |
| NP_112719.1 | NC_002747_p56 | hypothetical protein | phrog_5978 | unknown function | unknown function | 1 | 36372 | 37628 |
| NP_112664.1 | NC_002747_p1 | integrase, experimental | phrog_95 | integrase | integration and excision | -1 | 30 | 1487 |
| NP_112691.1 | NC_002747_p28 | hypothetical protein | phrog_15805 | unknown function | unknown function | 1 | 12344 | 12487 |
| NP_112686.1 | NC_002747_p23 | similar toin Lactococcus bacteriophage phi-31.1 | phrog_3808 | unknown function | unknown function | 1 | 10820 | 11170 |
| NP_112693.1 | NC_002747_p30 | terminase, small subunit, | phrog_51 | terminase small subunit | head and packaging | 1 | 13562 | 13972 |
| NP_112684.1 | NC_002747_p21 | dUTPase, | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 10085 | 10504 |
| NP_112718.1 | NC_002747_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35302 | 35973 |
| NP_112687.1 | NC_002747_p24 | hypothetical protein | phrog_1455 | unknown function | unknown function | 1 | 11174 | 11350 |
| NP_112666.1 | NC_002747_p3 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 2212 | 2649 |
| NP_112702.1 | NC_002747_p39 | head to tail joining, | phrog_348 | minor head protein | head and packaging | 1 | 20762 | 21073 |
| NP_112708.1 | NC_002747_p45 | tape measure protein, experimental | phrog_58 | tail length tape measure protein | tail | 1 | 23138 | 25951 |
| NP_112714.1 | NC_002747_p51 | neck passage structure, experimental | phrog_2370 | neck passage structure | connector | 1 | 31147 | 33150 |
| NP_112675.1 | NC_002747_p12 | single stranded binding protein, | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 6168 | 6620 |
| NP_112681.1 | NC_002747_p18 | similar toin Lactococcus bacteriophage phi-31.1 | phrog_7240 | unknown function | unknown function | 1 | 9060 | 9266 |
| NP_112705.1 | NC_002747_p42 | major tail protein, experimental | phrog_238 | major tail protein | tail | 1 | 21805 | 22314 |
| NP_112677.1 | NC_002747_p14 | similar toin lactococcal phage ul36.1 | phrog_7699 | unknown function | unknown function | 1 | 7546 | 7767 |
| NP_112710.1 | NC_002747_p47 | tail-host specificity, | phrog_1067 | minor head protein | head and packaging | 1 | 26722 | 29478 |
| NP_112704.1 | NC_002747_p41 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 21405 | 21794 |
| NP_112715.1 | NC_002747_p52 | holin, experimental | phrog_297 | holin | lysis | 1 | 33175 | 33441 |
| NP_112711.1 | NC_002747_p48 | hypothetical protein | phrog_8913 | minor head protein | head and packaging | 1 | 29491 | 30390 |