Genomic map of Lactococcus phage TP901-1 (NC_002747)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_002747
Definition
Lactococcus phage TP901-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
37667
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
35.37
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_112683.1 NC_002747_p20 hypothetical protein phrog_6648 unknown function unknown function 1 9888 10088
NP_112712.1 NC_002747_p49 baseplate protein, experimental phrog_7911 tail protein tail 1 30405 30896
NP_112688.1 NC_002747_p25 hypothetical protein phrog_21183 unknown function unknown function 1 11403 11642
NP_112699.1 NC_002747_p36 major head protein, experimental phrog_544 major head protein head and packaging 1 19431 20249
NP_112676.1 NC_002747_p13 replication protein, experimental phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 6747 7565
NP_112717.1 NC_002747_p54 hypothetical protein singleton unknown function unknown function 1 34912 35247
NP_112713.1 NC_002747_p50 hypothetical protein phrog_689 holin lysis 1 30910 31134
NP_112709.1 NC_002747_p46 hypothetical protein phrog_33 distal tail protein Dit tail 1 25961 26722
NP_112668.1 NC_002747_p5 modulator of repressor phrog_3 transcriptional repressor transcription regulation 1 3357 3575
NP_112706.1 NC_002747_p43 hypothetical protein phrog_183 tail chaperone protein tail 1 22429 22764
NP_112692.1 NC_002747_p29 activator of late transcription, experimental phrog_2198 Alt-like transcription activator transcription regulation 1 12563 12985
NP_112679.1 NC_002747_p16 similar toin Lactococcus bacteriophage phi-31.1 phrog_3109 unknown function unknown function 1 8177 8416
NP_112716.1 NC_002747_p53 lysin, experimental phrog_291 endolysin lysis 1 33438 34727
NP_112703.1 NC_002747_p40 head to tail joining, phrog_5 tail completion or Neck1 protein connector 1 21070 21408
NP_112697.1 NC_002747_p34 hypothetical protein phrog_21609 unknown function unknown function 1 18425 18652
NP_112689.1 NC_002747_p26 similar to ORFX in Lactococcus bacteriophage 712 phrog_2670 unknown function unknown function 1 11639 11797
NP_112672.1 NC_002747_p9 similar toin Lactococcus lactis bacteriophage r1-t phrog_4416 transcriptional regulator transcription regulation 1 4872 5048
NP_112694.1 NC_002747_p31 terminase, large subunit, phrog_38 terminase large subunit head and packaging 1 13965 15353
NP_112682.1 NC_002747_p19 similar toin abiN operon of Lactococcus phrog_121 unknown function unknown function 1 9259 9891
NP_112680.1 NC_002747_p17 similar toin Lactococcus bacteriophage ul36.1 phrog_18247 unknown function unknown function 1 8522 9046
NP_112700.1 NC_002747_p37 head to tail joining, phrog_2250 unknown function unknown function 1 20249 20446
NP_112685.1 NC_002747_p22 hypothetical protein phrog_4000 unknown function unknown function 1 10507 10827
NP_112696.1 NC_002747_p33 hypothetical protein phrog_115 minor head protein head and packaging 1 16716 18410
NP_112701.1 NC_002747_p38 DNA packaging, phrog_132 head-tail adaptor connector 1 20433 20765
NP_112690.1 NC_002747_p27 similar toin the abiN operon of Lactococcus phrog_10147 unknown function unknown function 1 11928 12221
NP_112665.1 NC_002747_p2 hypothetical protein phrog_2700 unknown function unknown function -1 1608 2153
NP_112669.1 NC_002747_p6 similar toin Lactococcus lactis bacteriophage phi-31.1 phrog_373 anti-repressor transcription regulation 1 3612 4355
NP_112671.1 NC_002747_p8 similar toin Lactococcus lactis bacteriophage r1-t phrog_5257 unknown function unknown function 1 4627 4875
NP_112698.1 NC_002747_p35 scaffolding protein, phrog_2932 head scaffolding protein head and packaging 1 18767 19429
NP_112667.1 NC_002747_p4 repressor, experimental phrog_8 transcriptional regulator transcription regulation -1 2646 3188
NP_112674.1 NC_002747_p11 similar toin Lactococcal bacteriophage Tuc2009 phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 5545 6168
NP_112695.1 NC_002747_p32 portal protein, phrog_64 portal protein head and packaging 1 15354 16712
NP_112707.1 NC_002747_p44 hypothetical protein phrog_441 tail assembly chaperone tail 1 22803 23123
NP_112670.1 NC_002747_p7 excisionase, experimental phrog_12961 excisionase integration and excision 1 4368 4562
NP_112678.1 NC_002747_p15 holiday junction resolvase, phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 7757 8176
NP_112673.1 NC_002747_p10 similar toin Lactococcus lactis bacteriophage ul36 phrog_4729 unknown function unknown function 1 5147 5536
NP_112719.1 NC_002747_p56 hypothetical protein phrog_5978 unknown function unknown function 1 36372 37628
NP_112664.1 NC_002747_p1 integrase, experimental phrog_95 integrase integration and excision -1 30 1487
NP_112691.1 NC_002747_p28 hypothetical protein phrog_15805 unknown function unknown function 1 12344 12487
NP_112686.1 NC_002747_p23 similar toin Lactococcus bacteriophage phi-31.1 phrog_3808 unknown function unknown function 1 10820 11170
NP_112693.1 NC_002747_p30 terminase, small subunit, phrog_51 terminase small subunit head and packaging 1 13562 13972
NP_112684.1 NC_002747_p21 dUTPase, phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 10085 10504
NP_112718.1 NC_002747_p55 hypothetical protein singleton unknown function unknown function 1 35302 35973
NP_112687.1 NC_002747_p24 hypothetical protein phrog_1455 unknown function unknown function 1 11174 11350
NP_112666.1 NC_002747_p3 hypothetical protein phrog_87 metallo-protease other -1 2212 2649
NP_112702.1 NC_002747_p39 head to tail joining, phrog_348 minor head protein head and packaging 1 20762 21073
NP_112708.1 NC_002747_p45 tape measure protein, experimental phrog_58 tail length tape measure protein tail 1 23138 25951
NP_112714.1 NC_002747_p51 neck passage structure, experimental phrog_2370 neck passage structure connector 1 31147 33150
NP_112675.1 NC_002747_p12 single stranded binding protein, phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 6168 6620
NP_112681.1 NC_002747_p18 similar toin Lactococcus bacteriophage phi-31.1 phrog_7240 unknown function unknown function 1 9060 9266
NP_112705.1 NC_002747_p42 major tail protein, experimental phrog_238 major tail protein tail 1 21805 22314
NP_112677.1 NC_002747_p14 similar toin lactococcal phage ul36.1 phrog_7699 unknown function unknown function 1 7546 7767
NP_112710.1 NC_002747_p47 tail-host specificity, phrog_1067 minor head protein head and packaging 1 26722 29478
NP_112704.1 NC_002747_p41 hypothetical protein phrog_176 tail terminator connector 1 21405 21794
NP_112715.1 NC_002747_p52 holin, experimental phrog_297 holin lysis 1 33175 33441
NP_112711.1 NC_002747_p48 hypothetical protein phrog_8913 minor head protein head and packaging 1 29491 30390