| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_003050 |
Definition |
Streptococcus pneumoniae bacteriophage MM1 complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
40248 |
Host Name |
Streptococcus pneumoniae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
53 |
%GC |
38.41 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_150181.1 | NC_003050_p52 | holin 2 | phrog_608 | holin | lysis | 1 | 38752 | 39084 |
| NP_150148.1 | NC_003050_p17 | hypothetical protein | phrog_997 | replication terminator | DNA, RNA and nucleotide metabolism | 1 | 8929 | 9363 |
| NP_150170.1 | NC_003050_p41 | minor capsid protein 3 | phrog_556 | minor head protein | head and packaging | 1 | 22822 | 23166 |
| NP_150138.1 | NC_003050_p6 | hypothetical protein | phrog_1456 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 3140 | 3406 |
| NP_150146.1 | NC_003050_p15 | methyltransferase | phrog_16143 | DNA methyltransferase | other | 1 | 7631 | 8056 |
| NP_150139.1 | NC_003050_p7 | hypothetical protein | phrog_2273 | unknown function | unknown function | 1 | 3638 | 3904 |
| NP_150150.1 | NC_003050_p19 | hypothetical protein | phrog_774 | unknown function | unknown function | 1 | 10119 | 10331 |
| NP_150154.1 | NC_003050_p24 | hypothetical protein | phrog_2003 | unknown function | unknown function | 1 | 11816 | 12103 |
| NP_150162.2 | NC_003050_p33 | minor capsid protein 1 | phrog_533 | portal protein | head and packaging | 1 | 17260 | 18828 |
| NP_758431.1 | NC_003050_p30 | hypothetical protein | phrog_5057 | unknown function | unknown function | 1 | 14542 | 15288 |
| NP_758428.1 | NC_003050_p27 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 12770 | 13012 |
| NP_150147.1 | NC_003050_p16 | hypothetical protein | phrog_3947 | unknown function | unknown function | 1 | 8672 | 8875 |
| NP_150151.1 | NC_003050_p20 | hypothetical protein | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 10342 | 10743 |
| NP_150143.1 | NC_003050_p11 | hypothetical protein | phrog_674 | unknown function | unknown function | 1 | 5729 | 6721 |
| NP_150176.1 | NC_003050_p47 | minor structural protein | phrog_202 | distal tail protein Dit | tail | 1 | 28425 | 29939 |
| NP_150182.1 | NC_003050_p53 | N-acetylmuramoyl-L-alanine amidase | phrog_1110 | endolysin | lysis | 1 | 39088 | 40044 |
| NP_150136.1 | NC_003050_p4 | repressor protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 2115 | 2477 |
| NP_150173.1 | NC_003050_p44 | hypothetical protein | phrog_1061 | unknown function | unknown function | 1 | 24084 | 24572 |
| NP_150171.1 | NC_003050_p42 | minor capsid protein 4 | phrog_913 | minor head protein | head and packaging | 1 | 23166 | 23573 |
| NP_150149.1 | NC_003050_p18 | hypothetical protein | phrog_1029 | unknown function | unknown function | 1 | 9365 | 10102 |
| NP_758432.1 | NC_003050_p31 | hypothetical protein | phrog_2412 | unknown function | unknown function | 1 | 15492 | 15947 |
| NP_150180.1 | NC_003050_p51 | holin 1 | phrog_199 | holin | lysis | 1 | 38332 | 38748 |
| NP_150172.1 | NC_003050_p43 | major tail shaft protein | phrog_820 | major tail protein | tail | 1 | 23570 | 24019 |
| NP_150179.1 | NC_003050_p50 | hypothetical protein | phrog_2566 | unknown function | unknown function | 1 | 38053 | 38322 |
| NP_150169.1 | NC_003050_p40 | minor capsid protein 2 | phrog_793 | head-tail adaptor | connector | 1 | 22451 | 22822 |
| NP_150166.1 | NC_003050_p37 | hypothetical protein | phrog_840 | major head protein | head and packaging | 1 | 20902 | 21789 |
| NP_150133.1 | NC_003050_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 103 | 1230 |
| NP_150140.1 | NC_003050_p8 | hypothetical protein | phrog_13947 | unknown function | unknown function | 1 | 3985 | 4509 |
| NP_150144.1 | NC_003050_p13 | SSB protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 6909 | 7454 |
| NP_150165.1 | NC_003050_p36 | scaffolding protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 20321 | 20884 |
| NP_150167.1 | NC_003050_p38 | hypothetical protein | phrog_2910 | unknown function | unknown function | 1 | 21793 | 22026 |
| NP_150164.1 | NC_003050_p35 | hypothetical protein | phrog_581 | minor head protein | head and packaging | 1 | 19031 | 20182 |
| NP_150155.1 | NC_003050_p25 | hypothetical protein | phrog_4667 | unknown function | unknown function | 1 | 12103 | 12276 |
| NP_150145.1 | NC_003050_p14 | DNA methylase | phrog_116 | DNA methyltransferase | other | 1 | 7480 | 8637 |
| NP_758426.1 | NC_003050_p12 | hypothetical protein | phrog_4139 | unknown function | unknown function | 1 | 6743 | 6919 |
| NP_150175.1 | NC_003050_p46 | minor tail protein | phrog_1686 | tail length tape measure protein | tail | 1 | 25147 | 28428 |
| NP_758429.1 | NC_003050_p28 | hypothetical protein | phrog_3511 | unknown function | unknown function | 1 | 13009 | 13401 |
| NP_150142.1 | NC_003050_p10 | Erf protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 5019 | 5726 |
| NP_758427.1 | NC_003050_p21 | hypothetical protein | phrog_4706 | unknown function | unknown function | 1 | 10745 | 10942 |
| NP_150177.1 | NC_003050_p48 | anti-receptor protein | phrog_588 | tail fiber protein and host specificity | tail | 1 | 29941 | 35910 |
| NP_150135.1 | NC_003050_p3 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 1713 | 2093 |
| NP_758425.1 | NC_003050_p9 | hypothetical protein | phrog_2715 | unknown function | unknown function | 1 | 4561 | 5013 |
| NP_150137.1 | NC_003050_p5 | hypothetical protein | phrog_1337 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 2774 | 2965 |
| NP_150156.1 | NC_003050_p26 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 12291 | 12710 |
| NP_150174.1 | NC_003050_p45 | hypothetical protein | phrog_706 | unknown function | unknown function | 1 | 24585 | 25154 |
| NP_150163.1 | NC_003050_p34 | hypothetical protein | phrog_3755 | unknown function | unknown function | 1 | 18761 | 18988 |
| NP_150152.1 | NC_003050_p22 | hypothetical protein | phrog_834 | unknown function | unknown function | 1 | 11000 | 11317 |
| NP_150161.1 | NC_003050_p32 | large terminase subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 15937 | 17247 |
| NP_150153.1 | NC_003050_p23 | hypothetical protein | phrog_121 | unknown function | unknown function | 1 | 11319 | 11816 |
| NP_150178.1 | NC_003050_p49 | hypothetical protein | phrog_372 | tail protein | tail | 1 | 35921 | 37999 |
| NP_758430.1 | NC_003050_p29 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 13467 | 14561 |
| NP_150134.1 | NC_003050_p2 | hypothetical protein | phrog_9859 | unknown function | unknown function | -1 | 1349 | 1699 |
| NP_150168.1 | NC_003050_p39 | hypothetical protein | phrog_541 | head-tail adaptor | connector | 1 | 22069 | 22461 |