Genomic map of Pseudomonas phage phiCTX (Pseudomonas aeruginosa phage phi CTX) (NC_003278)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_003278
Definition
Pseudomonas phage phiCTX, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Peduovirinae; Citexvirus.
DB of origin
REFSEQ
Length
35580
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
47
%GC
62.62
Number of singletons
8
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_490600.1 NC_003278_p3 terminase ATPase subunit phrog_2 terminase large subunit head and packaging -1 2466 4250
NP_490628.1 NC_003278_p31 hypothetical protein singleton unknown function unknown function -1 23663 24550
NP_490622.1 NC_003278_p25 major tail tube protein phrog_55 head closure connector 1 18196 18711
NP_490607.1 NC_003278_p10 hypothetical protein phrog_198 holin lysis 1 7961 8314
NP_490605.1 NC_003278_p8 hypothetical protein phrog_3954 unknown function unknown function 1 7530 7727
NP_490609.1 NC_003278_p12 hypothetical protein phrog_1224 endolysin head and packaging 1 8585 9391
NP_490613.1 NC_003278_p16 predicted tail completion phrog_26 tail completion or Neck1 protein connector 1 10456 10926
NP_490641.1 NC_003278_p44 hypothetical protein phrog_116 DNA methyltransferase other 1 31617 33395
NP_490634.1 NC_003278_p37 hypothetical protein phrog_603 transcriptional regulator transcription regulation 1 27036 27329
NP_490631.1 NC_003278_p34 hypothetical protein singleton unknown function unknown function -1 25621 25737
NP_490629.1 NC_003278_p32 hypothetical protein singleton unknown function unknown function -1 24665 25177
NP_490620.1 NC_003278_p23 hypothetical protein phrog_188 tail fiber assembly protein tail 1 16427 16873
NP_490617.1 NC_003278_p20 baseplate assembly protein phrog_6 baseplate wedge subunit tail 1 12678 13592
NP_490611.1 NC_003278_p14 hypothetical protein phrog_952 Rz-like spanin lysis 1 9674 9943
NP_490604.1 NC_003278_p7 predicted capsid completion protein phrog_71 head-tail adaptor Ad1 connector 1 7069 7530
NP_490627.1 NC_003278_p30 tail protein phrog_52 tail protein tail 1 22367 23641
NP_490633.1 NC_003278_p36 hypothetical protein phrog_101 CII-like transcriptional activator transcription regulation 1 26569 27039
NP_490644.1 NC_003278_p47 integrase phrog_1 integrase integration and excision 1 33616 34785
NP_490618.1 NC_003278_p21 hypothetical protein phrog_48 tail protein tail 1 13592 14128
NP_490616.1 NC_003278_p19 baseplate wedge subunit phrog_43 baseplate wedge subunit tail 1 12337 12681
NP_490602.1 NC_003278_p5 capsid protein phrog_70 major head protein head and packaging 1 5242 6258
NP_490636.1 NC_003278_p39 hypothetical protein phrog_3967 unknown function unknown function 1 27747 27980
NP_490612.1 NC_003278_p15 predicted tail completion phrog_65 tail terminator connector 1 9927 10463
NP_490601.1 NC_003278_p4 capsid-scaffolding protein phrog_73 head scaffolding protein head and packaging 1 4385 5206
NP_490632.1 NC_003278_p35 hypothetical protein singleton unknown function unknown function 1 25824 26006
NP_490603.1 NC_003278_p6 terminase endonuclease subunit phrog_74 terminase small subunit head and packaging 1 6264 6965
NP_490640.1 NC_003278_p43 hypothetical protein phrog_10699 unknown function unknown function 1 31373 31624
NP_490643.1 NC_003278_p46 hypothetical protein singleton unknown function unknown function -1 33562 33795
NP_490624.1 NC_003278_p27 hypothetical protein phrog_6416 tail protein tail 1 19101 19220
NP_490642.1 NC_003278_p45 hypothetical protein singleton unknown function unknown function 1 33407 33514
NP_490623.1 NC_003278_p26 hypothetical protein phrog_103 tail protein tail 1 18766 19092
NP_490608.1 NC_003278_p11 hypothetical protein phrog_217 holin lysis 1 8316 8588
NP_490625.1 NC_003278_p28 hypothetical protein phrog_28 tail length tape measure protein tail 1 19210 21924
NP_490610.1 NC_003278_p13 predicted lysis phrog_89 Rz-like spanin lysis 1 9388 9849
NP_490615.1 NC_003278_p18 predicted baseplate phrog_11 baseplate spike tail 1 11768 12340
NP_490635.1 NC_003278_p38 hypothetical protein singleton unknown function unknown function 1 27310 27702
NP_490621.1 NC_003278_p24 major tail sheath protein phrog_23 tail sheath tail 1 16964 18139
NP_490606.1 NC_003278_p9 hypothetical protein phrog_46 baseplate hub tail 1 7727 7936
NP_490599.1 NC_003278_p2 portal vertex protein phrog_68 portal protein head and packaging -1 1417 2469
NP_490630.1 NC_003278_p33 hypothetical protein phrog_26546 unknown function unknown function -1 25218 25568
NP_490639.1 NC_003278_p42 DksA-like zinc finger domain containing protein phrog_54 DksA-like zinc-finger protein other 1 31107 31313
NP_490598.1 NC_003278_p1 cytotoxin phrog_27176 toxin moron, auxiliary metabolic gene and host takeover 1 362 1222
NP_490619.1 NC_003278_p22 hypothetical protein phrog_5181 unknown function unknown function 1 14130 16418
NP_490637.1 NC_003278_p40 hypothetical protein phrog_1139 DNA primase DNA, RNA and nucleotide metabolism 1 28010 30697
NP_490638.1 NC_003278_p41 hypothetical protein phrog_6694 unknown function unknown function 1 30742 31095
NP_490626.1 NC_003278_p29 hypothetical protein phrog_76 tail protein tail 1 21930 22370
NP_490614.1 NC_003278_p17 hypothetical protein singleton unknown function unknown function 1 10960 11688