Genomic map of Staphylococcus virus phiETA (Bacteriophage phi ETA) (NC_003288)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_003288
Definition
Staphylococcus phage phiETA, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus.
DB of origin
REFSEQ
Length
43081
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
66
%GC
35.43
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_510923.1 NC_003288_p29 similar to phage phi PVL ORF51 phrog_258 virulence associated other 1 13627 14046
NP_510900.1 NC_003288_p6 similar to phage phi PVL repressor phrog_4 transcriptional repressor transcription regulation -1 2342 3058
NP_510959.1 NC_003288_p65 similar to phage phi PVL amidase phrog_489 endolysin lysis 1 40341 41753
NP_510895.1 NC_003288_p1 similar to phage phi 11 integrase phrog_1 integrase integration and excision -1 53 1102
NP_510958.1 NC_003288_p64 similar to phage phi PVL holin phrog_263 holin lysis 1 40079 40354
NP_510898.1 NC_003288_p4 hypothetical protein phrog_5192 unknown function unknown function -1 2002 2187
NP_510924.1 NC_003288_p30 similar to phage phi PVL ORF52 phrog_16685 unknown function unknown function 1 14039 14191
NP_510948.1 NC_003288_p54 hypothetical protein phrog_33 distal tail protein Dit tail 1 28900 29835
NP_510899.1 NC_003288_p5 hypothetical protein phrog_6385 unknown function unknown function -1 2184 2330
NP_510951.1 NC_003288_p57 similar to phage phi105 ORF42 phrog_257 minor tail protein tail 1 33643 35466
NP_510896.1 NC_003288_p2 hypothetical protein phrog_7090 unknown function unknown function -1 1160 1531
NP_510920.1 NC_003288_p26 hypothetical protein phrog_299 unknown function unknown function 1 12729 12914
NP_510954.1 NC_003288_p60 hypothetical protein phrog_276 unknown function unknown function 1 36061 36360
NP_510934.1 NC_003288_p40 similar to phage O1205( large subunit terminase) phrog_2 terminase large subunit head and packaging 1 17506 18723
NP_510936.1 NC_003288_p42 head morphogenesis phrog_115 minor head protein head and packaging 1 20112 21074
NP_510926.1 NC_003288_p32 similar to phage phi PVL ORF52 phrog_266 unknown function unknown function 1 14465 14707
NP_510952.1 NC_003288_p58 hypothetical protein phrog_300 tail fiber protein tail 1 35466 35843
NP_510937.1 NC_003288_p43 similar to phage phig1e RORF204 (minor capsid protein) phrog_194 head scaffolding protein head and packaging 1 21172 21768
NP_510908.1 NC_003288_p14 similar to phage phi PVL ORF38 phrog_369 unknown function unknown function 1 6681 6842
NP_510960.1 NC_003288_p66 Staphylococcus aureus exfoliative toxin A phrog_13651 unknown function unknown function 1 41879 42721
NP_510950.1 NC_003288_p56 similar to phage LL-H gp89 phrog_287 minor tail protein tail 1 31745 33643
NP_510947.1 NC_003288_p53 similar to phage bIL170 l16 phrog_58 tail length tape measure protein tail 1 25916 28885
NP_510946.1 NC_003288_p52 hypothetical protein phrog_1404 tail protein tail 1 25572 25913
NP_510918.1 NC_003288_p24 hypothetical protein phrog_433 unknown function unknown function 1 12089 12310
NP_510922.1 NC_003288_p28 hypothetical protein phrog_987 unknown function unknown function 1 13442 13612
NP_510940.1 NC_003288_p46 head morphogenesis phrog_1161 head-tail adaptor connector 1 22956 23270
NP_510956.1 NC_003288_p62 hypothetical protein phrog_1125 tail fiber protein tail 1 38384 39622
NP_510919.1 NC_003288_p25 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 12320 12724
NP_510931.1 NC_003288_p37 similar to phage phi 11 rinB phrog_152 RinB-like transcriptional activator transcription regulation 1 16101 16274
NP_510917.1 NC_003288_p23 similar to Escherichia coli DnaC phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 11142 11921
NP_510930.1 NC_003288_p36 hypothetical protein phrog_301 secreted protein other 1 15718 16104
NP_510935.1 NC_003288_p41 similar to phage Spp1(portal protein) phrog_64 portal protein head and packaging 1 18704 20155
NP_510901.1 NC_003288_p7 similar to phage O1205 ORF5 phrog_3 transcriptional repressor transcription regulation 1 3222 3464
NP_510942.1 NC_003288_p48 similar to phage Spp1 gp16.1 phrog_5 tail completion or Neck1 protein connector 1 23648 23998
NP_510911.1 NC_003288_p17 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 7420 8199
NP_510909.1 NC_003288_p15 similar to phage phi PVL ORF39 phrog_401 unknown function unknown function 1 6936 7196
NP_510921.1 NC_003288_p27 similar to phage phi PVL ORF50 phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 12915 13442
NP_510943.1 NC_003288_p49 similar to phage Spp1 gp17 phrog_176 tail terminator connector 1 24011 24448
NP_510941.1 NC_003288_p47 similar to phage Spp1 gp16 phrog_25 head closure Hc1 connector 1 23263 23598
NP_510944.1 NC_003288_p50 similar to phage Spp1 gp17.1 phrog_238 major tail protein tail 1 24435 24995
NP_510913.1 NC_003288_p19 hypothetical protein singleton unknown function unknown function 1 8568 8888
NP_510957.1 NC_003288_p63 similar to phage phi 11 orf1 phrog_1262 unknown function unknown function 1 39628 40023
NP_510902.1 NC_003288_p8 hypothetical protein phrog_1534 unknown function unknown function 1 3480 3659
NP_510932.1 NC_003288_p38 similar tophage phi PVL ORF61 phrog_1058 unknown function unknown function 1 16275 16676
NP_510904.1 NC_003288_p10 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 4687 4872
NP_510910.1 NC_003288_p16 hypothetical protein phrog_946 unknown function unknown function 1 7206 7427
NP_510912.1 NC_003288_p18 hypothetical protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 8228 8779
NP_510929.1 NC_003288_p35 similar to phage phi PVL ORF55 phrog_278 transcriptional regulator transcription regulation 1 15515 15721
NP_510905.1 NC_003288_p11 similar to phage phi PVL antirepressor phrog_63 anti-repressor Ant transcription regulation 1 4874 5626
NP_510938.1 NC_003288_p44 similar to phage B1 major head protein phrog_544 major head protein head and packaging 1 21789 22613
NP_510939.1 NC_003288_p45 similar to phage A118 gp7 phrog_390 Arc-like repressor transcription regulation 1 22630 22956
NP_510955.1 NC_003288_p61 similar to phage phi187 cell hydrolase Ply187 phrog_759 tail associated cell-wall hydrolase other 1 36497 38371
NP_510925.1 NC_003288_p31 hypothetical protein phrog_1034 unknown function unknown function 1 14188 14472
NP_510897.1 NC_003288_p3 hypothetical protein phrog_5881 unknown function unknown function -1 1521 1946
NP_510945.1 NC_003288_p51 similar to phage Spp1 gp17.5 phrog_183 tail chaperone protein tail 1 25057 25551
NP_510933.1 NC_003288_p39 hypothetical protein phrog_1595 terminase small subunit head and packaging 1 17151 17522
NP_510927.1 NC_003288_p33 hypothetical protein phrog_14308 unknown function unknown function 1 14707 14949
NP_510907.1 NC_003288_p13 hypothetical protein phrog_989 unknown function unknown function 1 6467 6688
NP_510916.1 NC_003288_p22 similar to phage r1t ORF11 phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 10361 11131
NP_510928.1 NC_003288_p34 hypothetical protein phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 14942 15478
NP_510903.1 NC_003288_p9 hypothetical protein phrog_4989 unknown function unknown function -1 3760 4242
NP_510949.1 NC_003288_p55 similar to phage phig1e RORF372 phrog_663 minor head protein head and packaging 1 29846 31732
NP_510953.1 NC_003288_p59 similar to phage phi105 ORF44 phrog_134 unknown function unknown function 1 35847 36020
NP_510914.1 NC_003288_p20 similar to phage phig1e RORF242 phrog_398 unknown function unknown function 1 8792 9463
NP_510915.1 NC_003288_p21 hypothetical protein phrog_19142 unknown function unknown function -1 9541 10296
NP_510906.1 NC_003288_p12 hypothetical protein phrog_7948 unknown function unknown function -1 5731 6396