| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_003309 |
Definition |
Burkholderia phage phiE125, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Stanholtvirus. |
DB of origin |
REFSEQ |
Length |
53373 |
Host Name |
Burkholderia thailandensis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
71 |
%GC |
61.19 |
Number of singletons |
8 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_536384.1 | NC_003309_p28 | hypothetical protein | phrog_8011 | unknown function | unknown function | 1 | 23815 | 24693 |
| NP_536420.1 | NC_003309_p64 | hypothetical protein | phrog_131 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 48843 | 49181 |
| NP_536358.1 | NC_003309_p2 | terminase (large subunit) | phrog_9 | terminase large subunit | head and packaging | 1 | 541 | 2253 |
| NP_536377.1 | NC_003309_p21 | tail tip fiber protein | phrog_31 | central tail fiber J | tail | 1 | 17143 | 20448 |
| NP_536413.1 | NC_003309_p57 | DNA cytosine methylase | phrog_67 | DNA methyltransferase | other | 1 | 43452 | 44588 |
| NP_536367.1 | NC_003309_p11 | hypothetical protein | phrog_347 | tail terminator | connector | 1 | 7630 | 7977 |
| NP_536357.1 | NC_003309_p1 | terminase (small subunit) | phrog_83 | terminase small subunit | head and packaging | 1 | 46 | 531 |
| NP_536405.1 | NC_003309_p49 | hypothetical protein | phrog_20909 | unknown function | unknown function | -1 | 39862 | 39993 |
| NP_536373.1 | NC_003309_p17 | hypothetical protein | phrog_12499 | tail fiber protein | tail | 1 | 13695 | 15083 |
| NP_536426.1 | NC_003309_p70 | hypothetical protein | phrog_1213 | RelE-like toxin | moron, auxiliary metabolic gene and host takeover | -1 | 52600 | 52857 |
| NP_536366.1 | NC_003309_p10 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7211 | 7633 |
| NP_536415.1 | NC_003309_p59 | chromosome partitioning protein | phrog_1033 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 45618 | 46439 |
| NP_536417.1 | NC_003309_p61 | hypothetical protein | phrog_678 | replication initiation O-like | DNA, RNA and nucleotide metabolism | 1 | 46850 | 47842 |
| NP_536380.1 | NC_003309_p24 | class II holin | phrog_20 | holin | lysis | 1 | 21536 | 21748 |
| NP_536361.1 | NC_003309_p5 | capsid assembly protein/protease | phrog_53 | head maturation protease | head and packaging | 1 | 3759 | 4664 |
| NP_536364.1 | NC_003309_p8 | hypothetical protein | phrog_442 | head-tail adaptor | connector | 1 | 6326 | 6892 |
| NP_536404.1 | NC_003309_p48 | hypothetical protein | phrog_15089 | unknown function | unknown function | -1 | 39170 | 39586 |
| NP_536378.1 | NC_003309_p22 | hypothetical protein | phrog_2427 | unknown function | unknown function | 1 | 20445 | 20759 |
| NP_536398.1 | NC_003309_p42 | hypothetical protein | phrog_20322 | unknown function | unknown function | -1 | 35192 | 35863 |
| NP_536408.1 | NC_003309_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40747 | 40935 |
| NP_536397.1 | NC_003309_p41 | hypothetical protein | phrog_1672 | unknown function | unknown function | -1 | 34794 | 35195 |
| NP_536385.1 | NC_003309_p29 | hypothetical protein | phrog_5348 | unknown function | unknown function | 1 | 24875 | 25435 |
| NP_536427.1 | NC_003309_p71 | class I holin | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 52916 | 53272 |
| NP_536409.1 | NC_003309_p53 | repressor protein | phrog_12107 | transcriptional repressor | transcription regulation | -1 | 41163 | 41555 |
| NP_536389.1 | NC_003309_p33 | hypothetical protein | phrog_1599 | unknown function | unknown function | 1 | 28145 | 28816 |
| NP_536425.1 | NC_003309_p69 | helix-turn-helix transcriptional regulator | phrog_7241 | transcriptional regulator | transcription regulation | -1 | 52217 | 52603 |
| NP_536372.1 | NC_003309_p16 | minor tail protein | phrog_14 | minor tail protein | tail | 1 | 13348 | 13686 |
| NP_536418.1 | NC_003309_p62 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 48035 | 48388 |
| NP_536394.1 | NC_003309_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32128 | 33180 |
| NP_536406.1 | NC_003309_p50 | hypothetical protein | phrog_16318 | unknown function | unknown function | -1 | 40003 | 40278 |
| NP_536382.1 | NC_003309_p26 | hypothetical protein | phrog_2466 | Rz-like spanin | lysis | 1 | 22227 | 22775 |
| NP_536395.1 | NC_003309_p39 | transposase OrfB | phrog_157 | transposase | integration and excision | -1 | 33350 | 34204 |
| NP_536369.1 | NC_003309_p13 | tail assembly chaperone proteing | phrog_344 | tail assembly chaperone | tail | 1 | 8519 | 8989 |
| NP_536379.1 | NC_003309_p23 | hypothetical protein | phrog_4062 | unknown function | unknown function | 1 | 20759 | 21493 |
| NP_536424.1 | NC_003309_p68 | hypothetical protein | phrog_38563 | unknown function | unknown function | 1 | 50482 | 51876 |
| NP_536416.1 | NC_003309_p60 | hypothetical protein | phrog_4617 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 46436 | 46696 |
| NP_536365.1 | NC_003309_p9 | hypothetical protein | phrog_25 | head closure Hc1 | connector | 1 | 6892 | 7218 |
| NP_536421.1 | NC_003309_p65 | hypothetical protein | phrog_12620 | unknown function | unknown function | 1 | 49172 | 49516 |
| NP_536393.1 | NC_003309_p37 | hypothetical protein | phrog_2045 | unknown function | unknown function | -1 | 31139 | 32131 |
| NP_536401.1 | NC_003309_p45 | hypothetical protein | phrog_32105 | unknown function | unknown function | -1 | 37667 | 37816 |
| NP_536396.1 | NC_003309_p40 | ISBt3 transposase subunit protein | phrog_151 | transposase | integration and excision | -1 | 34261 | 34539 |
| NP_536363.1 | NC_003309_p7 | hypothetical protein | phrog_38773 | unknown function | unknown function | 1 | 6134 | 6319 |
| NP_536399.1 | NC_003309_p43 | hypothetical protein | phrog_2600 | unknown function | unknown function | -1 | 35877 | 36671 |
| NP_536381.1 | NC_003309_p25 | lysozyme | phrog_7 | endolysin | lysis | 1 | 21826 | 22230 |
| NP_536362.1 | NC_003309_p6 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4767 | 6074 |
| NP_536422.1 | NC_003309_p66 | hypothetical protein | phrog_12352 | unknown function | unknown function | 1 | 49492 | 49752 |
| NP_536370.1 | NC_003309_p14 | hypothetical protein | phrog_337 | tail protein | tail | 1 | 8989 | 9273 |
| NP_536423.1 | NC_003309_p67 | hypothetical protein | phrog_17923 | unknown function | unknown function | 1 | 49761 | 50408 |
| NP_536412.1 | NC_003309_p56 | hypothetical protein | phrog_101 | CII-like transcriptional activator | transcription regulation | 1 | 43007 | 43447 |
| NP_536411.1 | NC_003309_p55 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42567 | 42821 |
| NP_536376.1 | NC_003309_p20 | tail component protein | phrog_32 | tail assembly protein | tail | 1 | 16562 | 17146 |
| NP_536414.1 | NC_003309_p58 | PAPS reductase/sulfotransferase | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | 1 | 44585 | 45583 |
| NP_536403.1 | NC_003309_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38919 | 39173 |
| NP_536386.1 | NC_003309_p30 | hypothetical protein | phrog_7616 | unknown function | unknown function | 1 | 25432 | 26166 |
| NP_536375.1 | NC_003309_p19 | tail component protein | phrog_30 | minor tail protein | tail | 1 | 15783 | 16565 |
| NP_536419.1 | NC_003309_p63 | hypothetical protein | phrog_20293 | unknown function | unknown function | 1 | 48385 | 48741 |
| NP_536371.1 | NC_003309_p15 | tail length tape measure protein | phrog_339 | tail length tape measure protein | tail | 1 | 9287 | 13351 |
| NP_536388.1 | NC_003309_p32 | hypothetical protein | phrog_17852 | unknown function | unknown function | -1 | 27418 | 28059 |
| NP_536410.1 | NC_003309_p54 | hypothetical protein | phrog_26982 | unknown function | unknown function | 1 | 42006 | 42338 |
| NP_536400.1 | NC_003309_p44 | hypothetical protein | phrog_200 | lipoprotein | other | -1 | 36858 | 37670 |
| NP_536391.1 | NC_003309_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30292 | 30609 |
| NP_536407.1 | NC_003309_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40519 | 40662 |
| NP_536390.1 | NC_003309_p34 | site-specific integrase | phrog_1 | integrase | integration and excision | -1 | 29192 | 30292 |
| NP_536392.1 | NC_003309_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30642 | 31142 |
| NP_536360.1 | NC_003309_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2440 | 3699 |
| NP_536368.1 | NC_003309_p12 | major tail subunit protein | phrog_158 | major tail protein | tail | 1 | 8039 | 8497 |
| NP_536359.1 | NC_003309_p3 | hypothetical protein | phrog_502 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 2250 | 2435 |
| NP_536387.1 | NC_003309_p31 | hypothetical protein | phrog_6456 | unknown function | unknown function | 1 | 26194 | 27285 |
| NP_536383.1 | NC_003309_p27 | DNA adenine methylase | phrog_56 | DNA methyltransferase | other | 1 | 22918 | 23706 |
| NP_536374.1 | NC_003309_p18 | minor tail protein | phrog_18 | minor tail protein | tail | 1 | 15080 | 15763 |
| NP_536402.1 | NC_003309_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38065 | 38718 |