| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_003387 |
Definition |
Mycobacterium phage TM4, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus. |
DB of origin |
REFSEQ |
Length |
52797 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
89 |
%GC |
68.11 |
Number of singletons |
7 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_569807.1 | NC_003387_p71 | hypothetical protein | phrog_15365 | unknown function | unknown function | 1 | 45216 | 45545 |
| NP_569765.1 | NC_003387_p29 | hypothetical protein | phrog_102 | endolysin | lysis | 1 | 24984 | 26186 |
| NP_569771.1 | NC_003387_p35 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 27808 | 28992 |
| NP_569810.1 | NC_003387_p74 | hypothetical protein | phrog_1338 | unknown function | unknown function | 1 | 46904 | 47173 |
| NP_569748.1 | NC_003387_p12 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 7766 | 8017 |
| NP_569799.1 | NC_003387_p63 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 40098 | 40643 |
| NP_569754.1 | NC_003387_p18 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 13970 | 15097 |
| NP_569823.1 | NC_003387_p87 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 51883 | 52179 |
| NP_569762.1 | NC_003387_p26 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 22832 | 23212 |
| NP_569824.1 | NC_003387_p88 | hypothetical protein | phrog_15574 | unknown function | unknown function | 1 | 52192 | 52362 |
| NP_569776.1 | NC_003387_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30913 | 31248 |
| NP_569796.1 | NC_003387_p60 | hypothetical protein | phrog_13625 | unknown function | unknown function | 1 | 39374 | 39679 |
| NP_569786.1 | NC_003387_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34748 | 34903 |
| NP_569737.1 | NC_003387_p1 | hypothetical protein | phrog_5391 | unknown function | unknown function | 1 | 100 | 234 |
| NP_569755.1 | NC_003387_p19 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 15094 | 16851 |
| NP_569787.1 | NC_003387_p51 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 34900 | 35526 |
| NP_569756.1 | NC_003387_p20 | hypothetical protein | phrog_1697 | minor tail protein | tail | 1 | 16851 | 17315 |
| NP_569788.1 | NC_003387_p52 | hypothetical protein | phrog_3186 | unknown function | unknown function | 1 | 35523 | 35912 |
| NP_569774.1 | NC_003387_p38 | hypothetical protein | phrog_4112 | unknown function | unknown function | 1 | 29584 | 29844 |
| NP_569760.1 | NC_003387_p24 | hypothetical protein | phrog_3901 | unknown function | unknown function | 1 | 21138 | 21422 |
| NP_569820.1 | NC_003387_p84 | hypothetical protein | phrog_15374 | unknown function | unknown function | 1 | 51133 | 51462 |
| NP_569805.1 | NC_003387_p69 | hypothetical protein | phrog_3055 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 44414 | 45055 |
| NP_569778.1 | NC_003387_p42 | hypothetical protein | phrog_1840 | excisionase | integration and excision | 1 | 31897 | 32154 |
| NP_569761.1 | NC_003387_p25 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 21422 | 22426 |
| NP_569791.1 | NC_003387_p55 | hypothetical protein | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 36361 | 36894 |
| NP_569815.1 | NC_003387_p79 | hypothetical protein | phrog_2342 | unknown function | unknown function | 1 | 48704 | 49483 |
| NP_569783.1 | NC_003387_p47 | hypothetical protein | phrog_2286 | unknown function | unknown function | 1 | 33177 | 33917 |
| NP_569738.1 | NC_003387_p2 | hypothetical protein | phrog_2622 | unknown function | unknown function | 1 | 236 | 448 |
| NP_569744.1 | NC_003387_p8 | hypothetical protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 5384 | 5944 |
| NP_569795.1 | NC_003387_p59 | hypothetical protein | phrog_14762 | unknown function | unknown function | 1 | 39057 | 39377 |
| NP_569813.1 | NC_003387_p77 | hypothetical protein | phrog_1006 | unknown function | unknown function | 1 | 47753 | 48331 |
| NP_569779.1 | NC_003387_p43 | hypothetical protein | phrog_15371 | unknown function | unknown function | 1 | 32159 | 32380 |
| NP_569817.1 | NC_003387_p81 | hypothetical protein | phrog_666 | unknown function | unknown function | 1 | 49737 | 49934 |
| NP_569784.1 | NC_003387_p48 | hypothetical protein | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 33917 | 34147 |
| NP_569745.1 | NC_003387_p9 | major capsid subunit gp9 | phrog_10 | major head protein | head and packaging | 1 | 5999 | 6916 |
| NP_569822.1 | NC_003387_p86 | hypothetical protein | phrog_12460 | unknown function | unknown function | 1 | 51636 | 51872 |
| NP_569814.1 | NC_003387_p78 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48331 | 48663 |
| NP_569757.1 | NC_003387_p21 | minor tail subunit gp21 | phrog_1565 | minor tail protein | tail | 1 | 17408 | 18484 |
| NP_569816.1 | NC_003387_p80 | hypothetical protein | phrog_3868 | unknown function | unknown function | 1 | 49480 | 49743 |
| NP_569764.1 | NC_003387_p28 | hypothetical protein | phrog_700 | endolysin | lysis | 1 | 23341 | 24984 |
| NP_569803.1 | NC_003387_p67 | hypothetical protein | phrog_2478 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 41528 | 44131 |
| NP_569780.1 | NC_003387_p44 | hypothetical protein | phrog_2654 | unknown function | unknown function | 1 | 32456 | 32677 |
| NP_569789.1 | NC_003387_p53 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 35905 | 36183 |
| NP_569790.1 | NC_003387_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36275 | 36364 |
| NP_569752.1 | NC_003387_p16 | hypothetical protein | phrog_3656 | tail assembly chaperone | tail | 1 | 9793 | 10236 |
| NP_569794.1 | NC_003387_p58 | hypothetical protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 38736 | 38954 |
| NP_569740.1 | NC_003387_p4 | terminase gp4 | phrog_2 | terminase large subunit | head and packaging | 1 | 664 | 2088 |
| NP_569782.1 | NC_003387_p46 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 32969 | 33172 |
| NP_569767.1 | NC_003387_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26590 | 26679 |
| NP_569811.1 | NC_003387_p75 | hypothetical protein | phrog_14958 | unknown function | unknown function | 1 | 47196 | 47336 |
| NP_569797.1 | NC_003387_p61 | hypothetical protein | phrog_5466 | unknown function | unknown function | 1 | 39676 | 39882 |
| NP_569808.1 | NC_003387_p72 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 45538 | 46449 |
| NP_569742.1 | NC_003387_p6 | hypothetical protein | phrog_1752 | head maturation protease | head and packaging | 1 | 3587 | 5116 |
| NP_569766.1 | NC_003387_p30 | hypothetical protein | phrog_565 | holin | lysis | 1 | 26207 | 26593 |
| NP_569743.1 | NC_003387_p7 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 5113 | 5298 |
| NP_569747.1 | NC_003387_p11 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 7414 | 7764 |
| NP_569792.1 | NC_003387_p56 | hypothetical protein | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 37712 | 38569 |
| NP_569758.1 | NC_003387_p22 | hypothetical protein | phrog_1736 | minor tail protein | tail | 1 | 18489 | 18743 |
| NP_569812.1 | NC_003387_p76 | hypothetical protein | phrog_5546 | unknown function | unknown function | 1 | 47488 | 47700 |
| NP_569801.1 | NC_003387_p65 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 40975 | 41142 |
| NP_569806.1 | NC_003387_p70 | hypothetical protein | phrog_1370 | unknown function | unknown function | 1 | 45052 | 45219 |
| NP_569763.1 | NC_003387_p27 | hypothetical protein | phrog_31905 | unknown function | unknown function | 1 | 23219 | 23344 |
| NP_569768.1 | NC_003387_p32 | hypothetical protein | phrog_1298 | minor tail protein | tail | 1 | 26676 | 27095 |
| NP_569818.1 | NC_003387_p82 | hypothetical protein | phrog_22109 | unknown function | unknown function | 1 | 50097 | 50567 |
| NP_569804.1 | NC_003387_p68 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44124 | 44417 |
| NP_569775.1 | NC_003387_p39 | hypothetical protein | phrog_2433 | unknown function | unknown function | 1 | 29985 | 30689 |
| NP_569749.1 | NC_003387_p13 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 8014 | 8433 |
| NP_569770.1 | NC_003387_p34 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 27573 | 27821 |
| NP_569750.1 | NC_003387_p14 | major tail subunit gp14 | phrog_117 | major tail protein | tail | 1 | 8590 | 9204 |
| NP_569809.1 | NC_003387_p73 | hypothetical protein | phrog_6045 | unknown function | unknown function | 1 | 46518 | 46907 |
| NP_569759.1 | NC_003387_p23 | hypothetical protein | phrog_746 | minor tail protein | tail | 1 | 18727 | 21081 |
| NP_569800.1 | NC_003387_p64 | glutaredoxin gp67 | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 40730 | 40975 |
| NP_569741.1 | NC_003387_p5 | portal gp5 | phrog_104 | portal protein | head and packaging | 1 | 2101 | 3606 |
| NP_569785.1 | NC_003387_p49 | hypothetical protein | phrog_15484 | hydrolase | other | 1 | 34144 | 34833 |
| NP_569772.1 | NC_003387_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29037 | 29186 |
| NP_569821.1 | NC_003387_p85 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 51459 | 51626 |
| NP_569769.1 | NC_003387_p33 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 27085 | 27576 |
| NP_569753.1 | NC_003387_p17 | tape-measure protein | phrog_971 | endolysin | lysis | 1 | 10184 | 13873 |
| NP_569798.1 | NC_003387_p62 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 39937 | 40056 |
| NP_569751.1 | NC_003387_p15 | hypothetical protein | phrog_1861 | unknown function | unknown function | 1 | 9314 | 9763 |
| NP_569825.1 | NC_003387_p89 | hypothetical protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 52359 | 52637 |
| NP_569777.1 | NC_003387_p41 | hypothetical protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 31544 | 31900 |
| NP_569781.1 | NC_003387_p45 | hypothetical protein | phrog_3903 | unknown function | unknown function | 1 | 32674 | 32955 |
| NP_569819.1 | NC_003387_p83 | hypothetical protein | phrog_28795 | unknown function | unknown function | 1 | 50687 | 51007 |
| NP_569773.1 | NC_003387_p37 | hypothetical protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29183 | 29587 |
| NP_569746.1 | NC_003387_p10 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 7028 | 7414 |
| NP_569802.1 | NC_003387_p66 | hypothetical protein | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41139 | 41513 |
| NP_569793.1 | NC_003387_p57 | hypothetical protein | phrog_15653 | unknown function | unknown function | 1 | 38566 | 38739 |
| NP_569739.1 | NC_003387_p3 | hypothetical protein | phrog_1459 | terminase small subunit | head and packaging | 1 | 438 | 689 |