Genomic map of Mycobacterium phage TM4 (NC_003387)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_003387
Definition
Mycobacterium phage TM4, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus.
DB of origin
REFSEQ
Length
52797
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
89
%GC
68.11
Number of singletons
7
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_569807.1 NC_003387_p71 hypothetical protein phrog_15365 unknown function unknown function 1 45216 45545
NP_569765.1 NC_003387_p29 hypothetical protein phrog_102 endolysin lysis 1 24984 26186
NP_569771.1 NC_003387_p35 hypothetical protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 27808 28992
NP_569810.1 NC_003387_p74 hypothetical protein phrog_1338 unknown function unknown function 1 46904 47173
NP_569748.1 NC_003387_p12 hypothetical protein phrog_387 neck protein connector 1 7766 8017
NP_569799.1 NC_003387_p63 hypothetical protein phrog_1911 unknown function unknown function 1 40098 40643
NP_569754.1 NC_003387_p18 hypothetical protein phrog_106 minor tail protein tail 1 13970 15097
NP_569823.1 NC_003387_p87 hypothetical protein phrog_747 unknown function unknown function 1 51883 52179
NP_569762.1 NC_003387_p26 hypothetical protein phrog_240 head protein head and packaging 1 22832 23212
NP_569824.1 NC_003387_p88 hypothetical protein phrog_15574 unknown function unknown function 1 52192 52362
NP_569776.1 NC_003387_p40 hypothetical protein singleton unknown function unknown function 1 30913 31248
NP_569796.1 NC_003387_p60 hypothetical protein phrog_13625 unknown function unknown function 1 39374 39679
NP_569786.1 NC_003387_p50 hypothetical protein singleton unknown function unknown function 1 34748 34903
NP_569737.1 NC_003387_p1 hypothetical protein phrog_5391 unknown function unknown function 1 100 234
NP_569755.1 NC_003387_p19 hypothetical protein phrog_110 minor tail protein tail 1 15094 16851
NP_569787.1 NC_003387_p51 hypothetical protein phrog_801 dATP / dGTP pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 34900 35526
NP_569756.1 NC_003387_p20 hypothetical protein phrog_1697 minor tail protein tail 1 16851 17315
NP_569788.1 NC_003387_p52 hypothetical protein phrog_3186 unknown function unknown function 1 35523 35912
NP_569774.1 NC_003387_p38 hypothetical protein phrog_4112 unknown function unknown function 1 29584 29844
NP_569760.1 NC_003387_p24 hypothetical protein phrog_3901 unknown function unknown function 1 21138 21422
NP_569820.1 NC_003387_p84 hypothetical protein phrog_15374 unknown function unknown function 1 51133 51462
NP_569805.1 NC_003387_p69 hypothetical protein phrog_3055 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 44414 45055
NP_569778.1 NC_003387_p42 hypothetical protein phrog_1840 excisionase integration and excision 1 31897 32154
NP_569761.1 NC_003387_p25 hypothetical protein phrog_416 minor tail protein tail 1 21422 22426
NP_569791.1 NC_003387_p55 hypothetical protein phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 36361 36894
NP_569815.1 NC_003387_p79 hypothetical protein phrog_2342 unknown function unknown function 1 48704 49483
NP_569783.1 NC_003387_p47 hypothetical protein phrog_2286 unknown function unknown function 1 33177 33917
NP_569738.1 NC_003387_p2 hypothetical protein phrog_2622 unknown function unknown function 1 236 448
NP_569744.1 NC_003387_p8 hypothetical protein phrog_1793 head scaffolding protein head and packaging 1 5384 5944
NP_569795.1 NC_003387_p59 hypothetical protein phrog_14762 unknown function unknown function 1 39057 39377
NP_569813.1 NC_003387_p77 hypothetical protein phrog_1006 unknown function unknown function 1 47753 48331
NP_569779.1 NC_003387_p43 hypothetical protein phrog_15371 unknown function unknown function 1 32159 32380
NP_569817.1 NC_003387_p81 hypothetical protein phrog_666 unknown function unknown function 1 49737 49934
NP_569784.1 NC_003387_p48 hypothetical protein phrog_472 WhiB transcriptional factor transcription regulation 1 33917 34147
NP_569745.1 NC_003387_p9 major capsid subunit gp9 phrog_10 major head protein head and packaging 1 5999 6916
NP_569822.1 NC_003387_p86 hypothetical protein phrog_12460 unknown function unknown function 1 51636 51872
NP_569814.1 NC_003387_p78 hypothetical protein singleton unknown function unknown function 1 48331 48663
NP_569757.1 NC_003387_p21 minor tail subunit gp21 phrog_1565 minor tail protein tail 1 17408 18484
NP_569816.1 NC_003387_p80 hypothetical protein phrog_3868 unknown function unknown function 1 49480 49743
NP_569764.1 NC_003387_p28 hypothetical protein phrog_700 endolysin lysis 1 23341 24984
NP_569803.1 NC_003387_p67 hypothetical protein phrog_2478 DNA polymerase/primase DNA, RNA and nucleotide metabolism 1 41528 44131
NP_569780.1 NC_003387_p44 hypothetical protein phrog_2654 unknown function unknown function 1 32456 32677
NP_569789.1 NC_003387_p53 hypothetical protein phrog_1956 unknown function unknown function 1 35905 36183
NP_569790.1 NC_003387_p54 hypothetical protein singleton unknown function unknown function 1 36275 36364
NP_569752.1 NC_003387_p16 hypothetical protein phrog_3656 tail assembly chaperone tail 1 9793 10236
NP_569794.1 NC_003387_p58 hypothetical protein phrog_353 toxin moron, auxiliary metabolic gene and host takeover 1 38736 38954
NP_569740.1 NC_003387_p4 terminase gp4 phrog_2 terminase large subunit head and packaging 1 664 2088
NP_569782.1 NC_003387_p46 hypothetical protein phrog_1622 unknown function unknown function 1 32969 33172
NP_569767.1 NC_003387_p31 hypothetical protein singleton unknown function unknown function 1 26590 26679
NP_569811.1 NC_003387_p75 hypothetical protein phrog_14958 unknown function unknown function 1 47196 47336
NP_569797.1 NC_003387_p61 hypothetical protein phrog_5466 unknown function unknown function 1 39676 39882
NP_569808.1 NC_003387_p72 hypothetical protein phrog_908 unknown function unknown function 1 45538 46449
NP_569742.1 NC_003387_p6 hypothetical protein phrog_1752 head maturation protease head and packaging 1 3587 5116
NP_569766.1 NC_003387_p30 hypothetical protein phrog_565 holin lysis 1 26207 26593
NP_569743.1 NC_003387_p7 hypothetical protein phrog_1757 unknown function unknown function 1 5113 5298
NP_569747.1 NC_003387_p11 hypothetical protein phrog_763 head-tail adaptor connector 1 7414 7764
NP_569792.1 NC_003387_p56 hypothetical protein phrog_1674 exonuclease DNA, RNA and nucleotide metabolism 1 37712 38569
NP_569758.1 NC_003387_p22 hypothetical protein phrog_1736 minor tail protein tail 1 18489 18743
NP_569812.1 NC_003387_p76 hypothetical protein phrog_5546 unknown function unknown function 1 47488 47700
NP_569801.1 NC_003387_p65 hypothetical protein phrog_1091 unknown function unknown function 1 40975 41142
NP_569806.1 NC_003387_p70 hypothetical protein phrog_1370 unknown function unknown function 1 45052 45219
NP_569763.1 NC_003387_p27 hypothetical protein phrog_31905 unknown function unknown function 1 23219 23344
NP_569768.1 NC_003387_p32 hypothetical protein phrog_1298 minor tail protein tail 1 26676 27095
NP_569818.1 NC_003387_p82 hypothetical protein phrog_22109 unknown function unknown function 1 50097 50567
NP_569804.1 NC_003387_p68 hypothetical protein singleton unknown function unknown function 1 44124 44417
NP_569775.1 NC_003387_p39 hypothetical protein phrog_2433 unknown function unknown function 1 29985 30689
NP_569749.1 NC_003387_p13 hypothetical protein phrog_123 tail terminator connector 1 8014 8433
NP_569770.1 NC_003387_p34 hypothetical protein phrog_1738 unknown function unknown function 1 27573 27821
NP_569750.1 NC_003387_p14 major tail subunit gp14 phrog_117 major tail protein tail 1 8590 9204
NP_569809.1 NC_003387_p73 hypothetical protein phrog_6045 unknown function unknown function 1 46518 46907
NP_569759.1 NC_003387_p23 hypothetical protein phrog_746 minor tail protein tail 1 18727 21081
NP_569800.1 NC_003387_p64 glutaredoxin gp67 phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 40730 40975
NP_569741.1 NC_003387_p5 portal gp5 phrog_104 portal protein head and packaging 1 2101 3606
NP_569785.1 NC_003387_p49 hypothetical protein phrog_15484 hydrolase other 1 34144 34833
NP_569772.1 NC_003387_p36 hypothetical protein singleton unknown function unknown function 1 29037 29186
NP_569821.1 NC_003387_p85 hypothetical protein phrog_2057 unknown function unknown function 1 51459 51626
NP_569769.1 NC_003387_p33 hypothetical protein phrog_726 unknown function unknown function 1 27085 27576
NP_569753.1 NC_003387_p17 tape-measure protein phrog_971 endolysin lysis 1 10184 13873
NP_569798.1 NC_003387_p62 hypothetical protein phrog_2388 unknown function unknown function 1 39937 40056
NP_569751.1 NC_003387_p15 hypothetical protein phrog_1861 unknown function unknown function 1 9314 9763
NP_569825.1 NC_003387_p89 hypothetical protein phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 52359 52637
NP_569777.1 NC_003387_p41 hypothetical protein phrog_1702 transcriptional repressor transcription regulation 1 31544 31900
NP_569781.1 NC_003387_p45 hypothetical protein phrog_3903 unknown function unknown function 1 32674 32955
NP_569819.1 NC_003387_p83 hypothetical protein phrog_28795 unknown function unknown function 1 50687 51007
NP_569773.1 NC_003387_p37 hypothetical protein phrog_2311 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 29183 29587
NP_569746.1 NC_003387_p10 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 7028 7414
NP_569802.1 NC_003387_p66 hypothetical protein phrog_1571 HNH endonuclease DNA, RNA and nucleotide metabolism 1 41139 41513
NP_569793.1 NC_003387_p57 hypothetical protein phrog_15653 unknown function unknown function 1 38566 38739
NP_569739.1 NC_003387_p3 hypothetical protein phrog_1459 terminase small subunit head and packaging 1 438 689