Genomic map of Enterobacteria phage SfV (NC_003444)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_003444
Definition
Enterobacteria phage SfV, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
DB of origin
REFSEQ
Length
37074
Host Name
Shigella flexneri
Host domain
Bacteria
Is prophage?
undef
Number of proteins
53
%GC
50.76
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_599033.1 NC_003444_p1 small terminase subunit phrog_83 terminase small subunit head and packaging 1 68 562
NP_599085.1 NC_003444_p53 hypothetical protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 36666 37016
NP_599048.1 NC_003444_p16 tail protein phrog_177 baseplate hub tail 1 12995 14074
NP_599046.1 NC_003444_p14 tail protein phrog_28 tail length tape measure protein tail 1 9774 11609
NP_599071.1 NC_003444_p39 replication protein phrog_270 replication initiation protein DNA, RNA and nucleotide metabolism 1 28305 29123
NP_599064.1 NC_003444_p32 hypothetical protein phrog_204 unknown function unknown function -1 24254 24616
NP_599075.1 NC_003444_p43 crossover junction endodeoxyribonuclease phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 30587 30976
NP_599062.1 NC_003444_p30 hypothetical protein phrog_318 deoxyribonucleoside 5' monophosphate phosphatase other -1 22700 23236
NP_599047.1 NC_003444_p15 tail/DNA circulation protein phrog_184 baseplate hub tail 1 11655 12998
NP_599073.1 NC_003444_p41 DNA adenine methylase phrog_111 DNA methyltransferase other 1 29614 30267
NP_599078.1 NC_003444_p46 antitermination protein Q phrog_127 anti-termination protein Q-like transcription regulation 1 32816 33568
NP_599082.1 NC_003444_p50 lysin phrog_90 endolysin lysis 1 35630 36106
NP_599084.1 NC_003444_p52 Rz1 lytic protein phrog_456 Rz-like spanin lysis 1 36301 36639
NP_599072.1 NC_003444_p40 hypothetical protein phrog_1324 transcriptional activator transcription regulation 1 29126 29614
NP_599036.1 NC_003444_p4 capsid protease phrog_80 head maturation protease head and packaging 1 3659 4261
NP_599056.1 NC_003444_p24 bactoprenol glucosyltransferase phrog_841 GtrB-like O-antigen conversion moron, auxiliary metabolic gene and host takeover -1 19108 20031
NP_599065.1 NC_003444_p33 hypothetical protein phrog_3195 unknown function unknown function -1 25217 25513
NP_599043.1 NC_003444_p11 tail sheath protein phrog_165 tail sheath tail 1 7511 9007
NP_599069.1 NC_003444_p37 immunity region phrog_3960 transcriptional regulator transcription regulation 1 27243 28079
NP_599060.1 NC_003444_p28 hypothetical protein phrog_660 unknown function unknown function -1 22042 22347
NP_599044.1 NC_003444_p12 hypothetical protein phrog_185 tail tube protein tail 1 9007 9363
NP_599038.1 NC_003444_p6 hypothetical protein phrog_40 head-tail adaptor Ad1 connector 1 5580 5903
NP_599061.1 NC_003444_p29 hypothetical protein phrog_583 unknown function unknown function -1 22347 22709
NP_599070.1 NC_003444_p38 hypothetical protein phrog_1153 unknown function unknown function 1 28072 28308
NP_599063.1 NC_003444_p31 hypothetical protein phrog_210 unknown function unknown function -1 23364 24188
NP_599051.1 NC_003444_p19 tail protein phrog_6 baseplate wedge subunit tail 1 15034 16092
NP_599079.1 NC_003444_p47 hypothetical protein phrog_331 unknown function unknown function 1 33818 34012
NP_599067.1 NC_003444_p35 repressor phrog_35 transcriptional repressor transcription regulation 1 26451 26651
NP_599040.1 NC_003444_p8 hypothetical protein phrog_879 tail completion or Neck1 protein connector 1 6285 6791
NP_599066.1 NC_003444_p34 repressor phrog_4 transcriptional repressor transcription regulation -1 25686 26360
NP_599077.1 NC_003444_p45 hypothetical protein phrog_96 HNH endonuclease DNA, RNA and nucleotide metabolism 1 31885 32802
NP_599041.1 NC_003444_p9 hypothetical protein phrog_209 portal protein head and packaging 1 6788 7348
NP_599068.1 NC_003444_p36 hypothetical protein phrog_101 CII-like transcriptional activator transcription regulation 1 26695 27246
NP_599034.1 NC_003444_p2 large terminase subunit phrog_9 terminase large subunit head and packaging 1 559 2292
NP_599035.1 NC_003444_p3 portal protein phrog_12 portal protein head and packaging 1 2392 3666
NP_599052.1 NC_003444_p20 tail protein phrog_203 baseplate wedge subunit tail 1 16083 16667
NP_599042.1 NC_003444_p10 hypothetical protein phrog_208 unknown function unknown function 1 7357 7527
NP_599045.1 NC_003444_p13 hypothetical protein phrog_166 tail protein tail 1 9363 9632
NP_599059.1 NC_003444_p27 excisionase phrog_2907 excisionase integration and excision -1 21692 22135
NP_599074.1 NC_003444_p42 hypothetical protein phrog_362 transcriptional repressor transcription regulation 1 30264 30590
NP_599083.1 NC_003444_p51 Rz lytic protein phrog_214 Rz-like spanin lysis 1 36090 36482
NP_599058.1 NC_003444_p26 integrase phrog_1 integrase integration and excision -1 20652 21815
NP_599054.1 NC_003444_p22 tail fibre assembly protein phrog_188 tail fiber assembly protein tail 1 17230 17733
NP_599076.1 NC_003444_p44 hypothetical protein phrog_129 transcriptional regulator transcription regulation 1 30996 31805
NP_599037.1 NC_003444_p5 capsid phrog_10 major head protein head and packaging 1 4272 5501
NP_599057.1 NC_003444_p25 flippase phrog_2224 GtrA-like O-antigen conversion moron, auxiliary metabolic gene and host takeover -1 20028 20390
NP_599053.1 NC_003444_p21 hypothetical protein phrog_1396 tail fiber protein tail 1 16671 17321
NP_599049.1 NC_003444_p17 tail protein phrog_11 baseplate spike tail 1 14074 14622
NP_599055.1 NC_003444_p23 serotype-specific glucosyl transferase phrog_19534 glucosyltransferase moron, auxiliary metabolic gene and host takeover -1 17858 19111
NP_599080.1 NC_003444_p48 hypothetical protein phrog_67 DNA methyltransferase other 1 34162 35214
NP_599081.1 NC_003444_p49 holin phrog_126 holin/anti-holin lysis 1 35291 35626
NP_599050.1 NC_003444_p18 tail protein phrog_180 baseplate wedge subunit tail 1 14622 15047
NP_599039.1 NC_003444_p7 hypothetical protein phrog_25 head closure Hc1 connector 1 6014 6310