| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_004066 |
Definition |
Lactococcus phage ul36, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
36798 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
61 |
%GC |
35.83 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_663666.1 | NC_004066_p33 | hypothetical protein | phrog_13719 | unknown function | unknown function | 1 | 15329 | 15508 |
| NP_663675.1 | NC_004066_p42 | hypothetical protein | phrog_918 | unknown function | unknown function | 1 | 21544 | 21813 |
| NP_663638.1 | NC_004066_p4 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 3246 | 3833 |
| NP_663678.1 | NC_004066_p45 | hypothetical protein | phrog_132 | head-tail adaptor | connector | 1 | 23686 | 24018 |
| NP_663640.1 | NC_004066_p6 | cro-like repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 4643 | 4867 |
| NP_663669.1 | NC_004066_p36 | hypothetical protein | phrog_2198 | Alt-like transcription activator | transcription regulation | 1 | 16358 | 16780 |
| NP_663654.1 | NC_004066_p21 | hypothetical protein | phrog_7446 | unknown function | unknown function | 1 | 11295 | 11465 |
| NP_663650.1 | NC_004066_p17 | hypothetical protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 9616 | 10341 |
| NP_663684.1 | NC_004066_p52 | tape-measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 26378 | 28591 |
| NP_663691.1 | NC_004066_p59 | holin | phrog_881 | holin | lysis | 1 | 34854 | 35078 |
| YP_001210364.1 | NC_004066_p61 | hypothetical protein | phrog_26180 | unknown function | unknown function | -1 | 36405 | 36608 |
| NP_663648.1 | NC_004066_p15 | single stranded binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 8284 | 8709 |
| NP_663647.1 | NC_004066_p14 | translation initiation factor | phrog_1097 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 7533 | 8291 |
| YP_001210363.1 | NC_004066_p47 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 24323 | 24649 |
| NP_663652.1 | NC_004066_p19 | hypothetical protein | phrog_3109 | unknown function | unknown function | 1 | 10730 | 10969 |
| NP_663692.1 | NC_004066_p60 | lysin | phrog_291 | endolysin | lysis | 1 | 35075 | 36364 |
| NP_663677.1 | NC_004066_p44 | major capsid protein | phrog_840 | major head protein | head and packaging | 1 | 22552 | 23415 |
| NP_663663.1 | NC_004066_p30 | hypothetical protein | phrog_7406 | unknown function | unknown function | 1 | 14518 | 14736 |
| NP_663653.1 | NC_004066_p20 | hypothetical protein | phrog_5080 | unknown function | unknown function | 1 | 11080 | 11286 |
| NP_663645.1 | NC_004066_p12 | transcription regulator | phrog_4416 | transcriptional regulator | transcription regulation | 1 | 6845 | 7030 |
| NP_663680.1 | NC_004066_p48 | structural protein | phrog_176 | tail terminator | connector | 1 | 24646 | 25035 |
| NP_663671.1 | NC_004066_p38 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 17461 | 18849 |
| NP_663643.1 | NC_004066_p9 | hypothetical protein | phrog_7263 | unknown function | unknown function | 1 | 6021 | 6254 |
| NP_663674.1 | NC_004066_p41 | hypothetical protein | phrog_20139 | unknown function | unknown function | 1 | 21306 | 21515 |
| NP_663683.1 | NC_004066_p51 | hypothetical protein | phrog_441 | tail assembly chaperone | tail | 1 | 26093 | 26362 |
| NP_663657.1 | NC_004066_p24 | hypothetical protein | phrog_121 | unknown function | unknown function | 1 | 11765 | 12478 |
| NP_663660.1 | NC_004066_p27 | hypothetical protein | phrog_1494 | unknown function | unknown function | 1 | 13240 | 13437 |
| NP_663651.1 | NC_004066_p18 | RusA-like resolvase | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 10338 | 10727 |
| NP_663673.1 | NC_004066_p40 | hypothetical protein | phrog_115 | minor head protein | head and packaging | 1 | 20215 | 21255 |
| NP_663685.1 | NC_004066_p53 | structural protein | phrog_33 | distal tail protein Dit | tail | 1 | 28601 | 29362 |
| NP_663667.1 | NC_004066_p34 | hypothetical protein | phrog_22390 | unknown function | unknown function | 1 | 15646 | 16110 |
| NP_663636.1 | NC_004066_p2 | hypothetical protein | phrog_7115 | unknown function | unknown function | -1 | 1701 | 2075 |
| NP_663662.1 | NC_004066_p29 | hypothetical protein | phrog_1071 | DNA methyltransferase | other | 1 | 13779 | 14471 |
| NP_663661.1 | NC_004066_p28 | hypothetical protein | phrog_3808 | unknown function | unknown function | 1 | 13430 | 13792 |
| NP_663690.1 | NC_004066_p58 | hypothetical protein | phrog_6453 | unknown function | unknown function | 1 | 34562 | 34864 |
| NP_663664.1 | NC_004066_p31 | hypothetical protein | phrog_2670 | unknown function | unknown function | 1 | 14733 | 14969 |
| NP_663665.1 | NC_004066_p32 | hypothetical protein | phrog_8817 | unknown function | unknown function | 1 | 15150 | 15332 |
| NP_663642.1 | NC_004066_p8 | hypothetical protein | phrog_823 | unknown function | unknown function | 1 | 5623 | 5958 |
| NP_663682.1 | NC_004066_p50 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 25659 | 26009 |
| NP_663672.1 | NC_004066_p39 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 18850 | 20211 |
| NP_663687.1 | NC_004066_p55 | structural protein | phrog_8913 | minor head protein | head and packaging | 1 | 32128 | 33096 |
| NP_663656.1 | NC_004066_p23 | hypothetical protein | phrog_5602 | unknown function | unknown function | 1 | 11677 | 11829 |
| NP_663658.1 | NC_004066_p25 | dUTPase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 12475 | 12894 |
| NP_663686.1 | NC_004066_p54 | structural protein | phrog_1067 | minor head protein | head and packaging | 1 | 29389 | 32115 |
| NP_663688.1 | NC_004066_p56 | structural protein | phrog_5983 | tail protein | tail | 1 | 33047 | 33958 |
| NP_663668.1 | NC_004066_p35 | hypothetical protein | phrog_26874 | unknown function | unknown function | 1 | 16107 | 16280 |
| NP_663681.1 | NC_004066_p49 | major tail protein | phrog_238 | major tail protein | tail | 1 | 25046 | 25543 |
| NP_663676.1 | NC_004066_p43 | scaffolding protein | phrog_2932 | head scaffolding protein | head and packaging | 1 | 21938 | 22534 |
| NP_663679.1 | NC_004066_p46 | hypothetical protein | phrog_348 | minor head protein | head and packaging | 1 | 24015 | 24326 |
| NP_663659.1 | NC_004066_p26 | hypothetical protein | phrog_6209 | unknown function | unknown function | 1 | 12897 | 13253 |
| NP_663637.1 | NC_004066_p3 | hypothetical protein | phrog_17949 | unknown function | unknown function | -1 | 2118 | 3185 |
| NP_663646.1 | NC_004066_p13 | hypothetical protein | phrog_4729 | unknown function | unknown function | 1 | 7129 | 7524 |
| NP_663655.1 | NC_004066_p22 | hypothetical protein | phrog_7240 | unknown function | unknown function | 1 | 11478 | 11684 |
| NP_663641.1 | NC_004066_p7 | anti-repressor | phrog_373 | anti-repressor | transcription regulation | 1 | 4894 | 5610 |
| NP_663639.2 | NC_004066_p5 | cI-like repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 3843 | 4370 |
| NP_663635.1 | NC_004066_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 502 | 1581 |
| NP_663644.1 | NC_004066_p11 | hypothetical protein | phrog_5450 | unknown function | unknown function | 1 | 6590 | 6826 |
| NP_663670.1 | NC_004066_p37 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 17058 | 17468 |
| YP_001210362.1 | NC_004066_p10 | hypothetical protein | phrog_6258 | unknown function | unknown function | -1 | 6209 | 6487 |
| NP_663649.2 | NC_004066_p16 | replisome organizer | phrog_5708 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 8834 | 9616 |
| NP_663689.1 | NC_004066_p57 | structural protein | phrog_35784 | baseplate protein | tail | 1 | 33977 | 34474 |