Genomic map of Natrialba phage PhiCh1 (NC_004084)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_004084
Definition
Natrialba phage PhiCh1, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Myohalovirus; unclassified Myohalovirus.
DB of origin
REFSEQ
Length
58498
Host Name
Natrialba magadii
Host domain
Archaea
Is prophage?
undef
Number of proteins
98
%GC
61.88
Number of singletons
15
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_665974.1 NC_004084_p57 hypothetical protein phrog_4278 unknown function unknown function 1 38175 38696
NP_665968.1 NC_004084_p51 hypothetical protein singleton unknown function unknown function -1 34609 35043
NP_665961.1 NC_004084_p44 hypothetical protein phrog_20037 unknown function unknown function 1 30410 30574
NP_665941.1 NC_004084_p24 hypothetical protein singleton unknown function unknown function 1 16791 17498
NP_666010.1 NC_004084_p93 one transmembrane helix protein phrog_24914 unknown function unknown function 1 55193 55447
NP_665946.1 NC_004084_p29 hypothetical protein phrog_11 baseplate spike tail 1 19244 19804
NP_665951.1 NC_004084_p34 hypothetical protein phrog_18555 unknown function unknown function 1 22645 23253
NP_665938.1 NC_004084_p21 hypothetical protein phrog_27001 unknown function unknown function 1 13213 13593
NP_665927.1 NC_004084_p10 capsid protein gpB singleton virion structural protein head and packaging 1 6588 7712
NP_665918.1 NC_004084_p1 HNH endonuclease phrog_8048 HNH endonuclease DNA, RNA and nucleotide metabolism 1 1 63
NP_665918.1 NC_004084_p1 HNH endonuclease phrog_8048 HNH endonuclease DNA, RNA and nucleotide metabolism 1 58253 58498
NP_665975.1 NC_004084_p58 HNH endonuclease phrog_24252 HNH endonuclease DNA, RNA and nucleotide metabolism 1 38809 39249
NP_665978.1 NC_004084_p61 hypothetical protein singleton unknown function unknown function 1 40744 41007
NP_665972.1 NC_004084_p55 plasmid replication protein RepH phrog_17376 replication protein DNA, RNA and nucleotide metabolism 1 35848 37593
NP_665942.1 NC_004084_p25 hypothetical protein phrog_26818 unknown function unknown function 1 17495 18049
NP_665977.1 NC_004084_p60 PCNA phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism 1 39991 40734
NP_665981.1 NC_004084_p64 hypothetical protein phrog_23952 unknown function unknown function 1 41602 41904
NP_665982.1 NC_004084_p65 hypothetical protein phrog_23359 unknown function unknown function 1 41894 42094
NP_665921.1 NC_004084_p4 hypothetical protein phrog_20473 unknown function unknown function 1 2548 2796
NP_666014.1 NC_004084_p97 hypothetical protein phrog_18289 unknown function unknown function 1 57643 57981
NP_665958.1 NC_004084_p41 glutaminase phrog_26360 unknown function unknown function -1 28574 29149
NP_665980.1 NC_004084_p63 hypothetical protein phrog_25790 unknown function unknown function 1 41367 41609
NP_666007.1 NC_004084_p90 hypothetical protein phrog_18924 unknown function unknown function 1 53862 54446
NP_665945.1 NC_004084_p28 hypothetical protein phrog_196 baseplate hub tail 1 18639 19238
NP_665999.1 NC_004084_p82 hypothetical protein phrog_26172 unknown function unknown function 1 49297 49617
NP_665931.1 NC_004084_p14 hypothetical protein phrog_442 head-tail adaptor connector 1 9181 9777
NP_665984.1 NC_004084_p67 hypothetical protein phrog_25896 unknown function unknown function 1 42311 42475
NP_665957.1 NC_004084_p40 hypothetical protein phrog_24760 unknown function unknown function -1 28293 28577
NP_666002.1 NC_004084_p85 hypothetical protein phrog_22231 unknown function unknown function 1 51635 52399
NP_665986.1 NC_004084_p69 hypothetical protein phrog_26808 unknown function unknown function 1 42617 43258
NP_665983.1 NC_004084_p66 hypothetical protein phrog_27174 unknown function unknown function 1 42084 42311
NP_666008.1 NC_004084_p91 hypothetical protein phrog_14318 unknown function unknown function 1 54474 54848
NP_665922.1 NC_004084_p5 hypothetical protein phrog_23278 unknown function unknown function 1 2789 2974
NP_665971.1 NC_004084_p54 hypothetical protein phrog_30493 unknown function unknown function 1 34790 35494
NP_665979.1 NC_004084_p62 hypothetical protein phrog_20465 unknown function unknown function 1 41174 41389
NP_665943.1 NC_004084_p26 hypothetical protein phrog_19045 unknown function unknown function 1 18050 18394
NP_665959.1 NC_004084_p42 hypothetical protein phrog_23742 unknown function unknown function -1 29154 29936
NP_665998.1 NC_004084_p81 M.PhiCh1-II phrog_363 DNA methyltransferase other 1 48453 49304
NP_665923.1 NC_004084_p6 hypothetical protein phrog_24503 unknown function unknown function 1 2971 3249
NP_665939.1 NC_004084_p22 hypothetical protein phrog_8446 HNH endonuclease DNA, RNA and nucleotide metabolism 1 13854 14693
NP_665991.1 NC_004084_p74 hypothetical protein phrog_18968 unknown function unknown function 1 45063 45500
NP_665966.1 NC_004084_p49 Rep phrog_2440 transcriptional regulator transcription regulation -1 33665 33922
NP_665920.1 NC_004084_p3 hypothetical protein phrog_38 terminase large subunit head and packaging 1 710 2374
NP_665924.1 NC_004084_p7 capsid protein phrog_12 portal protein head and packaging 1 3389 4792
NP_665985.1 NC_004084_p68 hypothetical protein phrog_26833 unknown function unknown function 1 42472 42888
NP_665993.1 NC_004084_p76 hypothetical protein phrog_26552 unknown function unknown function 1 45983 46603
NP_665947.1 NC_004084_p30 hypothetical protein phrog_120 baseplate wedge subunit tail 1 19828 20184
NP_665962.1 NC_004084_p45 hypothetical protein phrog_17124 unknown function unknown function 1 30571 30966
NP_665987.1 NC_004084_p70 hypothetical protein phrog_2045 unknown function unknown function 1 43248 44120
NP_666001.1 NC_004084_p84 hypothetical protein phrog_19090 unknown function unknown function 1 51063 51638
NP_665933.1 NC_004084_p16 hypothetical protein phrog_22690 unknown function unknown function 1 10156 10437
NP_665973.1 NC_004084_p56 immunity protein phrog_20952 transcriptional regulator transcription regulation -1 37705 37932
NP_665929.1 NC_004084_p12 capsid protein gpE phrog_1623 virion structural protein head and packaging 1 7756 8721
NP_666012.1 NC_004084_p95 adenine methyltransferase phrog_498 DNA methyltransferase other 1 55840 57099
NP_665940.1 NC_004084_p23 hypothetical protein singleton unknown function unknown function 1 15277 16635
NP_665935.1 NC_004084_p18 hypothetical protein phrog_27147 unknown function unknown function 1 10891 11487
NP_665954.1 NC_004084_p37 hypothetical protein phrog_18723 unknown function unknown function -1 25916 27202
NP_665934.1 NC_004084_p17 hypothetical protein phrog_26 tail completion or Neck1 protein connector 1 10437 10874
NP_665955.1 NC_004084_p38 hypothetical protein phrog_6788 unknown function unknown function 1 27236 27961
NP_665976.1 NC_004084_p59 hypothetical protein phrog_17210 unknown function unknown function 1 39246 39875
NP_665948.1 NC_004084_p31 hypothetical protein phrog_6 baseplate wedge subunit tail 1 20191 21462
NP_665930.1 NC_004084_p13 hypothetical protein phrog_17946 unknown function unknown function 1 8731 9174
NP_666009.1 NC_004084_p92 hypothetical protein singleton unknown function unknown function 1 54867 55196
NP_665990.1 NC_004084_p73 hypothetical protein singleton unknown function unknown function 1 44545 45066
NP_665996.1 NC_004084_p79 hypothetical protein phrog_22595 unknown function unknown function 1 47082 47681
NP_665992.1 NC_004084_p75 hypothetical protein phrog_19940 unknown function unknown function 1 45493 45990
NP_665926.1 NC_004084_p9 capsid protein gpD singleton virion structural protein head and packaging 1 5825 6742
NP_666005.1 NC_004084_p88 hypothetical protein phrog_23907 unknown function unknown function 1 52823 53233
NP_665997.1 NC_004084_p80 hypothetical protein phrog_23711 unknown function unknown function 1 47669 48460
NP_665932.1 NC_004084_p15 hypothetical protein phrog_24908 unknown function unknown function 1 9774 10154
NP_665970.1 NC_004084_p53 hypothetical protein singleton unknown function unknown function -1 34724 34972
NP_665919.1 NC_004084_p2 hypothetical protein phrog_21336 unknown function unknown function 1 115 717
NP_665969.1 NC_004084_p52 hypothetical protein singleton unknown function unknown function -1 34641 34901
NP_666004.1 NC_004084_p87 hypothetical protein phrog_21385 unknown function unknown function 1 52600 52881
NP_665928.1 NC_004084_p11 hypothetical protein singleton unknown function unknown function 1 7441 7740
NP_666003.1 NC_004084_p86 hypothetical protein phrog_23611 unknown function unknown function 1 52392 52607
NP_666011.1 NC_004084_p94 holin phrog_27838 holin lysis 1 55431 55763
NP_665989.1 NC_004084_p72 hypothetical protein phrog_464 unknown function unknown function 1 44340 44774
NP_665994.1 NC_004084_p77 one transmembrane helix protein phrog_23284 unknown function unknown function 1 46593 46820
NP_665956.1 NC_004084_p39 hypothetical protein phrog_18890 transcriptional regulator transcription regulation -1 27971 28246
NP_665995.1 NC_004084_p78 hypothetical protein singleton unknown function unknown function 1 46841 47143
NP_665960.1 NC_004084_p43 hypothetical protein singleton unknown function unknown function -1 29876 30220
NP_666013.1 NC_004084_p96 hypothetical protein phrog_15023 unknown function unknown function 1 57092 57628
NP_665949.1 NC_004084_p32 hypothetical protein phrog_1160 baseplate protein tail 1 21437 22060
NP_665950.1 NC_004084_p33 hypothetical protein phrog_18500 unknown function unknown function 1 22064 22648
NP_665967.1 NC_004084_p50 hypothetical protein singleton unknown function unknown function 1 34480 34833
NP_666000.1 NC_004084_p83 M.PhiCh1-III phrog_67 DNA methyltransferase other 1 49720 51066
NP_665988.1 NC_004084_p71 hypothetical protein phrog_20179 unknown function unknown function 1 44110 44343
NP_665963.1 NC_004084_p46 site specific recombinase Int2 phrog_216 integrase integration and excision -1 30963 31562
NP_666015.1 NC_004084_p98 hypothetical protein phrog_19338 unknown function unknown function 1 58047 58256
NP_666006.1 NC_004084_p89 hypothetical protein phrog_22257 unknown function unknown function 1 53226 53579
NP_665937.1 NC_004084_p20 capsid protein gpA/H phrog_25283 head protein head and packaging 1 12821 13213
NP_665925.1 NC_004084_p8 capsid protein gpC phrog_3517 head morphogenesis head and packaging 1 4799 5746
NP_665944.1 NC_004084_p27 hypothetical protein singleton unknown function unknown function 1 18397 18741
NP_665952.1 NC_004084_p35 hypothetical protein phrog_18723 unknown function unknown function 1 23246 24616
NP_665953.1 NC_004084_p36 site specific recombinase Int1 phrog_216 integrase integration and excision -1 24919 25593
NP_665965.1 NC_004084_p48 hypothetical protein phrog_26668 unknown function unknown function 1 32686 33084
NP_665936.1 NC_004084_p19 capsid protein CP67 phrog_20601 head protein head and packaging 1 11524 12804
NP_665964.1 NC_004084_p47 plasmid partitioning protein Soj phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism 1 31923 32693