Genomic map of Lactobacillus phage A2 (NC_004112)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_004112
Definition
Lactobacillus phage A2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
43411
Host Name
Lactobacillus casei
Host domain
Bacteria
Is prophage?
undef
Number of proteins
61
%GC
44.88
Number of singletons
8
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_680543.1 NC_004112_p61 small terminase subunit phrog_2071 ATPase other 1 42879 43313
NP_680516.1 NC_004112_p34 single stranded binding protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 29362 29904
NP_680530.1 NC_004112_p48 endodeoxyribonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 36532 37083
NP_680523.1 NC_004112_p41 hypothetical protein phrog_121 unknown function unknown function 1 33874 34380
NP_680536.1 NC_004112_p54 hypothetical protein phrog_10399 unknown function unknown function 1 39555 39809
NP_680509.1 NC_004112_p27 hypothetical protein phrog_823 unknown function unknown function 1 26023 26313
NP_680495.1 NC_004112_p13 hypothetical protein phrog_202 distal tail protein Dit tail 1 13653 15431
NP_680485.1 NC_004112_p3 portal protein phrog_12 portal protein head and packaging 1 2500 3753
NP_680539.1 NC_004112_p57 endodeoxyribonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 40887 41510
NP_680541.1 NC_004112_p59 hypothetical protein phrog_10715 hydrolase other 1 41949 42530
NP_680537.1 NC_004112_p55 hypothetical protein phrog_323 transcriptional regulator, D5-like transcription regulation 1 39833 40186
NP_680521.1 NC_004112_p39 hypothetical protein phrog_6766 unknown function unknown function 1 33161 33349
NP_680496.1 NC_004112_p14 host interaction protein phrog_588 tail fiber protein and host specificity tail 1 15507 17978
NP_680538.1 NC_004112_p56 hypothetical protein singleton unknown function unknown function 1 40213 40824
NP_680498.1 NC_004112_p16 hypothetical protein phrog_4105 unknown function unknown function 1 18416 18766
NP_680490.1 NC_004112_p8 head-tail joining protein phrog_5 tail completion or Neck1 protein connector 1 6526 6912
NP_680527.1 NC_004112_p45 hypothetical protein phrog_18349 unknown function unknown function 1 35338 35625
NP_680520.1 NC_004112_p38 hypothetical protein singleton unknown function unknown function 1 32978 33157
NP_680519.1 NC_004112_p37 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 32877 33170
NP_680528.1 NC_004112_p46 hypothetical protein phrog_32293 unknown function unknown function 1 35746 36036
NP_680518.1 NC_004112_p36 hypothetical protein singleton unknown function unknown function 1 32494 32847
NP_680524.1 NC_004112_p42 hypothetical protein phrog_3327 unknown function unknown function 1 34370 34777
NP_680488.1 NC_004112_p6 DNA packaging protein phrog_40 head-tail adaptor Ad1 connector 1 5908 6207
NP_680504.1 NC_004112_p22 hypothetical protein phrog_5319 outer membrane protein other -1 23043 23720
NP_680500.1 NC_004112_p18 lysin phrog_3393 endolysin lysis 1 19213 20265
NP_680540.1 NC_004112_p58 hypothetical protein phrog_7615 unknown function unknown function 1 41514 41936
NP_680535.1 NC_004112_p53 hypothetical protein phrog_26294 unknown function unknown function 1 39294 39518
NP_680531.1 NC_004112_p49 hypothetical protein phrog_1494 unknown function unknown function 1 37080 37367
NP_680522.1 NC_004112_p40 hypothetical protein phrog_12824 endonuclease DNA, RNA and nucleotide metabolism 1 33405 33740
NP_680502.1 NC_004112_p20 integrase phrog_1 integrase integration and excision -1 21719 22876
NP_680503.1 NC_004112_p21 excisionase phrog_32683 unknown function unknown function -1 22952 23182
NP_680533.1 NC_004112_p51 hypothetical protein phrog_21820 unknown function unknown function 1 38251 38430
NP_680542.1 NC_004112_p60 hypothetical protein phrog_589 HNH endonuclease DNA, RNA and nucleotide metabolism 1 42511 42882
NP_680511.1 NC_004112_p29 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 26812 27303
NP_680497.1 NC_004112_p15 hypothetical protein phrog_4573 unknown function unknown function 1 17988 18311
NP_680517.1 NC_004112_p35 primase phrog_1829 DNA primase DNA, RNA and nucleotide metabolism 1 29923 32235
NP_680515.1 NC_004112_p33 helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 27998 29365
NP_680494.1 NC_004112_p12 tape measure protein phrog_1293 tail length tape measure protein tail 1 8787 13652
NP_680505.1 NC_004112_p23 CI like protein phrog_4 transcriptional repressor transcription regulation -1 23779 24453
NP_680512.1 NC_004112_p30 hypothetical protein singleton unknown function unknown function 1 26870 27079
NP_680526.1 NC_004112_p44 hypothetical protein phrog_21125 unknown function unknown function 1 35054 35341
NP_680507.1 NC_004112_p25 antirepressor phrog_2899 anti-repressor Ant transcription regulation 1 24857 25339
NP_680508.1 NC_004112_p26 hypothetical protein singleton unknown function unknown function -1 25745 25957
NP_680506.1 NC_004112_p24 Cro protein phrog_3 transcriptional repressor transcription regulation 1 24615 24860
NP_680486.1 NC_004112_p4 protease phrog_80 head maturation protease head and packaging 1 3707 4336
NP_680484.1 NC_004112_p2 large terminase subunit phrog_9 terminase large subunit head and packaging 1 600 2291
NP_680491.1 NC_004112_p9 head-tail joining protein phrog_78 tail terminator connector 1 6912 7256
NP_680483.1 NC_004112_p1 terminase subunit phrog_83 terminase small subunit head and packaging 1 102 557
NP_680534.1 NC_004112_p52 hypothetical protein singleton unknown function unknown function 1 38725 39198
NP_680510.1 NC_004112_p28 hypothetical protein phrog_5205 unknown function unknown function 1 26591 26794
NP_680529.1 NC_004112_p47 methyltransferase phrog_954 DNA methyltransferase other 1 36047 36535
NP_680532.1 NC_004112_p50 hypothetical protein phrog_248 transcriptional activator transcription regulation 1 37702 38163
NP_680487.1 NC_004112_p5 major head protein phrog_10 major head protein head and packaging 1 4378 5580
NP_680489.1 NC_004112_p7 head-tail joining protein phrog_25 head closure Hc1 connector 1 6086 6526
NP_680492.1 NC_004112_p10 major tail protein phrog_88 major tail protein tail 1 7331 7939
NP_680514.1 NC_004112_p32 hypothetical protein singleton unknown function unknown function -1 27684 27965
NP_680513.1 NC_004112_p31 NTP-binding protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 27313 28035
NP_680499.1 NC_004112_p17 holin phrog_10091 holin lysis 1 18780 19211
NP_680525.1 NC_004112_p43 hypothetical protein phrog_20480 unknown function unknown function 1 34774 35037
NP_680493.1 NC_004112_p11 hypothetical protein singleton unknown function unknown function 1 8253 8474
NP_680501.1 NC_004112_p19 hypothetical protein phrog_3243 unknown function unknown function 1 20388 21290