| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_004166 |
Definition |
Bacteriophage SPP1 complete nucleotide sequence. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
44010 |
Host Name |
Bacillus subtilis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
97 |
%GC |
43.71 |
Number of singletons |
58 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_690703.1 | NC_004166_p47 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 21357 | 21710 |
| NP_690751.1 | NC_004166_p95 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 42609 | 42764 |
| NP_690667.1 | NC_004166_p16 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 5295 | 5618 |
| YP_009268706.1 | NC_004166_p38 | protein of an unannotated phage | phrog_19445 | tail tip protein Tal | head and packaging | 1 | 16125 | 19460 |
| NP_690699.1 | NC_004166_p43 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 20086 | 20241 |
| YP_710298.1 | NC_004166_p29 | protein of an unannotated phage | phrog_7440 | major tail protein | tail | 1 | 10481 | 11276 |
| YP_710299.1 | NC_004166_p32 | protein of an unannotated phage | phrog_183 | tail chaperone protein | tail | 1 | 11342 | 12252 |
| NP_690702.1 | NC_004166_p46 | protein of an unannotated phage | phrog_2742 | endolysin | lysis | 1 | 20842 | 21657 |
| NP_690716.1 | NC_004166_p60 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 26208 | 26603 |
| NP_690665.1 | NC_004166_p14 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 4961 | 5284 |
| NP_690714.1 | NC_004166_p58 | protein of an unannotated phage | phrog_5156 | unknown function | unknown function | 1 | 25276 | 27786 |
| NP_690724.1 | NC_004166_p68 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 31611 | 31904 |
| NP_690708.1 | NC_004166_p52 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 23355 | 23672 |
| NP_690700.1 | NC_004166_p44 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 20234 | 20464 |
| NP_690670.1 | NC_004166_p19 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 6877 | 7314 |
| NP_690726.1 | NC_004166_p70 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 31895 | 32185 |
| NP_690706.1 | NC_004166_p50 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 22831 | 23118 |
| NP_690678.1 | NC_004166_p27 | protein of an unannotated phage | phrog_5 | tail completion or Neck1 protein | connector | 1 | 9632 | 10066 |
| NP_690712.1 | NC_004166_p56 | protein of an unannotated phage | phrog_5422 | unknown function | unknown function | 1 | 24569 | 24949 |
| NP_690710.1 | NC_004166_p54 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 23857 | 24027 |
| NP_690675.1 | NC_004166_p24 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 8825 | 9001 |
| NP_690725.1 | NC_004166_p69 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 31639 | 31893 |
| NP_690747.1 | NC_004166_p91 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 41642 | 42010 |
| NP_690736.1 | NC_004166_p80 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 37998 | 38324 |
| NP_690715.1 | NC_004166_p59 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 25285 | 25758 |
| NP_690752.1 | NC_004166_p96 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 43173 | 43415 |
| NP_690697.1 | NC_004166_p41 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 19733 | 20029 |
| NP_690653.1 | NC_004166_p2 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 43979 | 44010 |
| NP_690653.1 | NC_004166_p2 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 1 | 274 |
| NP_690727.1 | NC_004166_p71 | protein of an unannotated phage | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 32175 | 33038 |
| NP_690741.1 | NC_004166_p85 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 39429 | 39782 |
| NP_690681.1 | NC_004166_p31 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 10640 | 11194 |
| NP_690684.1 | NC_004166_p33 | protein of an unannotated phage | phrog_183 | tail chaperone protein | tail | 1 | 11342 | 11881 |
| NP_690668.1 | NC_004166_p17 | protein of an unannotated phage | phrog_17102 | unknown function | unknown function | 1 | 6214 | 6552 |
| NP_690669.1 | NC_004166_p18 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 6525 | 6734 |
| NP_690704.1 | NC_004166_p48 | protein of an unannotated phage | phrog_263 | holin | lysis | 1 | 21659 | 21907 |
| NP_690749.1 | NC_004166_p93 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 42241 | 42414 |
| YP_009268705.1 | NC_004166_p34 | protein of an unannotated phage | phrog_58 | tail length tape measure protein | tail | 1 | 12264 | 15362 |
| NP_690680.1 | NC_004166_p30 | protein of an unannotated phage | phrog_238 | major tail protein | tail | 1 | 10481 | 11014 |
| NP_690672.1 | NC_004166_p21 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 7363 | 7704 |
| NP_690745.1 | NC_004166_p89 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 40895 | 41206 |
| NP_690750.1 | NC_004166_p94 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 42430 | 42612 |
| NP_690740.1 | NC_004166_p84 | protein of an unannotated phage | phrog_23069 | unknown function | unknown function | 1 | 39129 | 39425 |
| NP_690738.1 | NC_004166_p82 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 38564 | 38959 |
| NP_690729.1 | NC_004166_p73 | protein of an unannotated phage | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 33031 | 33510 |
| NP_690719.1 | NC_004166_p63 | protein of an unannotated phage | phrog_2234 | tail spike protein | tail | 1 | 28194 | 29993 |
| NP_690664.1 | NC_004166_p13 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 4657 | 4947 |
| NP_690652.1 | NC_004166_p1 | protein of an unannotated phage | phrog_51 | terminase small subunit | head and packaging | 1 | 1 | 422 |
| NP_690652.1 | NC_004166_p1 | protein of an unannotated phage | phrog_51 | terminase small subunit | head and packaging | 1 | 43878 | 44010 |
| NP_690657.1 | NC_004166_p6 | protein of an unannotated phage | phrog_30181 | unknown function | unknown function | 1 | 1566 | 1781 |
| NP_690663.1 | NC_004166_p12 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 4339 | 4572 |
| NP_690722.1 | NC_004166_p66 | protein of an unannotated phage | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 30532 | 31467 |
| NP_690733.1 | NC_004166_p77 | protein of an unannotated phage | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 36722 | 38050 |
| NP_690723.1 | NC_004166_p67 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 31464 | 31637 |
| NP_690701.2 | NC_004166_p45 | protein of an unannotated phage | phrog_689 | holin | lysis | 1 | 20571 | 20822 |
| NP_690656.1 | NC_004166_p5 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 804 | 1088 |
| NP_690746.1 | NC_004166_p90 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 41301 | 41660 |
| NP_690696.1 | NC_004166_p40 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 19473 | 19913 |
| NP_690671.1 | NC_004166_p20 | protein of an unannotated phage | phrog_194 | head scaffolding protein | head and packaging | 1 | 6914 | 7558 |
| NP_690698.1 | NC_004166_p42 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 19929 | 20093 |
| NP_690728.1 | NC_004166_p72 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 33015 | 33485 |
| NP_690721.1 | NC_004166_p65 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 30362 | 30520 |
| NP_690679.1 | NC_004166_p28 | protein of an unannotated phage | phrog_176 | tail terminator | connector | 1 | 10063 | 10467 |
| NP_690673.1 | NC_004166_p22 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 7573 | 7767 |
| NP_690674.1 | NC_004166_p23 | protein of an unannotated phage | phrog_247 | major head protein | head and packaging | 1 | 7800 | 8774 |
| NP_690731.1 | NC_004166_p75 | protein of an unannotated phage | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 35578 | 36348 |
| NP_690677.1 | NC_004166_p26 | protein of an unannotated phage | phrog_25 | head closure Hc1 | connector | 1 | 9322 | 9651 |
| NP_690690.1 | NC_004166_p36 | protein of an unannotated phage | phrog_33 | distal tail protein Dit | tail | 1 | 15359 | 16120 |
| NP_690744.1 | NC_004166_p88 | protein of an unannotated phage | phrog_23955 | unknown function | unknown function | 1 | 40593 | 40895 |
| NP_690748.1 | NC_004166_p92 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 42080 | 42244 |
| NP_690689.1 | NC_004166_p35 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 14579 | 15034 |
| NP_690661.1 | NC_004166_p10 | protein of an unannotated phage | phrog_64 | portal protein | head and packaging | 1 | 2334 | 3845 |
| NP_690659.1 | NC_004166_p8 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 1781 | 2038 |
| NP_690711.1 | NC_004166_p55 | protein of an unannotated phage | phrog_17574 | unknown function | unknown function | 1 | 24207 | 24491 |
| NP_690655.1 | NC_004166_p4 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 429 | 725 |
| NP_690695.1 | NC_004166_p39 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 17111 | 17419 |
| NP_690691.1 | NC_004166_p37 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 15424 | 15648 |
| NP_690734.1 | NC_004166_p78 | protein of an unannotated phage | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 37148 | 38050 |
| NP_690676.1 | NC_004166_p25 | protein of an unannotated phage | phrog_1161 | head-tail adaptor | connector | 1 | 9012 | 9320 |
| NP_690742.1 | NC_004166_p86 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 39775 | 40293 |
| NP_690732.1 | NC_004166_p76 | protein of an unannotated phage | phrog_2289 | helicase loader | DNA, RNA and nucleotide metabolism | 1 | 36345 | 36725 |
| NP_690662.1 | NC_004166_p11 | protein of an unannotated phage | phrog_115 | minor head protein | head and packaging | 1 | 3802 | 4728 |
| NP_690666.1 | NC_004166_p15 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 5064 | 6212 |
| NP_690735.1 | NC_004166_p79 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 37294 | 37569 |
| NP_690717.1 | NC_004166_p61 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 26607 | 26993 |
| NP_690720.1 | NC_004166_p64 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 30009 | 30227 |
| NP_690743.1 | NC_004166_p87 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 40296 | 40484 |
| NP_690737.1 | NC_004166_p81 | protein of an unannotated phage | phrog_35666 | unknown function | unknown function | 1 | 38040 | 38567 |
| NP_690654.1 | NC_004166_p3 | protein of an unannotated phage | phrog_2 | terminase large subunit | head and packaging | 1 | 307 | 1575 |
| NP_690709.1 | NC_004166_p53 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 23672 | 23836 |
| NP_690753.1 | NC_004166_p97 | protein of an unannotated phage | phrog_8628 | unknown function | unknown function | 1 | 43399 | 43605 |
| NP_690707.1 | NC_004166_p51 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 23066 | 23368 |
| NP_690718.1 | NC_004166_p62 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 27006 | 27419 |
| NP_690713.1 | NC_004166_p57 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 24962 | 25279 |
| NP_690705.1 | NC_004166_p49 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 22274 | 22828 |
| NP_690730.1 | NC_004166_p74 | protein of an unannotated phage | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 35398 | 35571 |
| NP_690660.1 | NC_004166_p9 | protein of an unannotated phage | phrog_419 | unknown function | unknown function | 1 | 2063 | 2332 |
| NP_690739.1 | NC_004166_p83 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 38962 | 39132 |
| NP_690658.1 | NC_004166_p7 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 1668 | 1892 |