Genomic map of Lactobacillus phage phig1e (NC_004305)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_004305
Definition
Lactobacillus phage phig1e, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
42259
Host Name
Lactobacillus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
60
%GC
43.06
Number of singletons
17
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_695163.1 NC_004305_p29 minor capsid protein phrog_556 minor head protein head and packaging -1 22330 22680
YP_003084360.1 NC_004305_p56 hypothetical protein singleton unknown function unknown function -1 39767 40270
NP_695158.1 NC_004305_p24 minor capsid protein phrog_167 tail length tape measure protein tail -1 15416 20242
NP_695153.1 NC_004305_p17 hypothetical protein singleton unknown function unknown function -1 9302 9454
YP_003084359.1 NC_004305_p52 hypothetical protein phrog_270 replication initiation protein DNA, RNA and nucleotide metabolism -1 36809 37597
NP_695188.1 NC_004305_p59 hypothetical protein phrog_1124 transcriptional regulator transcription regulation -1 41002 41556
NP_695141.1 NC_004305_p3 hypothetical protein singleton unknown function unknown function -1 167 316
YP_003084357.1 NC_004305_p38 hypothetical protein singleton unknown function unknown function -1 30197 30475
YP_003084340.1 NC_004305_p14 lysin phrog_291 endolysin lysis -1 7167 8495
NP_695183.1 NC_004305_p51 zinc finger protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism -1 35986 36828
NP_695159.1 NC_004305_p25 hypothetical protein phrog_706 unknown function unknown function -1 20273 20869
NP_695148.1 NC_004305_p10 hypothetical protein phrog_374 HNH endonuclease DNA, RNA and nucleotide metabolism -1 4579 5277
NP_695142.1 NC_004305_p4 repressor phrog_3 transcriptional repressor transcription regulation -1 313 579
NP_695155.1 NC_004305_p19 minor capsid protein phrog_7158 unknown function unknown function -1 10532 12340
NP_695189.1 NC_004305_p60 hypothetical protein singleton unknown function unknown function 1 41666 41968
NP_695185.1 NC_004305_p54 hypothetical protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 38387 39061
NP_695140.1 NC_004305_p2 hypothetical protein singleton unknown function unknown function -1 42253 42259
NP_695140.1 NC_004305_p2 hypothetical protein singleton unknown function unknown function -1 1 170
NP_695173.1 NC_004305_p41 hypothetical protein phrog_3930 unknown function unknown function -1 32599 32886
NP_695157.1 NC_004305_p22 hypothetical protein phrog_326 tail protein with endopeptidase domain other -1 13476 14594
NP_695168.1 NC_004305_p34 minor capsid protein phrog_581 minor head protein head and packaging -1 25719 26762
NP_695165.1 NC_004305_p31 minor capsid protein phrog_247 major head protein head and packaging -1 23482 24537
NP_695179.1 NC_004305_p47 methyltransferase phrog_954 DNA methyltransferase other -1 34137 34622
NP_695186.1 NC_004305_p55 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 39063 39725
NP_695176.1 NC_004305_p44 possible sensor protein phrog_98 unknown function unknown function -1 33364 33711
NP_695181.1 NC_004305_p49 hypothetical protein singleton unknown function unknown function -1 34753 34983
NP_695169.1 NC_004305_p35 minor capsid protein phrog_533 portal protein head and packaging -1 26759 28285
YP_003084358.1 NC_004305_p39 hypothetical protein singleton unknown function unknown function -1 30636 31481
NP_695178.1 NC_004305_p46 hypothetical protein singleton unknown function unknown function -1 33914 34069
NP_695180.1 NC_004305_p48 hypothetical protein singleton unknown function unknown function -1 34619 34750
NP_695172.1 NC_004305_p40 hypothetical protein phrog_248 transcriptional activator transcription regulation -1 32077 32520
NP_695144.1 NC_004305_p6 hypothetical protein phrog_87 metallo-protease other 1 1153 1584
NP_695184.1 NC_004305_p53 hypothetical protein phrog_398 unknown function unknown function -1 37600 38328
NP_695167.1 NC_004305_p33 hypothetical protein phrog_34842 unknown function unknown function -1 25264 25518
NP_695162.1 NC_004305_p28 minor capsid protein phrog_913 minor head protein head and packaging -1 21926 22330
NP_695150.1 NC_004305_p12 hypothetical protein phrog_12732 unknown function unknown function -1 5881 6327
NP_695146.1 NC_004305_p8 exicionase singleton unknown function unknown function 1 2743 2943
NP_695151.1 NC_004305_p13 hypothetical protein singleton unknown function unknown function -1 6491 7018
NP_695182.1 NC_004305_p50 hypothetical protein phrog_20275 unknown function unknown function -1 35354 35854
NP_695147.1 NC_004305_p9 integrase phrog_1 integrase integration and excision 1 2948 4123
NP_695152.1 NC_004305_p15 holin singleton unknown function unknown function -1 8479 8907
YP_003084354.1 NC_004305_p16 hypothetical protein phrog_1009 unknown function unknown function -1 8930 9286
NP_695160.1 NC_004305_p26 minor capsid protein phrog_10257 minor head protein head and packaging -1 20875 21306
NP_695149.1 NC_004305_p11 hypothetical protein phrog_20251 unknown function unknown function -1 5281 5859
NP_695170.1 NC_004305_p36 terminase large subunit phrog_2 terminase large subunit head and packaging -1 28294 29637
YP_003084361.1 NC_004305_p57 hypothetical protein singleton unknown function unknown function 1 40412 40591
YP_003084356.1 NC_004305_p23 hypothetical protein phrog_33 distal tail protein Dit tail -1 14607 15416
NP_695175.1 NC_004305_p43 hypothetical protein phrog_3002 unknown function unknown function -1 33146 33367
YP_003084355.1 NC_004305_p21 hypothetical protein phrog_10588 tail protein tail -1 13190 13492
YP_003084353.1 NC_004305_p1 hypothetical protein phrog_10731 unknown function unknown function 1 1 121
YP_003084353.1 NC_004305_p1 hypothetical protein phrog_10731 unknown function unknown function 1 41880 42259
NP_695154.1 NC_004305_p18 minor capsid protein phrog_11663 minor head protein head and packaging -1 9732 10517
NP_695174.1 NC_004305_p42 hypothetical protein phrog_1494 unknown function unknown function -1 32898 33116
NP_695171.1 NC_004305_p37 terminase small subunit phrog_51 terminase small subunit head and packaging -1 29618 30136
NP_695145.1 NC_004305_p7 hypothetical protein singleton unknown function unknown function 1 1652 2566
NP_695156.1 NC_004305_p20 hypothetical protein singleton unknown function unknown function -1 12364 13212
NP_695187.1 NC_004305_p58 hypothetical protein phrog_823 unknown function unknown function -1 40643 40996
NP_695161.1 NC_004305_p27 minor capsid protein phrog_820 major tail protein tail -1 21356 21892
NP_695166.1 NC_004305_p32 minor capsid protein phrog_194 head scaffolding protein head and packaging -1 24554 25168
NP_695177.1 NC_004305_p45 hypothetical protein singleton unknown function unknown function -1 33727 33885
NP_695164.1 NC_004305_p30 minor capsid protein phrog_793 head-tail adaptor connector -1 22680 23033
NP_695143.1 NC_004305_p5 repressor phrog_8 transcriptional regulator transcription regulation 1 746 1144