| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_004313 |
Definition |
Salmonella phage ST64B, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae. |
DB of origin |
REFSEQ |
Length |
40149 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
51.01 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_700412.1 | NC_004313_p39 | DNA binding protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 28846 | 29070 |
| NP_700427.1 | NC_004313_p54 | hypothetical protein | phrog_129 | transcriptional regulator | transcription regulation | 1 | 38687 | 39106 |
| NP_700387.1 | NC_004313_p14 | Tail tube protein | phrog_185 | tail tube protein | tail | 1 | 9196 | 9552 |
| NP_700392.1 | NC_004313_p19 | base plate assembly protein | phrog_11 | baseplate spike | tail | 1 | 14317 | 14850 |
| NP_700386.1 | NC_004313_p13 | Tail Sheath protein | phrog_165 | tail sheath | tail | 1 | 7700 | 9196 |
| NP_700403.1 | NC_004313_p30 | Endodeoxyribonuclease | phrog_255 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 22475 | 23044 |
| NP_700411.1 | NC_004313_p38 | regulatory protein | phrog_4 | transcriptional repressor | transcription regulation | -1 | 28053 | 28748 |
| NP_700393.1 | NC_004313_p20 | tail protein | phrog_180 | baseplate wedge subunit | tail | 1 | 14855 | 15268 |
| NP_700390.1 | NC_004313_p17 | tail/DNA circulation protein | phrog_184 | baseplate hub | tail | 1 | 11922 | 12935 |
| NP_700379.1 | NC_004313_p6 | Major capsid protein precursor | phrog_10 | major head protein | head and packaging | 1 | 4318 | 5523 |
| NP_700377.1 | NC_004313_p4 | Portal Protein | phrog_12 | portal protein | head and packaging | 1 | 2431 | 3675 |
| NP_700375.1 | NC_004313_p2 | Terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 507 | 2240 |
| NP_700422.1 | NC_004313_p49 | hypothetical protein | phrog_753 | anti-termination protein Q-like | transcription regulation | 1 | 35492 | 36115 |
| NP_700429.1 | NC_004313_p56 | hypothetical protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 39689 | 40039 |
| NP_700374.1 | NC_004313_p1 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 16 | 510 |
| NP_700407.1 | NC_004313_p34 | hypothetical protein | phrog_5994 | unknown function | unknown function | -1 | 25004 | 25234 |
| NP_700380.1 | NC_004313_p7 | hypothetical protein | phrog_1020 | unknown function | unknown function | 1 | 5574 | 5774 |
| NP_700404.1 | NC_004313_p31 | hypothetical protein | phrog_60 | unknown function | unknown function | -1 | 23048 | 23881 |
| NP_700384.1 | NC_004313_p11 | hypothetical protein | phrog_209 | portal protein | head and packaging | 1 | 6982 | 7542 |
| NP_700415.1 | NC_004313_p42 | replication protein | phrog_270 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 31025 | 31843 |
| NP_700399.1 | NC_004313_p26 | hypothetical protein | phrog_3320 | unknown function | unknown function | -1 | 19334 | 20341 |
| NP_700394.1 | NC_004313_p21 | head assembly protein | phrog_2103 | baseplate protein | tail | 1 | 15240 | 15785 |
| NP_700385.1 | NC_004313_p12 | hypothetical protein | phrog_208 | unknown function | unknown function | 1 | 7546 | 7710 |
| NP_700405.1 | NC_004313_p32 | hypothetical protein | phrog_368 | unknown function | unknown function | -1 | 23878 | 24495 |
| NP_700425.1 | NC_004313_p52 | lytic enzyme ( glycohydrolase) | phrog_181 | endolysin | lysis | 1 | 37379 | 37993 |
| NP_700410.1 | NC_004313_p37 | hypothetical protein | phrog_204 | unknown function | unknown function | -1 | 26866 | 27237 |
| NP_700397.1 | NC_004313_p24 | tail protein | phrog_454 | tail fiber protein | tail | 1 | 16918 | 18480 |
| NP_700421.1 | NC_004313_p48 | hypothetical protein | phrog_23141 | unknown function | unknown function | 1 | 35221 | 35481 |
| NP_700419.1 | NC_004313_p46 | hypothetical protein | phrog_129 | transcriptional regulator | transcription regulation | 1 | 33623 | 34483 |
| NP_700428.1 | NC_004313_p55 | hypothetical protein | phrog_4827 | unknown function | unknown function | 1 | 39326 | 39628 |
| NP_700381.1 | NC_004313_p8 | hypothetical protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 5777 | 6100 |
| NP_700398.1 | NC_004313_p25 | Probable tail fiber assembly protein | phrog_136 | tail fiber assembly protein | tail | 1 | 18480 | 19049 |
| NP_700416.1 | NC_004313_p43 | transcriptional activator | phrog_1324 | transcriptional activator | transcription regulation | 1 | 31803 | 32327 |
| NP_700418.1 | NC_004313_p45 | holiday-junction resolvase | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 33217 | 33606 |
| NP_700400.1 | NC_004313_p27 | DNA invertase pin protein | singleton | unknown function | unknown function | 1 | 20554 | 20775 |
| NP_700389.1 | NC_004313_p16 | tail protein | phrog_28 | tail length tape measure protein | tail | 1 | 9960 | 11888 |
| NP_700402.1 | NC_004313_p29 | hypothetical protein | phrog_1266 | excisionase | integration and excision | -1 | 22208 | 22450 |
| NP_700417.1 | NC_004313_p44 | DNA methyltransferase | phrog_111 | DNA methyltransferase | other | 1 | 32327 | 33220 |
| NP_700406.1 | NC_004313_p33 | hypothetical protein | phrog_1583 | unknown function | unknown function | -1 | 24492 | 25007 |
| NP_700423.1 | NC_004313_p50 | hypothetical protein | phrog_3501 | unknown function | unknown function | 1 | 36146 | 36505 |
| NP_700391.1 | NC_004313_p18 | Tail protein | phrog_177 | baseplate hub | tail | 1 | 13259 | 14317 |
| NP_700378.1 | NC_004313_p5 | Pro-head protease | phrog_80 | head maturation protease | head and packaging | 1 | 3617 | 4303 |
| NP_700376.1 | NC_004313_p3 | integral membrane protein | phrog_502 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 2252 | 2434 |
| NP_700382.1 | NC_004313_p9 | hypothetical protein | phrog_25 | head closure Hc1 | connector | 1 | 6097 | 6501 |
| NP_700383.1 | NC_004313_p10 | hypothetical protein | phrog_879 | tail completion or Neck1 protein | connector | 1 | 6473 | 6985 |
| NP_700388.1 | NC_004313_p15 | hypothetical protein | phrog_166 | tail protein | tail | 1 | 9540 | 9875 |
| NP_700424.1 | NC_004313_p51 | lysis protein (holin) | singleton | holin/anti-holin | lysis | 1 | 37031 | 37342 |
| NP_700396.1 | NC_004313_p23 | tail protein | phrog_203 | baseplate wedge subunit | tail | 1 | 16344 | 16931 |
| NP_700409.1 | NC_004313_p36 | hypothetical protein | phrog_210 | unknown function | unknown function | -1 | 25981 | 26808 |
| NP_700408.1 | NC_004313_p35 | hypothetical protein | phrog_318 | deoxyribonucleoside 5' monophosphate phosphatase | other | -1 | 25305 | 25844 |
| NP_700395.1 | NC_004313_p22 | tail protein | phrog_1608 | tail protein | tail | 1 | 15820 | 16341 |
| NP_700413.1 | NC_004313_p40 | hypothetical protein | phrog_7487 | unknown function | unknown function | 1 | 29372 | 29653 |
| NP_700426.1 | NC_004313_p53 | lysis protein | phrog_13 | Rz-like spanin | lysis | 1 | 37990 | 38475 |
| NP_700401.1 | NC_004313_p28 | Integrase protein | phrog_1 | integrase | integration and excision | -1 | 21217 | 22206 |
| NP_700420.1 | NC_004313_p47 | hypothetical protein | phrog_96 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 34527 | 35246 |
| NP_700414.1 | NC_004313_p41 | antirepressor | phrog_821 | transcriptional regulator | transcription regulation | 1 | 29650 | 30807 |