Genomic map of Salmonella phage ST64B (NC_004313)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_004313
Definition
Salmonella phage ST64B, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
DB of origin
REFSEQ
Length
40149
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
51.01
Number of singletons
2
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_700412.1 NC_004313_p39 DNA binding protein phrog_3 transcriptional repressor transcription regulation 1 28846 29070
NP_700427.1 NC_004313_p54 hypothetical protein phrog_129 transcriptional regulator transcription regulation 1 38687 39106
NP_700387.1 NC_004313_p14 Tail tube protein phrog_185 tail tube protein tail 1 9196 9552
NP_700392.1 NC_004313_p19 base plate assembly protein phrog_11 baseplate spike tail 1 14317 14850
NP_700386.1 NC_004313_p13 Tail Sheath protein phrog_165 tail sheath tail 1 7700 9196
NP_700403.1 NC_004313_p30 Endodeoxyribonuclease phrog_255 exonuclease DNA, RNA and nucleotide metabolism -1 22475 23044
NP_700411.1 NC_004313_p38 regulatory protein phrog_4 transcriptional repressor transcription regulation -1 28053 28748
NP_700393.1 NC_004313_p20 tail protein phrog_180 baseplate wedge subunit tail 1 14855 15268
NP_700390.1 NC_004313_p17 tail/DNA circulation protein phrog_184 baseplate hub tail 1 11922 12935
NP_700379.1 NC_004313_p6 Major capsid protein precursor phrog_10 major head protein head and packaging 1 4318 5523
NP_700377.1 NC_004313_p4 Portal Protein phrog_12 portal protein head and packaging 1 2431 3675
NP_700375.1 NC_004313_p2 Terminase large subunit phrog_9 terminase large subunit head and packaging 1 507 2240
NP_700422.1 NC_004313_p49 hypothetical protein phrog_753 anti-termination protein Q-like transcription regulation 1 35492 36115
NP_700429.1 NC_004313_p56 hypothetical protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 39689 40039
NP_700374.1 NC_004313_p1 terminase small subunit phrog_83 terminase small subunit head and packaging 1 16 510
NP_700407.1 NC_004313_p34 hypothetical protein phrog_5994 unknown function unknown function -1 25004 25234
NP_700380.1 NC_004313_p7 hypothetical protein phrog_1020 unknown function unknown function 1 5574 5774
NP_700404.1 NC_004313_p31 hypothetical protein phrog_60 unknown function unknown function -1 23048 23881
NP_700384.1 NC_004313_p11 hypothetical protein phrog_209 portal protein head and packaging 1 6982 7542
NP_700415.1 NC_004313_p42 replication protein phrog_270 replication initiation protein DNA, RNA and nucleotide metabolism 1 31025 31843
NP_700399.1 NC_004313_p26 hypothetical protein phrog_3320 unknown function unknown function -1 19334 20341
NP_700394.1 NC_004313_p21 head assembly protein phrog_2103 baseplate protein tail 1 15240 15785
NP_700385.1 NC_004313_p12 hypothetical protein phrog_208 unknown function unknown function 1 7546 7710
NP_700405.1 NC_004313_p32 hypothetical protein phrog_368 unknown function unknown function -1 23878 24495
NP_700425.1 NC_004313_p52 lytic enzyme ( glycohydrolase) phrog_181 endolysin lysis 1 37379 37993
NP_700410.1 NC_004313_p37 hypothetical protein phrog_204 unknown function unknown function -1 26866 27237
NP_700397.1 NC_004313_p24 tail protein phrog_454 tail fiber protein tail 1 16918 18480
NP_700421.1 NC_004313_p48 hypothetical protein phrog_23141 unknown function unknown function 1 35221 35481
NP_700419.1 NC_004313_p46 hypothetical protein phrog_129 transcriptional regulator transcription regulation 1 33623 34483
NP_700428.1 NC_004313_p55 hypothetical protein phrog_4827 unknown function unknown function 1 39326 39628
NP_700381.1 NC_004313_p8 hypothetical protein phrog_40 head-tail adaptor Ad1 connector 1 5777 6100
NP_700398.1 NC_004313_p25 Probable tail fiber assembly protein phrog_136 tail fiber assembly protein tail 1 18480 19049
NP_700416.1 NC_004313_p43 transcriptional activator phrog_1324 transcriptional activator transcription regulation 1 31803 32327
NP_700418.1 NC_004313_p45 holiday-junction resolvase phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 33217 33606
NP_700400.1 NC_004313_p27 DNA invertase pin protein singleton unknown function unknown function 1 20554 20775
NP_700389.1 NC_004313_p16 tail protein phrog_28 tail length tape measure protein tail 1 9960 11888
NP_700402.1 NC_004313_p29 hypothetical protein phrog_1266 excisionase integration and excision -1 22208 22450
NP_700417.1 NC_004313_p44 DNA methyltransferase phrog_111 DNA methyltransferase other 1 32327 33220
NP_700406.1 NC_004313_p33 hypothetical protein phrog_1583 unknown function unknown function -1 24492 25007
NP_700423.1 NC_004313_p50 hypothetical protein phrog_3501 unknown function unknown function 1 36146 36505
NP_700391.1 NC_004313_p18 Tail protein phrog_177 baseplate hub tail 1 13259 14317
NP_700378.1 NC_004313_p5 Pro-head protease phrog_80 head maturation protease head and packaging 1 3617 4303
NP_700376.1 NC_004313_p3 integral membrane protein phrog_502 membrane protein moron, auxiliary metabolic gene and host takeover 1 2252 2434
NP_700382.1 NC_004313_p9 hypothetical protein phrog_25 head closure Hc1 connector 1 6097 6501
NP_700383.1 NC_004313_p10 hypothetical protein phrog_879 tail completion or Neck1 protein connector 1 6473 6985
NP_700388.1 NC_004313_p15 hypothetical protein phrog_166 tail protein tail 1 9540 9875
NP_700424.1 NC_004313_p51 lysis protein (holin) singleton holin/anti-holin lysis 1 37031 37342
NP_700396.1 NC_004313_p23 tail protein phrog_203 baseplate wedge subunit tail 1 16344 16931
NP_700409.1 NC_004313_p36 hypothetical protein phrog_210 unknown function unknown function -1 25981 26808
NP_700408.1 NC_004313_p35 hypothetical protein phrog_318 deoxyribonucleoside 5' monophosphate phosphatase other -1 25305 25844
NP_700395.1 NC_004313_p22 tail protein phrog_1608 tail protein tail 1 15820 16341
NP_700413.1 NC_004313_p40 hypothetical protein phrog_7487 unknown function unknown function 1 29372 29653
NP_700426.1 NC_004313_p53 lysis protein phrog_13 Rz-like spanin lysis 1 37990 38475
NP_700401.1 NC_004313_p28 Integrase protein phrog_1 integrase integration and excision -1 21217 22206
NP_700420.1 NC_004313_p47 hypothetical protein phrog_96 HNH endonuclease DNA, RNA and nucleotide metabolism 1 34527 35246
NP_700414.1 NC_004313_p41 antirepressor phrog_821 transcriptional regulator transcription regulation 1 29650 30807