Genomic map of Salmonella phage ST64T (NC_004348)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_004348
Definition
Enterobacteria phage ST64T, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Lederbergvirus.
DB of origin
REFSEQ
Length
40679
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
65
%GC
47.52
Number of singletons
2
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_720289.1 NC_004348_p15 hypothetical protein phrog_656 abc2 anti-RecBCD moron, auxiliary metabolic gene and host takeover -1 8738 9031
NP_720277.1 NC_004348_p3 O-antigen conversion protein A phrog_2224 GtrA-like O-antigen conversion moron, auxiliary metabolic gene and host takeover -1 2393 2755
NP_720283.1 NC_004348_p9 hypothetical protein phrog_60 unknown function unknown function -1 6045 6860
NP_720328.1 NC_004348_p54 scaffolding protein phrog_648 head scaffolding protein head and packaging 1 28022 28933
NP_720286.1 NC_004348_p12 hypothetical protein singleton unknown function unknown function -1 7974 8219
NP_720330.1 NC_004348_p56 hypothetical protein phrog_3769 unknown function unknown function 1 30266 30826
NP_720316.1 NC_004348_p42 hypothetical protein phrog_268 unknown function unknown function 1 20098 20301
NP_720279.1 NC_004348_p5 excisionase phrog_2907 excisionase integration and excision -1 4144 4494
NP_720322.1 NC_004348_p48 hypothetical protein phrog_571 unknown function unknown function 1 22709 23065
NP_720312.1 NC_004348_p38 hypothetical protein phrog_672 unknown function unknown function 1 18958 19131
NP_720288.1 NC_004348_p14 hypothetical protein phrog_1117 unknown function unknown function -1 8557 8727
NP_720339.1 NC_004348_p65 tail spike protein phrog_1819 tail spike protein tail 1 38634 40637
NP_720298.1 NC_004348_p24 antitermination protein phrog_271 anti-termination protein N-like transcription regulation -1 11997 12335
NP_720293.1 NC_004348_p19 hypothetical protein phrog_3924 Kil protein for bacterial septation inhibition other -1 10263 10376
NP_720282.1 NC_004348_p8 hypothetical protein phrog_60 unknown function unknown function -1 5503 6048
NP_720314.1 NC_004348_p40 hypothetical protein singleton unknown function unknown function 1 19299 19709
NP_720320.1 NC_004348_p46 hypothetical protein phrog_465 endolysin lysis 1 21680 22078
NP_720306.1 NC_004348_p32 hypothetical protein phrog_343 unknown function unknown function 1 17346 17606
NP_720284.1 NC_004348_p10 hypothetical protein phrog_1714 unknown function unknown function -1 6871 7134
NP_720326.1 NC_004348_p52 terminase large subunit phrog_2 terminase large subunit head and packaging 1 24278 25831
NP_720315.1 NC_004348_p41 endodeoxyribonuclease phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 19706 20101
NP_720296.1 NC_004348_p22 hypothetical protein phrog_923 unknown function unknown function -1 11086 11784
NP_720300.1 NC_004348_p26 antirepressor protein phrog_3 transcriptional repressor transcription regulation 1 13674 13889
NP_720335.1 NC_004348_p61 DNA transfer protein phrog_598 DNA ejection DNA, RNA and nucleotide metabolism 1 33788 34477
NP_720299.1 NC_004348_p25 repressor protein phrog_4 transcriptional repressor transcription regulation -1 12893 13597
NP_720295.1 NC_004348_p21 superinfection exclusion protein phrog_1510 superinfection exclusion moron, auxiliary metabolic gene and host takeover -1 10600 10914
NP_720307.1 NC_004348_p33 hypothetical protein phrog_5603 unknown function unknown function 1 17609 17905
NP_720276.1 NC_004348_p2 O-antigen conversion protein B phrog_841 GtrB-like O-antigen conversion moron, auxiliary metabolic gene and host takeover -1 1464 2441
NP_720338.1 NC_004348_p64 regulatory protein phrog_795 partition protein ATPase other -1 38250 38498
NP_720319.1 NC_004348_p45 holin protein phrog_785 holin lysis 1 21376 21693
NP_720302.1 NC_004348_p28 hypothetical protein phrog_345 replication initiation O-like DNA, RNA and nucleotide metabolism 1 14455 15354
NP_720327.1 NC_004348_p53 portal protein phrog_156 portal protein head and packaging 1 25831 28008
NP_720308.1 NC_004348_p34 hypothetical protein phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 18003 18308
NP_720336.1 NC_004348_p62 DNA transfer protein phrog_917 released from the phage upon host infection other 1 34487 35821
NP_720321.1 NC_004348_p47 hypothetical protein phrog_13 Rz-like spanin lysis 1 22075 22527
NP_720323.1 NC_004348_p49 hypothetical protein phrog_1365 unknown function unknown function 1 23069 23458
NP_720294.1 NC_004348_p20 hypothetical protein phrog_550 CIII anti-termination transcription regulation -1 10369 10536
NP_720332.1 NC_004348_p58 capsid portal closure protein phrog_578 head closure Hc3 connector 1 31270 32688
NP_720337.1 NC_004348_p63 DNA transfer protein phrog_770 DNA transfer protein other 1 35821 37797
NP_720318.1 NC_004348_p44 antitermination protein phrog_943 anti-termination protein Q-like transcription regulation 1 20458 20976
NP_720329.1 NC_004348_p55 coat protein phrog_283 major head protein head and packaging 1 28933 30225
NP_720310.1 NC_004348_p36 hypothetical protein phrog_288 unknown function unknown function 1 18445 18621
NP_720292.1 NC_004348_p18 hypothetical protein phrog_1723 recombinase other -1 10078 10278
NP_720303.1 NC_004348_p29 hypothetical protein phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 15344 16780
NP_720317.1 NC_004348_p43 hypothetical protein phrog_1402 unknown function unknown function 1 20282 20461
NP_720333.1 NC_004348_p59 capsid portal closure protein phrog_1219 tail needle protein tail 1 32692 33330
NP_720313.1 NC_004348_p39 hypothetical protein phrog_2529 unknown function unknown function 1 19121 19426
NP_720280.1 NC_004348_p6 Eac protein phrog_2260 unknown function unknown function -1 4497 5153
NP_720309.1 NC_004348_p35 hypothetical protein phrog_8091 unknown function unknown function 1 18278 18478
NP_720325.1 NC_004348_p51 terminase small subunit phrog_606 terminase small subunit head and packaging 1 23866 24354
NP_720324.1 NC_004348_p50 hypothetical protein phrog_3018 head decoration protein head and packaging 1 23458 23862
NP_720275.1 NC_004348_p1 O-antigen conversion protein C phrog_4829 GtrC-like O-antigen conversion translocase moron, auxiliary metabolic gene and host takeover -1 17 1474
NP_720305.1 NC_004348_p31 hypothetical protein phrog_1785 unknown function unknown function 1 17137 17346
NP_720311.1 NC_004348_p37 hypothetical protein phrog_444 unknown function unknown function 1 18618 18965
NP_720297.1 NC_004348_p23 hypothetical protein phrog_1055 restriction alleviation ral DNA, RNA and nucleotide metabolism -1 11724 11918
NP_720301.1 NC_004348_p27 transcriptional activator phrog_191 CII-like transcriptional activator transcription regulation 1 14000 14281
NP_720287.1 NC_004348_p13 hypothetical protein phrog_614 unknown function unknown function -1 8183 8560
NP_720331.1 NC_004348_p57 capsid portal closure protein phrog_637 head-tail adaptor Ad3 connector 1 30810 31310
NP_720291.1 NC_004348_p17 hypothetical protein phrog_1097 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 9362 10069
NP_720278.1 NC_004348_p4 integrase phrog_1 integrase integration and excision -1 3104 4267
NP_720285.1 NC_004348_p11 hypothetical protein phrog_1667 unknown function unknown function -1 7664 7993
NP_720281.1 NC_004348_p7 hypothetical protein phrog_2945 unknown function unknown function -1 5227 5406
NP_720334.1 NC_004348_p60 head assembly protein phrog_651 head morphogenesis head and packaging 1 33330 33785
NP_720290.1 NC_004348_p16 hypothetical protein phrog_323 transcriptional regulator, D5-like transcription regulation -1 9078 9362
NP_720304.1 NC_004348_p30 hypothetical protein phrog_667 unknown function unknown function 1 16855 17127