| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_004456 |
Definition |
Vibrio phage VHML, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Vhmlvirus. |
DB of origin |
REFSEQ |
Length |
43198 |
Host Name |
Vibrio harveyi |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
57 |
%GC |
50.61 |
Number of singletons |
11 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_758942.1 | NC_004456_p49 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40015 | 40362 |
| NP_758941.1 | NC_004456_p48 | hypothetical protein | phrog_10957 | unknown function | unknown function | -1 | 39708 | 40004 |
| NP_758898.1 | NC_004456_p5 | hypothetical protein | singleton | unknown function | unknown function | -1 | 5574 | 5792 |
| NP_758911.1 | NC_004456_p18 | hypothetical protein | phrog_7885 | unknown function | unknown function | 1 | 13798 | 14067 |
| NP_758906.1 | NC_004456_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10654 | 10857 |
| NP_758914.1 | NC_004456_p21 | hypothetical protein | phrog_57 | terminase small subunit | head and packaging | 1 | 15592 | 16173 |
| NP_758927.1 | NC_004456_p34 | hypothetical protein | phrog_3737 | tail fiber protein | tail | 1 | 26614 | 27096 |
| NP_758938.1 | NC_004456_p45 | hypothetical protein | phrog_3403 | unknown function | unknown function | 1 | 37708 | 38436 |
| NP_758950.1 | NC_004456_p57 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42880 | 43029 |
| NP_758910.1 | NC_004456_p17 | hypothetical protein | phrog_67 | DNA methyltransferase | other | 1 | 12635 | 13714 |
| NP_758894.1 | NC_004456_p1 | hypothetical protein | phrog_5272 | unknown function | unknown function | 1 | 297 | 1826 |
| NP_758896.1 | NC_004456_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2787 | 2996 |
| NP_758922.1 | NC_004456_p29 | hypothetical protein | phrog_1072 | unknown function | unknown function | 1 | 23268 | 23816 |
| NP_758915.1 | NC_004456_p22 | hypothetical protein | phrog_15 | terminase large subunit | head and packaging | 1 | 16079 | 17962 |
| NP_758905.1 | NC_004456_p12 | hypothetical protein | phrog_33293 | unknown function | unknown function | 1 | 10269 | 10640 |
| NP_758920.1 | NC_004456_p27 | hypothetical protein | phrog_22723 | unknown function | unknown function | 1 | 22406 | 22879 |
| NP_758931.1 | NC_004456_p38 | major tail sheath protein | phrog_23 | tail sheath | tail | 1 | 30452 | 31612 |
| NP_758900.1 | NC_004456_p7 | hypothetical protein | phrog_4834 | CII-like transcriptional activator | transcription regulation | 1 | 7156 | 7857 |
| NP_758930.1 | NC_004456_p37 | hypothetical protein | phrog_5714 | unknown function | unknown function | 1 | 30081 | 30356 |
| NP_758909.1 | NC_004456_p16 | hypothetical protein | singleton | unknown function | unknown function | -1 | 12093 | 12194 |
| NP_758924.1 | NC_004456_p31 | baseplate wedge subunit | phrog_43 | baseplate wedge subunit | tail | 1 | 24612 | 24941 |
| NP_758908.1 | NC_004456_p15 | hypothetical protein | phrog_24854 | unknown function | unknown function | 1 | 11868 | 12029 |
| NP_758912.1 | NC_004456_p19 | hypothetical protein | phrog_315 | endolysin | lysis | 1 | 14064 | 14621 |
| NP_758913.1 | NC_004456_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14637 | 15053 |
| NP_758934.1 | NC_004456_p41 | hypothetical protein | phrog_28 | tail length tape measure protein | tail | 1 | 32885 | 35956 |
| NP_758935.1 | NC_004456_p42 | hypothetical protein | phrog_76 | tail protein | tail | 1 | 35913 | 36434 |
| NP_758895.1 | NC_004456_p2 | hypothetical protein | phrog_8 | transcriptional regulator | transcription regulation | 1 | 2422 | 2790 |
| NP_758944.1 | NC_004456_p51 | hypothetical protein | phrog_23105 | unknown function | unknown function | -1 | 40875 | 41153 |
| NP_758929.1 | NC_004456_p36 | hypothetical protein | phrog_1423 | Reverse transcriptase | DNA, RNA and nucleotide metabolism | 1 | 29054 | 29965 |
| NP_758943.1 | NC_004456_p50 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40508 | 40684 |
| NP_758923.1 | NC_004456_p30 | hypothetical protein | phrog_11 | baseplate spike | tail | 1 | 23779 | 24396 |
| NP_758921.1 | NC_004456_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23083 | 23271 |
| NP_758917.1 | NC_004456_p24 | hypothetical protein | phrog_53 | head maturation protease | head and packaging | 1 | 19698 | 20978 |
| NP_758945.1 | NC_004456_p52 | hypothetical protein | phrog_18491 | unknown function | unknown function | -1 | 41336 | 41569 |
| NP_758933.1 | NC_004456_p40 | hypothetical protein | phrog_103 | tail protein | tail | 1 | 32429 | 32713 |
| NP_758926.1 | NC_004456_p33 | hypothetical protein | phrog_48 | tail protein | tail | 1 | 25871 | 26614 |
| NP_758903.1 | NC_004456_p10 | hypothetical protein | phrog_724 | exonuclease recombination-associated | DNA, RNA and nucleotide metabolism | 1 | 8889 | 9818 |
| NP_758918.1 | NC_004456_p25 | hypothetical protein | phrog_49 | head decoration | head and packaging | 1 | 20998 | 21309 |
| NP_758928.1 | NC_004456_p35 | hypothetical protein | phrog_2889 | unknown function | unknown function | 1 | 27155 | 28387 |
| NP_758899.1 | NC_004456_p6 | hypothetical protein | phrog_4 | transcriptional repressor | transcription regulation | -1 | 6454 | 7134 |
| NP_758940.1 | NC_004456_p47 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39577 | 39681 |
| NP_758897.1 | NC_004456_p4 | hypothetical protein | phrog_4913 | replication | DNA, RNA and nucleotide metabolism | -1 | 3041 | 5614 |
| NP_758939.1 | NC_004456_p46 | hypothetical protein | phrog_18886 | unknown function | unknown function | -1 | 38503 | 39393 |
| NP_758907.1 | NC_004456_p14 | hypothetical protein | phrog_26726 | unknown function | unknown function | 1 | 11269 | 11862 |
| NP_758916.1 | NC_004456_p23 | hypothetical protein | phrog_21 | portal protein | head and packaging | 1 | 18218 | 19705 |
| NP_758936.1 | NC_004456_p43 | hypothetical protein | phrog_46 | baseplate hub | tail | 1 | 36424 | 36630 |
| NP_758947.1 | NC_004456_p54 | hypothetical protein | phrog_15913 | unknown function | unknown function | -1 | 41816 | 42073 |
| NP_758937.1 | NC_004456_p44 | tail protein | phrog_52 | tail protein | tail | 1 | 36634 | 37515 |
| NP_758902.1 | NC_004456_p9 | hypothetical protein | phrog_37560 | unknown function | unknown function | 1 | 8385 | 8855 |
| NP_758901.1 | NC_004456_p8 | DksA-like zinc finger domain containing protein | phrog_54 | DksA-like zinc-finger protein | other | 1 | 8050 | 8277 |
| NP_758949.1 | NC_004456_p56 | ParA-like protein | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | -1 | 42133 | 42765 |
| NP_758925.1 | NC_004456_p32 | baseplate assembly protein | phrog_6 | baseplate wedge subunit | tail | 1 | 24943 | 25878 |
| NP_758904.1 | NC_004456_p11 | hypothetical protein | phrog_33293 | unknown function | unknown function | 1 | 9855 | 10223 |
| NP_758948.1 | NC_004456_p55 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42066 | 42188 |
| NP_758946.1 | NC_004456_p53 | hypothetical protein | phrog_27476 | unknown function | unknown function | -1 | 41574 | 41720 |
| NP_758932.1 | NC_004456_p39 | major tail tube protein | phrog_55 | head closure | connector | 1 | 31614 | 32117 |
| NP_758919.1 | NC_004456_p26 | hypothetical protein | phrog_29 | major head protein | head and packaging | 1 | 21433 | 22395 |