Genomic map of Vibrio phage VHML (NC_004456)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_004456
Definition
Vibrio phage VHML, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Vhmlvirus.
DB of origin
REFSEQ
Length
43198
Host Name
Vibrio harveyi
Host domain
Bacteria
Is prophage?
undef
Number of proteins
57
%GC
50.61
Number of singletons
11
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_758942.1 NC_004456_p49 hypothetical protein singleton unknown function unknown function -1 40015 40362
NP_758941.1 NC_004456_p48 hypothetical protein phrog_10957 unknown function unknown function -1 39708 40004
NP_758898.1 NC_004456_p5 hypothetical protein singleton unknown function unknown function -1 5574 5792
NP_758911.1 NC_004456_p18 hypothetical protein phrog_7885 unknown function unknown function 1 13798 14067
NP_758906.1 NC_004456_p13 hypothetical protein singleton unknown function unknown function 1 10654 10857
NP_758914.1 NC_004456_p21 hypothetical protein phrog_57 terminase small subunit head and packaging 1 15592 16173
NP_758927.1 NC_004456_p34 hypothetical protein phrog_3737 tail fiber protein tail 1 26614 27096
NP_758938.1 NC_004456_p45 hypothetical protein phrog_3403 unknown function unknown function 1 37708 38436
NP_758950.1 NC_004456_p57 hypothetical protein singleton unknown function unknown function -1 42880 43029
NP_758910.1 NC_004456_p17 hypothetical protein phrog_67 DNA methyltransferase other 1 12635 13714
NP_758894.1 NC_004456_p1 hypothetical protein phrog_5272 unknown function unknown function 1 297 1826
NP_758896.1 NC_004456_p3 hypothetical protein singleton unknown function unknown function -1 2787 2996
NP_758922.1 NC_004456_p29 hypothetical protein phrog_1072 unknown function unknown function 1 23268 23816
NP_758915.1 NC_004456_p22 hypothetical protein phrog_15 terminase large subunit head and packaging 1 16079 17962
NP_758905.1 NC_004456_p12 hypothetical protein phrog_33293 unknown function unknown function 1 10269 10640
NP_758920.1 NC_004456_p27 hypothetical protein phrog_22723 unknown function unknown function 1 22406 22879
NP_758931.1 NC_004456_p38 major tail sheath protein phrog_23 tail sheath tail 1 30452 31612
NP_758900.1 NC_004456_p7 hypothetical protein phrog_4834 CII-like transcriptional activator transcription regulation 1 7156 7857
NP_758930.1 NC_004456_p37 hypothetical protein phrog_5714 unknown function unknown function 1 30081 30356
NP_758909.1 NC_004456_p16 hypothetical protein singleton unknown function unknown function -1 12093 12194
NP_758924.1 NC_004456_p31 baseplate wedge subunit phrog_43 baseplate wedge subunit tail 1 24612 24941
NP_758908.1 NC_004456_p15 hypothetical protein phrog_24854 unknown function unknown function 1 11868 12029
NP_758912.1 NC_004456_p19 hypothetical protein phrog_315 endolysin lysis 1 14064 14621
NP_758913.1 NC_004456_p20 hypothetical protein singleton unknown function unknown function 1 14637 15053
NP_758934.1 NC_004456_p41 hypothetical protein phrog_28 tail length tape measure protein tail 1 32885 35956
NP_758935.1 NC_004456_p42 hypothetical protein phrog_76 tail protein tail 1 35913 36434
NP_758895.1 NC_004456_p2 hypothetical protein phrog_8 transcriptional regulator transcription regulation 1 2422 2790
NP_758944.1 NC_004456_p51 hypothetical protein phrog_23105 unknown function unknown function -1 40875 41153
NP_758929.1 NC_004456_p36 hypothetical protein phrog_1423 Reverse transcriptase DNA, RNA and nucleotide metabolism 1 29054 29965
NP_758943.1 NC_004456_p50 hypothetical protein singleton unknown function unknown function -1 40508 40684
NP_758923.1 NC_004456_p30 hypothetical protein phrog_11 baseplate spike tail 1 23779 24396
NP_758921.1 NC_004456_p28 hypothetical protein singleton unknown function unknown function 1 23083 23271
NP_758917.1 NC_004456_p24 hypothetical protein phrog_53 head maturation protease head and packaging 1 19698 20978
NP_758945.1 NC_004456_p52 hypothetical protein phrog_18491 unknown function unknown function -1 41336 41569
NP_758933.1 NC_004456_p40 hypothetical protein phrog_103 tail protein tail 1 32429 32713
NP_758926.1 NC_004456_p33 hypothetical protein phrog_48 tail protein tail 1 25871 26614
NP_758903.1 NC_004456_p10 hypothetical protein phrog_724 exonuclease recombination-associated DNA, RNA and nucleotide metabolism 1 8889 9818
NP_758918.1 NC_004456_p25 hypothetical protein phrog_49 head decoration head and packaging 1 20998 21309
NP_758928.1 NC_004456_p35 hypothetical protein phrog_2889 unknown function unknown function 1 27155 28387
NP_758899.1 NC_004456_p6 hypothetical protein phrog_4 transcriptional repressor transcription regulation -1 6454 7134
NP_758940.1 NC_004456_p47 hypothetical protein singleton unknown function unknown function -1 39577 39681
NP_758897.1 NC_004456_p4 hypothetical protein phrog_4913 replication DNA, RNA and nucleotide metabolism -1 3041 5614
NP_758939.1 NC_004456_p46 hypothetical protein phrog_18886 unknown function unknown function -1 38503 39393
NP_758907.1 NC_004456_p14 hypothetical protein phrog_26726 unknown function unknown function 1 11269 11862
NP_758916.1 NC_004456_p23 hypothetical protein phrog_21 portal protein head and packaging 1 18218 19705
NP_758936.1 NC_004456_p43 hypothetical protein phrog_46 baseplate hub tail 1 36424 36630
NP_758947.1 NC_004456_p54 hypothetical protein phrog_15913 unknown function unknown function -1 41816 42073
NP_758937.1 NC_004456_p44 tail protein phrog_52 tail protein tail 1 36634 37515
NP_758902.1 NC_004456_p9 hypothetical protein phrog_37560 unknown function unknown function 1 8385 8855
NP_758901.1 NC_004456_p8 DksA-like zinc finger domain containing protein phrog_54 DksA-like zinc-finger protein other 1 8050 8277
NP_758949.1 NC_004456_p56 ParA-like protein phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism -1 42133 42765
NP_758925.1 NC_004456_p32 baseplate assembly protein phrog_6 baseplate wedge subunit tail 1 24943 25878
NP_758904.1 NC_004456_p11 hypothetical protein phrog_33293 unknown function unknown function 1 9855 10223
NP_758948.1 NC_004456_p55 hypothetical protein singleton unknown function unknown function -1 42066 42188
NP_758946.1 NC_004456_p53 hypothetical protein phrog_27476 unknown function unknown function -1 41574 41720
NP_758932.1 NC_004456_p39 major tail tube protein phrog_55 head closure connector 1 31614 32117
NP_758919.1 NC_004456_p26 hypothetical protein phrog_29 major head protein head and packaging 1 21433 22395