Genomic map of Pseudomonas phage PaP3 (NC_004466)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_004466
Definition
Pseudomonas aeruginosa phage PaP3, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Bruynoghevirus.
DB of origin
REFSEQ
Length
45503
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
72
%GC
52.22
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_775240.1 NC_004466_p18 ORF.18 phrog_7725 virion structural protein head and packaging 1 14702 16225
NP_775199.1 NC_004466_p59 ORF.59 phrog_10516 unknown function unknown function -1 41797 42054
NP_775244.1 NC_004466_p14 ORF.14 phrog_8092 unknown function unknown function 1 12269 12958
NP_775228.1 NC_004466_p29 ORF.29 phrog_8565 unknown function unknown function -1 24670 24963
NP_955002.1 NC_004466_p72 ORF.71 phrog_14276 unknown function unknown function -1 45111 45416
NP_775250.1 NC_004466_p8 ORF.08 phrog_3982 unknown function unknown function 1 8702 9022
NP_775193.1 NC_004466_p65 ORF.65 phrog_8365 unknown function unknown function -1 43460 43699
NP_775217.1 NC_004466_p40 primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism -1 29834 31543
NP_775195.1 NC_004466_p63 ORF.63 phrog_24677 unknown function unknown function -1 42896 43144
NP_775219.1 NC_004466_p38 ORF.38 phrog_11010 unknown function unknown function -1 29062 29331
NP_954997.1 NC_004466_p30 ORF.30 phrog_5033 endolysin; inhibits RNA polymerase lysis -1 24935 25438
NP_775211.1 NC_004466_p46 ORF.46 phrog_7631 amidoligase enzyme other -1 35103 36299
NP_954999.1 NC_004466_p58 ORF.58 phrog_9861 unknown function unknown function -1 41526 41792
NP_775224.1 NC_004466_p33 ORF.33 phrog_9754 unknown function unknown function -1 27684 27896
YP_009227160.1 NC_004466_p71 hypothetical protein singleton unknown function unknown function 1 44741 45133
NP_775201.1 NC_004466_p57 ORF.57 phrog_11608 unknown function unknown function -1 41263 41526
NP_775192.1 NC_004466_p66 ORF.66 phrog_12073 unknown function unknown function -1 43830 43976
NP_775226.1 NC_004466_p31 ORF.31 phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 25416 25976
NP_775256.1 NC_004466_p2 lysozyme phrog_7 endolysin lysis 1 2370 2867
NP_955001.1 NC_004466_p70 ORF.70 phrog_1448 unknown function unknown function -1 44618 45100
NP_775249.1 NC_004466_p9 ORF.09 phrog_2941 virion structural protein head and packaging 1 9025 9651
NP_775235.1 NC_004466_p23 ORF.23 phrog_8402 unknown function unknown function -1 21271 21477
NP_775257.1 NC_004466_p1 ORF.01 phrog_51 terminase small subunit head and packaging 1 1979 2437
NP_775204.1 NC_004466_p54 ORF.54 phrog_11110 unknown function unknown function -1 40242 40454
NP_775197.1 NC_004466_p61 ORF.61 phrog_14185 unknown function unknown function -1 42363 42638
NP_775208.1 NC_004466_p49 ORF.49 phrog_7973 unknown function unknown function -1 37666 38613
NP_775237.1 NC_004466_p21 ORF.21 phrog_8259 unknown function unknown function 1 20492 20848
NP_775203.1 NC_004466_p55 ORF.55 phrog_8299 unknown function unknown function -1 40581 40994
NP_775253.1 NC_004466_p5 ORF.05 phrog_8161 unknown function unknown function 1 6487 6678
NP_775210.1 NC_004466_p47 ORF.47 phrog_4877 unknown function unknown function -1 36278 36856
NP_955000.1 NC_004466_p62 ORF.62 phrog_23405 unknown function unknown function -1 42640 42894
NP_775236.1 NC_004466_p22 ORF.22 phrog_12822 unknown function unknown function -1 20899 21258
NP_775254.1 NC_004466_p4 ORF.04 phrog_1216 portal protein head and packaging 1 4316 6433
NP_775229.1 NC_004466_p28 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism -1 23802 24686
NP_775198.1 NC_004466_p60 ORF.60 phrog_11682 unknown function unknown function -1 42064 42210
NP_775255.1 NC_004466_p3 terminase phrog_2 terminase large subunit head and packaging 1 2867 4315
NP_775243.1 NC_004466_p15 ORF.15 phrog_7642 unknown function unknown function 1 12955 13389
NP_775214.1 NC_004466_p43 ORF.43 phrog_2599 ribosomal protein S6 glutaminyl transferase moron, auxiliary metabolic gene and host takeover -1 32292 33182
NP_775222.1 NC_004466_p35 ORF.35 phrog_7045 holin lysis -1 28410 28694
NP_775189.1 NC_004466_p69 ORF.69 phrog_9596 unknown function unknown function -1 44327 44560
NP_775191.1 NC_004466_p67 ORF.67 phrog_22965 unknown function unknown function -1 44113 44193
NP_775215.1 NC_004466_p42 ORF.42 phrog_2520 gamma-glutamyl cyclotransferase moron, auxiliary metabolic gene and host takeover -1 31903 32292
NP_954996.1 NC_004466_p17 ORF.17 phrog_9927 virion structural protein head and packaging 1 14314 14697
NP_775206.1 NC_004466_p51 ORF.51 phrog_23893 unknown function unknown function -1 39667 39795
NP_775232.1 NC_004466_p25 ORF.25 phrog_221 metallo-phosphoesterase other -1 21891 22652
NP_775251.1 NC_004466_p7 major head protein phrog_1328 major head protein head and packaging 1 7701 8654
NP_775209.1 NC_004466_p48 ORF.48 phrog_3815 COOH.NH2 ligase other -1 36849 37655
NP_775190.1 NC_004466_p68 ORF.68 phrog_10887 unknown function unknown function -1 44190 44330
NP_775238.1 NC_004466_p20 ORF.20 phrog_8295 virion structural protein head and packaging 1 19562 20449
NP_775220.1 NC_004466_p37 ORF.37 phrog_9813 unknown function unknown function -1 28839 29030
NP_775202.1 NC_004466_p56 ORF.56 phrog_4955 unknown function unknown function -1 40991 41263
NP_775212.1 NC_004466_p45 ORF.45 phrog_4736 L-glutamine-D-fructose-6-phosphate aminotransferase other -1 33537 35090
NP_775225.1 NC_004466_p32 DNA polymerase1 phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 26046 27683
NP_775233.1 NC_004466_p24 ORF.24 phrog_9960 unknown function unknown function -1 21676 21894
NP_775246.1 NC_004466_p12 ORF.12 phrog_5795 tail protein tail 1 10075 10722
NP_775223.1 NC_004466_p34 ORF.34 phrog_7819 tail length tape measure protein tail -1 27886 28338
NP_775242.1 NC_004466_p16 ORF.16 phrog_7477 unknown function unknown function 1 13370 14314
NP_775247.1 NC_004466_p11 ORF.11 phrog_8140 unknown function unknown function 1 9837 10085
NP_775252.1 NC_004466_p6 ORF.06 phrog_3927 head scaffolding protein head and packaging 1 6678 7682
NP_775221.1 NC_004466_p36 ORF.36 phrog_9555 unknown function unknown function -1 28685 28849
NP_775231.1 NC_004466_p26 ORF.26 phrog_14437 endonuclease DNA, RNA and nucleotide metabolism -1 22645 22827
NP_954998.1 NC_004466_p52 ORF.52 phrog_14798 unknown function unknown function -1 39692 40021
NP_775213.1 NC_004466_p44 ORF.44 phrog_9335 unknown function unknown function -1 33309 33527
NP_775205.1 NC_004466_p53 ORF.53 phrog_36609 unknown function unknown function -1 40028 40249
NP_775245.1 NC_004466_p13 ORF.13 phrog_3287 virion structural protein head and packaging 1 10731 12272
NP_775207.1 NC_004466_p50 ORF.50 phrog_9504 unknown function unknown function -1 38616 39596
NP_775216.1 NC_004466_p41 ORF.41 phrog_8197 unknown function unknown function -1 31544 31906
NP_775218.1 NC_004466_p39 DNA polymerse2 phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism -1 29344 29871
NP_775230.1 NC_004466_p27 ORF.27 phrog_7967 unknown function unknown function -1 22847 23827
NP_775239.1 NC_004466_p19 ORF.19 phrog_6958 virion structural protein head and packaging 1 16381 19551
NP_775248.1 NC_004466_p10 ORF.10 phrog_402 unknown function unknown function 1 9662 9853
NP_775194.1 NC_004466_p64 ORF.64 phrog_20857 unknown function unknown function -1 43141 43371