| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_004585 |
Definition |
Streptococcus prophage 315.2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
41072 |
Host Name |
Streptococcus pyogenes |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
60 |
%GC |
38.25 |
Number of singletons |
3 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_795451.1 | NC_004585_p23 | hypothetical protein | phrog_9576 | unknown function | unknown function | 1 | 12569 | 12982 |
| NP_795478.1 | NC_004585_p50 | hyaluronidase N-terminal portion | phrog_2332 | hyaluronidase | other | 1 | 32536 | 33318 |
| NP_795472.1 | NC_004585_p44 | hypothetical protein | phrog_88 | major tail protein | tail | 1 | 24568 | 25179 |
| NP_795488.1 | NC_004585_p60 | hypothetical protein | phrog_2133 | unknown function | unknown function | 1 | 40714 | 40902 |
| NP_795456.1 | NC_004585_p28 | hypothetical protein | phrog_1071 | DNA methyltransferase | other | 1 | 14758 | 15393 |
| NP_795469.1 | NC_004585_p41 | hypothetical protein | phrog_25 | head closure Hc1 | connector | 1 | 23415 | 23753 |
| NP_795455.1 | NC_004585_p27 | hypothetical protein | phrog_2131 | unknown function | unknown function | 1 | 14357 | 14758 |
| NP_795440.1 | NC_004585_p12 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 5811 | 5996 |
| NP_795476.1 | NC_004585_p48 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 29691 | 30398 |
| NP_795441.1 | NC_004585_p13 | hypothetical protein | phrog_5866 | unknown function | unknown function | 1 | 6074 | 6370 |
| NP_795470.1 | NC_004585_p42 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 23750 | 24127 |
| NP_795487.1 | NC_004585_p59 | streptococcal superantigen SSA | phrog_1753 | enterotoxin type A / speL | moron, auxiliary metabolic gene and host takeover | 1 | 39819 | 40601 |
| NP_795480.1 | NC_004585_p52 | hypothetical protein | phrog_1899 | unknown function | unknown function | 1 | 33565 | 35448 |
| NP_795464.1 | NC_004585_p36 | hypothetical protein | phrog_12 | portal protein | head and packaging | 1 | 19898 | 21118 |
| NP_795433.1 | NC_004585_p5 | hypothetical protein | phrog_3634 | unknown function | unknown function | -1 | 3099 | 3878 |
| NP_795475.1 | NC_004585_p47 | hypothetical protein | phrog_1293 | tail length tape measure protein | tail | 1 | 25768 | 29691 |
| NP_795435.1 | NC_004585_p7 | hypothetical protein | phrog_5126 | unknown function | unknown function | -1 | 4130 | 4516 |
| NP_795445.1 | NC_004585_p17 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 7543 | 8223 |
| NP_795485.1 | NC_004585_p57 | cell wall hydrolase | phrog_1309 | endolysin | lysis | 1 | 37136 | 38344 |
| NP_795458.1 | NC_004585_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16390 | 16695 |
| NP_795467.1 | NC_004585_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22985 | 23113 |
| NP_795481.1 | NC_004585_p53 | hypothetical protein | phrog_1401 | unknown function | unknown function | 1 | 35460 | 35891 |
| NP_795462.1 | NC_004585_p34 | hypothetical protein | phrog_502 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 19435 | 19605 |
| NP_795453.1 | NC_004585_p25 | hypothetical protein | phrog_2625 | unknown function | unknown function | 1 | 13283 | 13486 |
| NP_795450.1 | NC_004585_p22 | DNA primase | phrog_7601 | unknown function | unknown function | 1 | 11435 | 12307 |
| NP_795454.1 | NC_004585_p26 | DNA methyltransferase | phrog_6151 | DNA methyltransferase | other | 1 | 13792 | 14166 |
| NP_795442.1 | NC_004585_p14 | hypothetical protein | phrog_1022 | unknown function | unknown function | 1 | 6367 | 6501 |
| NP_795482.1 | NC_004585_p54 | hypothetical protein | phrog_1554 | unknown function | unknown function | 1 | 35894 | 36511 |
| NP_795479.1 | NC_004585_p51 | hyaluronidase C-terminal portion | singleton | unknown function | unknown function | 1 | 33358 | 33480 |
| NP_795461.1 | NC_004585_p33 | hypothetical protein | phrog_9 | terminase large subunit | head and packaging | 1 | 17684 | 19438 |
| NP_795446.1 | NC_004585_p18 | DEAD box family helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 8325 | 9554 |
| NP_795431.1 | NC_004585_p3 | hypothetical protein | phrog_2253 | unknown function | unknown function | 1 | 2819 | 2965 |
| NP_795447.1 | NC_004585_p19 | hypothetical protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 9570 | 10028 |
| NP_795452.1 | NC_004585_p24 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 12979 | 13299 |
| NP_795443.1 | NC_004585_p15 | hypothetical protein | phrog_8 | transcriptional regulator | transcription regulation | 1 | 6517 | 6831 |
| NP_795434.1 | NC_004585_p6 | hypothetical protein | phrog_4345 | unknown function | unknown function | 1 | 3935 | 4141 |
| NP_795460.1 | NC_004585_p32 | hypothetical protein | phrog_83 | terminase small subunit | head and packaging | 1 | 17202 | 17669 |
| NP_795448.1 | NC_004585_p20 | hypothetical protein | phrog_695 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 10040 | 10843 |
| NP_795484.1 | NC_004585_p56 | holin | phrog_297 | holin | lysis | 1 | 36793 | 37020 |
| NP_795457.1 | NC_004585_p29 | hypothetical protein | phrog_248 | transcriptional activator | transcription regulation | 1 | 15666 | 16106 |
| NP_795483.1 | NC_004585_p55 | hypothetical protein | phrog_1296 | holin | lysis | 1 | 36521 | 36796 |
| NP_795459.1 | NC_004585_p31 | hypothetical protein | phrog_589 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 16692 | 17030 |
| NP_795486.1 | NC_004585_p58 | hypothetical protein | phrog_5978 | unknown function | unknown function | 1 | 38482 | 39606 |
| NP_795430.1 | NC_004585_p2 | repressor protein | phrog_4 | transcriptional repressor | transcription regulation | -1 | 1669 | 2457 |
| NP_795444.1 | NC_004585_p16 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 7060 | 7542 |
| NP_795432.1 | NC_004585_p4 | hypothetical protein | phrog_19402 | unknown function | unknown function | 1 | 2999 | 3163 |
| NP_795437.1 | NC_004585_p9 | hypothetical protein | phrog_7873 | unknown function | unknown function | 1 | 4841 | 5086 |
| NP_795436.1 | NC_004585_p8 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 4590 | 4829 |
| NP_795429.1 | NC_004585_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 146 | 1234 |
| NP_795449.1 | NC_004585_p21 | DNA primase | phrog_12939 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 10833 | 11387 |
| NP_795466.1 | NC_004585_p38 | hypothetical protein | phrog_10 | major head protein | head and packaging | 1 | 21787 | 22971 |
| NP_795465.1 | NC_004585_p37 | ClpP protease ATP-dependent protease proteolytic subunit | phrog_94 | head maturation protease | head and packaging | 1 | 21096 | 21761 |
| NP_795463.1 | NC_004585_p35 | hypothetical protein | phrog_903 | unknown function | unknown function | 1 | 19598 | 19864 |
| NP_795477.1 | NC_004585_p49 | hypothetical protein | phrog_2270 | unknown function | unknown function | 1 | 30563 | 32539 |
| NP_795468.1 | NC_004585_p40 | hypothetical protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 23116 | 23418 |
| NP_795439.1 | NC_004585_p11 | hypothetical protein | phrog_8544 | unknown function | unknown function | -1 | 5405 | 5644 |
| NP_795471.1 | NC_004585_p43 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 24124 | 24549 |
| NP_795473.1 | NC_004585_p45 | hypothetical protein | phrog_187 | head-tail adaptor | connector | 1 | 25232 | 25558 |
| NP_795474.1 | NC_004585_p46 | hypothetical protein | phrog_6190 | unknown function | unknown function | 1 | 25588 | 25755 |
| NP_795438.1 | NC_004585_p10 | hypothetical protein | phrog_8768 | unknown function | unknown function | -1 | 5045 | 5254 |