| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_004586 |
Definition |
Streptococcus pyogenes phage 315.3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
34419 |
Host Name |
Streptococcus pyogenes |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
52 |
%GC |
38.02 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_795493.1 | NC_004586_p5 | excisionase | phrog_904 | excisionase | integration and excision | 1 | 3341 | 3652 |
| NP_795508.1 | NC_004586_p20 | hypothetical protein | phrog_8505 | unknown function | unknown function | 1 | 10902 | 11057 |
| NP_795509.1 | NC_004586_p21 | hypothetical protein | phrog_4455 | unknown function | unknown function | 1 | 11054 | 11305 |
| NP_795514.1 | NC_004586_p26 | hypothetical protein | phrog_8561 | unknown function | unknown function | 1 | 14014 | 15507 |
| NP_795510.1 | NC_004586_p22 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 11381 | 11800 |
| NP_795502.1 | NC_004586_p14 | hypothetical protein | phrog_1227 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 6800 | 7597 |
| NP_795531.1 | NC_004586_p43 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 24538 | 25233 |
| NP_795532.1 | NC_004586_p44 | platelet-binding protein | phrog_2270 | unknown function | unknown function | 1 | 25215 | 27188 |
| NP_795524.1 | NC_004586_p36 | hypothetical protein | phrog_501 | head closure Hc1 | connector | 1 | 20009 | 20347 |
| NP_795496.1 | NC_004586_p8 | hypothetical protein | phrog_3682 | unknown function | unknown function | 1 | 4710 | 4943 |
| NP_795503.1 | NC_004586_p15 | hypothetical protein | phrog_7445 | unknown function | unknown function | 1 | 7962 | 8357 |
| NP_795538.1 | NC_004586_p50 | N-acetylmuramoyl-L-alanine amidase, lysin | phrog_3861 | amidase | lysis | 1 | 31728 | 32942 |
| NP_795489.1 | NC_004586_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 106 | 1248 |
| NP_795492.1 | NC_004586_p4 | Cro-like repressor protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 2859 | 3071 |
| NP_795520.1 | NC_004586_p32 | hypothetical protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 18020 | 18481 |
| NP_795537.1 | NC_004586_p49 | holin protein | phrog_199 | holin | lysis | 1 | 31161 | 31616 |
| NP_795495.1 | NC_004586_p7 | hypothetical protein | phrog_4016 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 4343 | 4729 |
| NP_795498.1 | NC_004586_p10 | hypothetical protein | phrog_18575 | unknown function | unknown function | 1 | 5351 | 5524 |
| NP_795525.1 | NC_004586_p37 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 20307 | 20576 |
| NP_795505.1 | NC_004586_p17 | hypothetical protein | phrog_1341 | unknown function | unknown function | 1 | 9711 | 10043 |
| NP_795539.1 | NC_004586_p51 | mitogenic factor | phrog_5170 | unknown function | unknown function | 1 | 33187 | 33981 |
| NP_795528.1 | NC_004586_p40 | hypothetical protein | phrog_1526 | unknown function | unknown function | 1 | 21529 | 21792 |
| NP_795519.1 | NC_004586_p31 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 16524 | 17939 |
| NP_795511.1 | NC_004586_p23 | hypothetical protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 11908 | 12252 |
| NP_795516.1 | NC_004586_p28 | hypothetical protein | phrog_9654 | unknown function | unknown function | 1 | 15814 | 15966 |
| NP_795500.1 | NC_004586_p12 | recombinase | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 5684 | 6610 |
| NP_795535.1 | NC_004586_p47 | hypothetical protein | phrog_1401 | unknown function | unknown function | 1 | 30102 | 30533 |
| NP_795540.1 | NC_004586_p52 | hypothetical protein | phrog_2133 | unknown function | unknown function | 1 | 34048 | 34230 |
| NP_795517.1 | NC_004586_p29 | hypothetical protein | phrog_903 | unknown function | unknown function | 1 | 15959 | 16225 |
| NP_795513.1 | NC_004586_p25 | structural protein | phrog_104 | portal protein | head and packaging | 1 | 12753 | 14021 |
| NP_795506.1 | NC_004586_p18 | hypothetical protein | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 10040 | 10552 |
| NP_795527.1 | NC_004586_p39 | structural protein | phrog_117 | major tail protein | tail | 1 | 20928 | 21518 |
| NP_795536.1 | NC_004586_p48 | hypothetical protein | phrog_1554 | unknown function | unknown function | 1 | 30536 | 31150 |
| NP_795529.1 | NC_004586_p41 | hypothetical protein | phrog_1633 | unknown function | unknown function | 1 | 21807 | 22178 |
| NP_795507.1 | NC_004586_p19 | hypothetical protein | phrog_884 | unknown function | unknown function | 1 | 10588 | 10905 |
| NP_795499.1 | NC_004586_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5529 | 5681 |
| NP_795494.1 | NC_004586_p6 | hypothetical protein | phrog_3050 | unknown function | unknown function | 1 | 3654 | 3839 |
| NP_795504.1 | NC_004586_p16 | hypothetical protein | phrog_7484 | unknown function | unknown function | 1 | 8354 | 9700 |
| NP_795521.1 | NC_004586_p33 | structural protein | phrog_10 | major head protein | head and packaging | 1 | 18506 | 19417 |
| NP_795533.1 | NC_004586_p45 | hyaluronoglucosaminidase | phrog_2332 | hyaluronidase | other | 1 | 27188 | 28297 |
| NP_795522.1 | NC_004586_p34 | hypothetical protein | phrog_1539 | Arc-like repressor | transcription regulation | 1 | 19417 | 19617 |
| NP_795491.1 | NC_004586_p3 | cI-like repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 1902 | 2657 |
| NP_795534.1 | NC_004586_p46 | hypothetical protein | phrog_1899 | unknown function | unknown function | 1 | 28312 | 30093 |
| NP_795497.1 | NC_004586_p9 | hypothetical protein | phrog_5514 | unknown function | unknown function | 1 | 5089 | 5295 |
| NP_795512.1 | NC_004586_p24 | hypothetical protein | phrog_2862 | unknown function | unknown function | 1 | 12400 | 12756 |
| NP_795490.1 | NC_004586_p2 | hypothetical protein | phrog_8043 | unknown function | unknown function | -1 | 1372 | 1890 |
| NP_795526.1 | NC_004586_p38 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 20577 | 20912 |
| NP_795530.1 | NC_004586_p42 | human platelet-binding protein | phrog_58 | tail length tape measure protein | tail | 1 | 22178 | 24541 |
| NP_795501.1 | NC_004586_p13 | hypothetical protein | phrog_6878 | unknown function | unknown function | 1 | 6607 | 6807 |
| NP_795515.1 | NC_004586_p27 | hypothetical protein | phrog_8665 | unknown function | unknown function | 1 | 15504 | 15737 |
| NP_795523.1 | NC_004586_p35 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 19627 | 20049 |
| NP_795518.1 | NC_004586_p30 | hypothetical protein | phrog_419 | unknown function | unknown function | 1 | 16173 | 16442 |