| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_004617 |
Definition |
Staphylococcus prophage phi 13, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Biseptimavirus. |
DB of origin |
REFSEQ |
Length |
42722 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
33.47 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_803357.1 | NC_004617_p2 | hypothetical protein | phrog_716 | Na/K ATPase | other | 1 | 1204 | 1818 |
| NP_803383.1 | NC_004617_p28 | phi PVL orf 4-like protein | phrog_83 | terminase small subunit | head and packaging | 1 | 17084 | 17551 |
| NP_803400.1 | NC_004617_p45 | phi PVL orf 17-like protein | phrog_276 | unknown function | unknown function | 1 | 36487 | 36717 |
| NP_803404.1 | NC_004617_p49 | involved in expression of fibrinogen binding protein | phrog_4954 | complement inhibitor | other | 1 | 41170 | 41520 |
| NP_803387.1 | NC_004617_p32 | prohead protease | phrog_80 | head maturation protease | head and packaging | 1 | 20711 | 21295 |
| NP_803399.1 | NC_004617_p44 | phi PVL orf 22-like protein | phrog_1747 | unknown function | unknown function | 1 | 36076 | 36363 |
| NP_803397.1 | NC_004617_p42 | phi PVL orfs 18-19-like protein | phrog_202 | distal tail protein Dit | tail | 1 | 30596 | 32086 |
| NP_803370.1 | NC_004617_p15 | phi ETA orf 22-like protein | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 9764 | 10624 |
| NP_803368.1 | NC_004617_p13 | phi ETA orf 18-like protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 8133 | 8684 |
| NP_803395.1 | NC_004617_p40 | phi PVL orf 14-like protein | phrog_187 | head-tail adaptor | connector | 1 | 25260 | 25706 |
| NP_803364.1 | NC_004617_p9 | phi PVL orf 38-like protein | phrog_369 | unknown function | unknown function | 1 | 6585 | 6746 |
| NP_803381.1 | NC_004617_p26 | phi PVL orf 62-like protein | phrog_229 | MazG-like pyrophosphatase | other | 1 | 16142 | 16594 |
| NP_803363.1 | NC_004617_p8 | phi PVL orf 35-like protein | phrog_845 | unknown function | unknown function | 1 | 5194 | 5391 |
| NP_803389.1 | NC_004617_p34 | phi PVL orf 8-like protein | phrog_933 | unknown function | unknown function | 1 | 22666 | 22824 |
| NP_803391.1 | NC_004617_p36 | phi PVL orf 10-like protein | phrog_25 | head closure Hc1 | connector | 1 | 23152 | 23487 |
| NP_803385.1 | NC_004617_p30 | phi PVL orf 3-like protein | phrog_1142 | unknown function | unknown function | 1 | 19223 | 19462 |
| NP_803374.1 | NC_004617_p19 | phi PVL orf 50-like protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 12405 | 12776 |
| NP_803393.1 | NC_004617_p38 | phi PVL orf 12-like protein | phrog_78 | tail terminator | connector | 1 | 23861 | 24241 |
| NP_803373.1 | NC_004617_p18 | phi ETA orf 25-like protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 11810 | 12214 |
| NP_803362.1 | NC_004617_p7 | anti-repressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 4429 | 5178 |
| NP_803384.1 | NC_004617_p29 | terminase-large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 17554 | 19248 |
| NP_803378.1 | NC_004617_p23 | phi PVL orf 52-like protein | phrog_266 | unknown function | unknown function | 1 | 13815 | 14069 |
| NP_803379.1 | NC_004617_p24 | phi ETA orf 34-like protein | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 14219 | 14755 |
| NP_803382.1 | NC_004617_p27 | phi PVL orf 63-like protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 16610 | 16954 |
| NP_803356.1 | NC_004617_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 59 | 1096 |
| NP_803390.1 | NC_004617_p35 | DNA packaging protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 22833 | 23165 |
| NP_803366.1 | NC_004617_p11 | phi ETA orf 16-like protein | phrog_946 | unknown function | unknown function | 1 | 7109 | 7330 |
| NP_803361.1 | NC_004617_p6 | phi PVL orf 33-like protein | phrog_10240 | unknown function | unknown function | -1 | 3833 | 4372 |
| NP_803380.1 | NC_004617_p25 | phi PVL orf 61-like protein | phrog_1058 | unknown function | unknown function | 1 | 15557 | 16027 |
| NP_803372.1 | NC_004617_p17 | phi SLT orf 24-like protein | phrog_433 | unknown function | unknown function | 1 | 11578 | 11799 |
| NP_803359.1 | NC_004617_p4 | repressor-like protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 3307 | 3531 |
| NP_803402.1 | NC_004617_p47 | amidase | phrog_635 | endolysin | lysis | 1 | 37521 | 38276 |
| NP_803394.1 | NC_004617_p39 | phi PVL orf 13-like protein | phrog_88 | major tail protein | tail | 1 | 24242 | 25195 |
| NP_803377.1 | NC_004617_p22 | phi PV83 orf 27-like protein | phrog_742 | acetyltransferase | other | 1 | 13433 | 13822 |
| NP_803367.1 | NC_004617_p12 | phi ETA orf 17-like protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 7323 | 8102 |
| NP_803376.1 | NC_004617_p21 | possible sensor protein | phrog_98 | unknown function | unknown function | 1 | 13089 | 13436 |
| NP_803360.1 | NC_004617_p5 | phi PVL orf 32-like protein | phrog_6175 | unknown function | unknown function | 1 | 3528 | 3809 |
| NP_803369.1 | NC_004617_p14 | phi ETA orf 20-like protein | phrog_398 | unknown function | unknown function | 1 | 8697 | 9368 |
| NP_803398.1 | NC_004617_p43 | structural protein | phrog_1786 | minor head protein | head and packaging | 1 | 32210 | 35887 |
| NP_803392.1 | NC_004617_p37 | phi PVL orf 11-like protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 23487 | 23864 |
| NP_803358.1 | NC_004617_p3 | cI-like repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 2378 | 3148 |
| NP_803396.1 | NC_004617_p41 | tail length tape measure protein | phrog_167 | tail length tape measure protein | tail | 1 | 25944 | 30596 |
| NP_803386.1 | NC_004617_p31 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 19393 | 20718 |
| NP_803365.1 | NC_004617_p10 | phi PVL orf 39-like protein | phrog_401 | unknown function | unknown function | 1 | 6839 | 7099 |
| NP_803403.1 | NC_004617_p48 | staphylokinase | phrog_4358 | kinase | other | 1 | 38467 | 38958 |
| NP_803375.1 | NC_004617_p20 | phi PVL orf 51-like protein | phrog_258 | virulence associated | other | 1 | 12777 | 13025 |
| NP_803401.1 | NC_004617_p46 | holin | phrog_297 | holin | lysis | 1 | 37255 | 37509 |
| NP_803388.1 | NC_004617_p33 | head protein | phrog_10 | major head protein | head and packaging | 1 | 21383 | 22630 |
| NP_803371.1 | NC_004617_p16 | dnaC | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 10634 | 11413 |