Genomic map of Staphylococcus virus 13 (NC_004617)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_004617
Definition
Staphylococcus prophage phi 13, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Biseptimavirus.
DB of origin
REFSEQ
Length
42722
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
49
%GC
33.47
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_803357.1 NC_004617_p2 hypothetical protein phrog_716 Na/K ATPase other 1 1204 1818
NP_803383.1 NC_004617_p28 phi PVL orf 4-like protein phrog_83 terminase small subunit head and packaging 1 17084 17551
NP_803400.1 NC_004617_p45 phi PVL orf 17-like protein phrog_276 unknown function unknown function 1 36487 36717
NP_803404.1 NC_004617_p49 involved in expression of fibrinogen binding protein phrog_4954 complement inhibitor other 1 41170 41520
NP_803387.1 NC_004617_p32 prohead protease phrog_80 head maturation protease head and packaging 1 20711 21295
NP_803399.1 NC_004617_p44 phi PVL orf 22-like protein phrog_1747 unknown function unknown function 1 36076 36363
NP_803397.1 NC_004617_p42 phi PVL orfs 18-19-like protein phrog_202 distal tail protein Dit tail 1 30596 32086
NP_803370.1 NC_004617_p15 phi ETA orf 22-like protein phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 9764 10624
NP_803368.1 NC_004617_p13 phi ETA orf 18-like protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 8133 8684
NP_803395.1 NC_004617_p40 phi PVL orf 14-like protein phrog_187 head-tail adaptor connector 1 25260 25706
NP_803364.1 NC_004617_p9 phi PVL orf 38-like protein phrog_369 unknown function unknown function 1 6585 6746
NP_803381.1 NC_004617_p26 phi PVL orf 62-like protein phrog_229 MazG-like pyrophosphatase other 1 16142 16594
NP_803363.1 NC_004617_p8 phi PVL orf 35-like protein phrog_845 unknown function unknown function 1 5194 5391
NP_803389.1 NC_004617_p34 phi PVL orf 8-like protein phrog_933 unknown function unknown function 1 22666 22824
NP_803391.1 NC_004617_p36 phi PVL orf 10-like protein phrog_25 head closure Hc1 connector 1 23152 23487
NP_803385.1 NC_004617_p30 phi PVL orf 3-like protein phrog_1142 unknown function unknown function 1 19223 19462
NP_803374.1 NC_004617_p19 phi PVL orf 50-like protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 12405 12776
NP_803393.1 NC_004617_p38 phi PVL orf 12-like protein phrog_78 tail terminator connector 1 23861 24241
NP_803373.1 NC_004617_p18 phi ETA orf 25-like protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 11810 12214
NP_803362.1 NC_004617_p7 anti-repressor phrog_63 anti-repressor Ant transcription regulation 1 4429 5178
NP_803384.1 NC_004617_p29 terminase-large subunit phrog_9 terminase large subunit head and packaging 1 17554 19248
NP_803378.1 NC_004617_p23 phi PVL orf 52-like protein phrog_266 unknown function unknown function 1 13815 14069
NP_803379.1 NC_004617_p24 phi ETA orf 34-like protein phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 14219 14755
NP_803382.1 NC_004617_p27 phi PVL orf 63-like protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 16610 16954
NP_803356.1 NC_004617_p1 integrase phrog_1 integrase integration and excision -1 59 1096
NP_803390.1 NC_004617_p35 DNA packaging protein phrog_40 head-tail adaptor Ad1 connector 1 22833 23165
NP_803366.1 NC_004617_p11 phi ETA orf 16-like protein phrog_946 unknown function unknown function 1 7109 7330
NP_803361.1 NC_004617_p6 phi PVL orf 33-like protein phrog_10240 unknown function unknown function -1 3833 4372
NP_803380.1 NC_004617_p25 phi PVL orf 61-like protein phrog_1058 unknown function unknown function 1 15557 16027
NP_803372.1 NC_004617_p17 phi SLT orf 24-like protein phrog_433 unknown function unknown function 1 11578 11799
NP_803359.1 NC_004617_p4 repressor-like protein phrog_3 transcriptional repressor transcription regulation 1 3307 3531
NP_803402.1 NC_004617_p47 amidase phrog_635 endolysin lysis 1 37521 38276
NP_803394.1 NC_004617_p39 phi PVL orf 13-like protein phrog_88 major tail protein tail 1 24242 25195
NP_803377.1 NC_004617_p22 phi PV83 orf 27-like protein phrog_742 acetyltransferase other 1 13433 13822
NP_803367.1 NC_004617_p12 phi ETA orf 17-like protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 7323 8102
NP_803376.1 NC_004617_p21 possible sensor protein phrog_98 unknown function unknown function 1 13089 13436
NP_803360.1 NC_004617_p5 phi PVL orf 32-like protein phrog_6175 unknown function unknown function 1 3528 3809
NP_803369.1 NC_004617_p14 phi ETA orf 20-like protein phrog_398 unknown function unknown function 1 8697 9368
NP_803398.1 NC_004617_p43 structural protein phrog_1786 minor head protein head and packaging 1 32210 35887
NP_803392.1 NC_004617_p37 phi PVL orf 11-like protein phrog_5 tail completion or Neck1 protein connector 1 23487 23864
NP_803358.1 NC_004617_p3 cI-like repressor phrog_4 transcriptional repressor transcription regulation -1 2378 3148
NP_803396.1 NC_004617_p41 tail length tape measure protein phrog_167 tail length tape measure protein tail 1 25944 30596
NP_803386.1 NC_004617_p31 portal protein phrog_12 portal protein head and packaging 1 19393 20718
NP_803365.1 NC_004617_p10 phi PVL orf 39-like protein phrog_401 unknown function unknown function 1 6839 7099
NP_803403.1 NC_004617_p48 staphylokinase phrog_4358 kinase other 1 38467 38958
NP_803375.1 NC_004617_p20 phi PVL orf 51-like protein phrog_258 virulence associated other 1 12777 13025
NP_803401.1 NC_004617_p46 holin phrog_297 holin lysis 1 37255 37509
NP_803388.1 NC_004617_p33 head protein phrog_10 major head protein head and packaging 1 21383 22630
NP_803371.1 NC_004617_p16 dnaC phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 10634 11413