Genomic map of Pseudomonad phage gh-1 (gh-1) (NC_004665)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_004665
Definition
Pseudomonas phage gh-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Ghunavirus.
DB of origin
REFSEQ
Length
37359
Host Name
Pseudomonas putida
Host domain
Bacteria
Is prophage?
undef
Number of proteins
42
%GC
57.41
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_813751.1 NC_004665_p5 ATP-dependent DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 4533 5597
NP_813750.1 NC_004665_p4 hypothetical protein phrog_12775 unknown function unknown function 1 4135 4521
NP_813780.1 NC_004665_p34 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 27439 31617
NP_813755.1 NC_004665_p9 hypothetical protein phrog_5138 unknown function unknown function 1 6853 7218
NP_813786.1 NC_004665_p40 DNA packaging protein B phrog_38 terminase large subunit head and packaging 1 34852 36600
NP_813757.1 NC_004665_p11 endonuclease I phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 7973 8416
NP_813777.1 NC_004665_p31 internal virion protein A phrog_308 internal virion protein head and packaging 1 24184 24618
NP_813775.1 NC_004665_p29 tail tubular protein A phrog_446 tail protein tail 1 21101 21688
NP_813783.1 NC_004665_p37 type II holin phrog_920 holin lysis 1 33934 34149
NP_813748.1 NC_004665_p2 hypothetical protein phrog_13030 RNA polymerase DNA, RNA and nucleotide metabolism 1 3729 3866
NP_813769.1 NC_004665_p23 hypothetical protein phrog_1391 unknown function unknown function 1 16318 16590
NP_813770.1 NC_004665_p24 hypothetical protein phrog_3986 unknown function unknown function 1 16587 17030
NP_813766.1 NC_004665_p20 hypothetical protein phrog_1334 unknown function unknown function 1 14854 15063
NP_813764.1 NC_004665_p18 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 12338 14467
NP_813788.1 NC_004665_p42 hypothetical protein phrog_2193 unknown function unknown function 1 36779 36952
NP_813761.1 NC_004665_p15 primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 9844 11532
NP_813763.1 NC_004665_p17 hypothetical protein phrog_9312 unknown function unknown function 1 11818 12327
NP_813787.1 NC_004665_p41 hypothetical protein singleton unknown function unknown function 1 36603 36680
NP_813771.1 NC_004665_p25 tail assembly protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 17002 17304
NP_813772.1 NC_004665_p26 head-tail connector protein phrog_449 head-tail adaptor connector 1 17319 18950
NP_813767.1 NC_004665_p21 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 15060 16004
NP_813765.1 NC_004665_p19 hypothetical protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 14478 14861
NP_813762.1 NC_004665_p16 hypothetical protein phrog_9727 unknown function unknown function 1 11551 11754
NP_813753.1 NC_004665_p7 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 6045 6692
NP_813752.1 NC_004665_p6 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 5790 6692
NP_813782.1 NC_004665_p36 hypothetical protein phrog_1795 tail fiber protein tail 1 33575 33934
NP_813768.1 NC_004665_p22 hypothetical protein phrog_1447 unknown function unknown function 1 16073 16315
NP_813773.1 NC_004665_p27 capsid assembly protein phrog_1052 head assembly head and packaging 1 19019 19894
NP_813778.1 NC_004665_p32 internal virion protein B phrog_805 internal virion protein head and packaging 1 24629 25210
NP_813749.1 NC_004665_p3 hypothetical protein phrog_11287 unknown function unknown function 1 3863 4135
NP_813756.1 NC_004665_p10 single-stranded DNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 7272 7973
NP_813781.1 NC_004665_p35 tail fiber protein phrog_4242 tail fiber protein tail 1 31680 33536
NP_813779.1 NC_004665_p33 internal virion protein C phrog_1339 internal virion protein head and packaging 1 25210 27426
NP_813754.1 NC_004665_p8 host RNA-polymerase inhibitor phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 6689 6856
NP_813774.1 NC_004665_p28 major capsid protein phrog_267 major head protein head and packaging 1 19994 21037
NP_813776.1 NC_004665_p30 tail tubular protein B phrog_457 tail protein tail 1 21698 24124
NP_813759.1 NC_004665_p13 hypothetical protein phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 8929 9483
NP_813747.1 NC_004665_p1 T3/T7-like RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 1058 3715
NP_813758.1 NC_004665_p12 lysozyme phrog_822 amidase lysis 1 8419 8859
NP_813785.1 NC_004665_p39 phage lambda Rz-like lysis protein phrog_1327 Rz-like spanin lysis 1 34403 34852
NP_813760.1 NC_004665_p14 NHN endonuclease phrog_4578 HNH endonuclease DNA, RNA and nucleotide metabolism 1 9470 9835
NP_813784.1 NC_004665_p38 DNA packaging protein, small subunit phrog_1351 terminase small subunit head and packaging 1 34146 34403