| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_004665 |
Definition |
Pseudomonas phage gh-1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Ghunavirus. |
DB of origin |
REFSEQ |
Length |
37359 |
Host Name |
Pseudomonas putida |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
42 |
%GC |
57.41 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_813751.1 | NC_004665_p5 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 4533 | 5597 |
| NP_813750.1 | NC_004665_p4 | hypothetical protein | phrog_12775 | unknown function | unknown function | 1 | 4135 | 4521 |
| NP_813780.1 | NC_004665_p34 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 27439 | 31617 |
| NP_813755.1 | NC_004665_p9 | hypothetical protein | phrog_5138 | unknown function | unknown function | 1 | 6853 | 7218 |
| NP_813786.1 | NC_004665_p40 | DNA packaging protein B | phrog_38 | terminase large subunit | head and packaging | 1 | 34852 | 36600 |
| NP_813757.1 | NC_004665_p11 | endonuclease I | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 7973 | 8416 |
| NP_813777.1 | NC_004665_p31 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 24184 | 24618 |
| NP_813775.1 | NC_004665_p29 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 21101 | 21688 |
| NP_813783.1 | NC_004665_p37 | type II holin | phrog_920 | holin | lysis | 1 | 33934 | 34149 |
| NP_813748.1 | NC_004665_p2 | hypothetical protein | phrog_13030 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 3729 | 3866 |
| NP_813769.1 | NC_004665_p23 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 16318 | 16590 |
| NP_813770.1 | NC_004665_p24 | hypothetical protein | phrog_3986 | unknown function | unknown function | 1 | 16587 | 17030 |
| NP_813766.1 | NC_004665_p20 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 14854 | 15063 |
| NP_813764.1 | NC_004665_p18 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 12338 | 14467 |
| NP_813788.1 | NC_004665_p42 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 36779 | 36952 |
| NP_813761.1 | NC_004665_p15 | primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 9844 | 11532 |
| NP_813763.1 | NC_004665_p17 | hypothetical protein | phrog_9312 | unknown function | unknown function | 1 | 11818 | 12327 |
| NP_813787.1 | NC_004665_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36603 | 36680 |
| NP_813771.1 | NC_004665_p25 | tail assembly protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 17002 | 17304 |
| NP_813772.1 | NC_004665_p26 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 17319 | 18950 |
| NP_813767.1 | NC_004665_p21 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 15060 | 16004 |
| NP_813765.1 | NC_004665_p19 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 14478 | 14861 |
| NP_813762.1 | NC_004665_p16 | hypothetical protein | phrog_9727 | unknown function | unknown function | 1 | 11551 | 11754 |
| NP_813753.1 | NC_004665_p7 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 6045 | 6692 |
| NP_813752.1 | NC_004665_p6 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 5790 | 6692 |
| NP_813782.1 | NC_004665_p36 | hypothetical protein | phrog_1795 | tail fiber protein | tail | 1 | 33575 | 33934 |
| NP_813768.1 | NC_004665_p22 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 16073 | 16315 |
| NP_813773.1 | NC_004665_p27 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 19019 | 19894 |
| NP_813778.1 | NC_004665_p32 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 24629 | 25210 |
| NP_813749.1 | NC_004665_p3 | hypothetical protein | phrog_11287 | unknown function | unknown function | 1 | 3863 | 4135 |
| NP_813756.1 | NC_004665_p10 | single-stranded DNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 7272 | 7973 |
| NP_813781.1 | NC_004665_p35 | tail fiber protein | phrog_4242 | tail fiber protein | tail | 1 | 31680 | 33536 |
| NP_813779.1 | NC_004665_p33 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 25210 | 27426 |
| NP_813754.1 | NC_004665_p8 | host RNA-polymerase inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 6689 | 6856 |
| NP_813774.1 | NC_004665_p28 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 19994 | 21037 |
| NP_813776.1 | NC_004665_p30 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 21698 | 24124 |
| NP_813759.1 | NC_004665_p13 | hypothetical protein | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 8929 | 9483 |
| NP_813747.1 | NC_004665_p1 | T3/T7-like RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 1058 | 3715 |
| NP_813758.1 | NC_004665_p12 | lysozyme | phrog_822 | amidase | lysis | 1 | 8419 | 8859 |
| NP_813785.1 | NC_004665_p39 | phage lambda Rz-like lysis protein | phrog_1327 | Rz-like spanin | lysis | 1 | 34403 | 34852 |
| NP_813760.1 | NC_004665_p14 | NHN endonuclease | phrog_4578 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9470 | 9835 |
| NP_813784.1 | NC_004665_p38 | DNA packaging protein, small subunit | phrog_1351 | terminase small subunit | head and packaging | 1 | 34146 | 34403 |