| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_004678 |
Definition |
Staphylococcus phage 44AHJD, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Rakietenvirinae; Rosenblumvirus. |
DB of origin |
REFSEQ |
Length |
16784 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
21 |
%GC |
29.62 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_817299.1 | NC_004678_p4 | hypothetical protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 1107 | 1475 |
| NP_817303.1 | NC_004678_p8 | hypothetical protein | phrog_6099 | unknown function | unknown function | 1 | 2280 | 2762 |
| NP_817311.1 | NC_004678_p16 | minor structural protein | phrog_287 | minor tail protein | tail | -1 | 10968 | 12911 |
| NP_817305.1 | NC_004678_p10 | DNA polymerase | phrog_1907 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 4091 | 6358 |
| NP_817297.1 | NC_004678_p2 | hypothetical protein | phrog_6274 | unknown function | unknown function | 1 | 528 | 830 |
| NP_817300.1 | NC_004678_p5 | hypothetical protein | phrog_7019 | unknown function | unknown function | 1 | 1525 | 1701 |
| NP_817315.1 | NC_004678_p20 | hypothetical protein | phrog_6289 | unknown function | unknown function | -1 | 15904 | 16086 |
| NP_817312.1 | NC_004678_p17 | lower collar protein | phrog_3225 | adaptor Ad4 | connector | -1 | 12925 | 13680 |
| NP_817314.1 | NC_004678_p19 | major capsid protein | phrog_2006 | major head protein | head and packaging | -1 | 14671 | 15897 |
| NP_817298.1 | NC_004678_p3 | hypothetical protein | phrog_6346 | unknown function | unknown function | 1 | 848 | 1084 |
| NP_817307.1 | NC_004678_p12 | holin | phrog_199 | holin | lysis | -1 | 7887 | 8309 |
| NP_817296.1 | NC_004678_p1 | hypothetical protein | phrog_10178 | unknown function | unknown function | 1 | 338 | 535 |
| NP_817313.1 | NC_004678_p18 | upper collar protein | phrog_2038 | upper collar connector | connector | -1 | 13673 | 14422 |
| NP_817302.1 | NC_004678_p7 | hypothetical protein | phrog_8543 | unknown function | unknown function | 1 | 2107 | 2274 |
| NP_817308.1 | NC_004678_p13 | tail protein | phrog_2248 | tail protein | tail | -1 | 8311 | 10074 |
| NP_817306.1 | NC_004678_p11 | hypothetical protein | phrog_5979 | unknown function | unknown function | -1 | 6473 | 7912 |
| NP_817304.1 | NC_004678_p9 | encapsidation protein | phrog_2150 | terminase | head and packaging | 1 | 2921 | 4057 |
| NP_817310.1 | NC_004678_p15 | amidase | phrog_635 | endolysin | lysis | -1 | 10204 | 10956 |
| NP_817301.1 | NC_004678_p6 | hypothetical protein | phrog_7529 | unknown function | unknown function | 1 | 1704 | 2114 |
| NP_817309.1 | NC_004678_p14 | holin | phrog_20374 | holin | lysis | -1 | 10179 | 10457 |
| NP_817316.1 | NC_004678_p21 | hypothetical protein | phrog_7102 | unknown function | unknown function | -1 | 16100 | 16501 |