Genomic map of Staphylococcus phage 44AHJD (44AHJD) (NC_004678)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_004678
Definition
Staphylococcus phage 44AHJD, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Rakietenvirinae; Rosenblumvirus.
DB of origin
REFSEQ
Length
16784
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
21
%GC
29.62
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_817299.1 NC_004678_p4 hypothetical protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 1107 1475
NP_817303.1 NC_004678_p8 hypothetical protein phrog_6099 unknown function unknown function 1 2280 2762
NP_817311.1 NC_004678_p16 minor structural protein phrog_287 minor tail protein tail -1 10968 12911
NP_817305.1 NC_004678_p10 DNA polymerase phrog_1907 DNA polymerase DNA, RNA and nucleotide metabolism 1 4091 6358
NP_817297.1 NC_004678_p2 hypothetical protein phrog_6274 unknown function unknown function 1 528 830
NP_817300.1 NC_004678_p5 hypothetical protein phrog_7019 unknown function unknown function 1 1525 1701
NP_817315.1 NC_004678_p20 hypothetical protein phrog_6289 unknown function unknown function -1 15904 16086
NP_817312.1 NC_004678_p17 lower collar protein phrog_3225 adaptor Ad4 connector -1 12925 13680
NP_817314.1 NC_004678_p19 major capsid protein phrog_2006 major head protein head and packaging -1 14671 15897
NP_817298.1 NC_004678_p3 hypothetical protein phrog_6346 unknown function unknown function 1 848 1084
NP_817307.1 NC_004678_p12 holin phrog_199 holin lysis -1 7887 8309
NP_817296.1 NC_004678_p1 hypothetical protein phrog_10178 unknown function unknown function 1 338 535
NP_817313.1 NC_004678_p18 upper collar protein phrog_2038 upper collar connector connector -1 13673 14422
NP_817302.1 NC_004678_p7 hypothetical protein phrog_8543 unknown function unknown function 1 2107 2274
NP_817308.1 NC_004678_p13 tail protein phrog_2248 tail protein tail -1 8311 10074
NP_817306.1 NC_004678_p11 hypothetical protein phrog_5979 unknown function unknown function -1 6473 7912
NP_817304.1 NC_004678_p9 encapsidation protein phrog_2150 terminase head and packaging 1 2921 4057
NP_817310.1 NC_004678_p15 amidase phrog_635 endolysin lysis -1 10204 10956
NP_817301.1 NC_004678_p6 hypothetical protein phrog_7529 unknown function unknown function 1 1704 2114
NP_817309.1 NC_004678_p14 holin phrog_20374 holin lysis -1 10179 10457
NP_817316.1 NC_004678_p21 hypothetical protein phrog_7102 unknown function unknown function -1 16100 16501