| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_004679 |
Definition |
Staphylococcus phage phiP68, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Rakietenvirinae; Rosenblumvirus; unclassified Rosenblumvirus. |
DB of origin |
REFSEQ |
Length |
18227 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
22 |
%GC |
29.32 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_817317.1 | NC_004679_p1 | hypothetical protein | phrog_10178 | unknown function | unknown function | 1 | 342 | 539 |
| NP_817327.1 | NC_004679_p11 | hypothetical protein | phrog_5979 | unknown function | unknown function | -1 | 6477 | 7916 |
| NP_817330.1 | NC_004679_p14 | minor tail protein | phrog_9604 | tail protein | tail | -1 | 10136 | 11581 |
| NP_817321.1 | NC_004679_p5 | hypothetical protein | phrog_7019 | unknown function | unknown function | 1 | 1529 | 1705 |
| NP_817329.1 | NC_004679_p13 | tail protein | phrog_2248 | tail protein | tail | -1 | 8315 | 10078 |
| NP_817331.1 | NC_004679_p15 | holin | phrog_20374 | holin | lysis | -1 | 11619 | 11897 |
| NP_817336.1 | NC_004679_p20 | major capsid protein | phrog_2006 | major head protein | head and packaging | -1 | 16111 | 17337 |
| NP_817337.1 | NC_004679_p21 | hypothetical protein | phrog_6289 | unknown function | unknown function | -1 | 17344 | 17526 |
| NP_817323.1 | NC_004679_p7 | hypothetical protein | phrog_8543 | unknown function | unknown function | 1 | 2111 | 2278 |
| NP_817324.1 | NC_004679_p8 | hypothetical protein | phrog_6099 | unknown function | unknown function | 1 | 2284 | 2766 |
| NP_817328.1 | NC_004679_p12 | holin | phrog_199 | holin | lysis | -1 | 7891 | 8313 |
| NP_817320.1 | NC_004679_p4 | hypothetical protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 1111 | 1479 |
| NP_817325.1 | NC_004679_p9 | encapsidation protein | phrog_2150 | terminase | head and packaging | 1 | 2925 | 4061 |
| NP_817326.1 | NC_004679_p10 | DNA polymerase | phrog_1907 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 4095 | 6362 |
| NP_817322.1 | NC_004679_p6 | hypothetical protein | phrog_7529 | unknown function | unknown function | 1 | 1708 | 2118 |
| NP_817334.1 | NC_004679_p18 | lower collar protein | phrog_3225 | adaptor Ad4 | connector | -1 | 14365 | 15120 |
| NP_817335.1 | NC_004679_p19 | upper collar protein | phrog_2038 | upper collar connector | connector | -1 | 15113 | 15862 |
| NP_817338.1 | NC_004679_p22 | hypothetical protein | phrog_7102 | unknown function | unknown function | -1 | 17540 | 17941 |
| NP_817333.1 | NC_004679_p17 | minor structural protein | phrog_287 | minor tail protein | tail | -1 | 12408 | 14351 |
| NP_817319.1 | NC_004679_p3 | hypothetical protein | phrog_6346 | unknown function | unknown function | 1 | 852 | 1088 |
| NP_817332.1 | NC_004679_p16 | amidase | phrog_635 | endolysin | lysis | -1 | 11644 | 12396 |
| NP_817318.1 | NC_004679_p2 | hypothetical protein | phrog_6274 | unknown function | unknown function | 1 | 532 | 834 |