| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_004680 |
Definition |
Mycobacterium phage Che8, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
59471 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
112 |
%GC |
61.3 |
Number of singletons |
4 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_817369.1 | NC_004680_p31 | protein of an unannotated phage | phrog_747 | unknown function | unknown function | 1 | 26452 | 26685 |
| NP_817385.1 | NC_004680_p47 | protein of an unannotated phage | phrog_1948 | unknown function | unknown function | -1 | 34349 | 34798 |
| NP_817435.1 | NC_004680_p97 | protein of an unannotated phage | phrog_35961 | unknown function | unknown function | 1 | 52534 | 52749 |
| NP_817434.1 | NC_004680_p96 | protein of an unannotated phage | phrog_1545 | unknown function | unknown function | 1 | 52400 | 52537 |
| NP_817436.1 | NC_004680_p98 | protein of an unannotated phage | phrog_2278 | unknown function | unknown function | 1 | 52840 | 53139 |
| NP_817396.1 | NC_004680_p58 | protein of an unannotated phage | phrog_1849 | unknown function | unknown function | 1 | 40131 | 40412 |
| NP_817432.1 | NC_004680_p94 | protein of an unannotated phage | phrog_722 | unknown function | unknown function | 1 | 51967 | 52191 |
| NP_817391.1 | NC_004680_p53 | protein of an unannotated phage | phrog_35596 | unknown function | unknown function | 1 | 37841 | 38122 |
| NP_817371.1 | NC_004680_p33 | protein of an unannotated phage | phrog_102 | endolysin | lysis | 1 | 27956 | 28957 |
| NP_817386.1 | NC_004680_p48 | protein of an unannotated phage | phrog_2838 | transcriptional repressor | transcription regulation | -1 | 35062 | 35754 |
| NP_817424.1 | NC_004680_p86 | protein of an unannotated phage | phrog_647 | unknown function | unknown function | 1 | 49873 | 50157 |
| NP_817348.1 | NC_004680_p10 | protein of an unannotated phage | phrog_813 | head-tail adaptor | connector | 1 | 7099 | 7503 |
| NP_817393.1 | NC_004680_p55 | protein of an unannotated phage | phrog_780 | unknown function | unknown function | 1 | 38307 | 38549 |
| NP_817392.1 | NC_004680_p54 | protein of an unannotated phage | phrog_1816 | unknown function | unknown function | 1 | 38119 | 38310 |
| NP_817450.1 | NC_004680_p112 | protein of an unannotated phage | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 58973 | 59299 |
| NP_817339.1 | NC_004680_p1 | protein of an unannotated phage | phrog_226 | minor tail protein | tail | 1 | 108 | 563 |
| NP_817400.1 | NC_004680_p62 | protein of an unannotated phage | phrog_1333 | unknown function | unknown function | 1 | 41667 | 42161 |
| NP_817426.1 | NC_004680_p88 | protein of an unannotated phage | phrog_5892 | unknown function | unknown function | 1 | 50515 | 50670 |
| NP_817389.1 | NC_004680_p51 | protein of an unannotated phage | phrog_2025 | unknown function | unknown function | 1 | 37302 | 37517 |
| NP_817441.1 | NC_004680_p103 | protein of an unannotated phage | phrog_1694 | unknown function | unknown function | 1 | 54897 | 55055 |
| NP_817417.1 | NC_004680_p79 | protein of an unannotated phage | phrog_4296 | unknown function | unknown function | 1 | 47586 | 47948 |
| NP_817431.1 | NC_004680_p93 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 51824 | 51970 |
| NP_817411.1 | NC_004680_p73 | protein of an unannotated phage | phrog_2704 | unknown function | unknown function | 1 | 45889 | 46035 |
| NP_817429.1 | NC_004680_p91 | protein of an unannotated phage | phrog_1901 | unknown function | unknown function | 1 | 51256 | 51447 |
| NP_817406.1 | NC_004680_p68 | protein of an unannotated phage | phrog_2060 | DNA methyltransferase | other | 1 | 43878 | 44219 |
| NP_817405.1 | NC_004680_p67 | protein of an unannotated phage | phrog_1834 | unknown function | unknown function | 1 | 43651 | 43881 |
| NP_817423.1 | NC_004680_p85 | protein of an unannotated phage | phrog_722 | unknown function | unknown function | 1 | 49487 | 49876 |
| NP_817419.1 | NC_004680_p81 | protein of an unannotated phage | phrog_7196 | unknown function | unknown function | 1 | 48149 | 48442 |
| NP_817403.1 | NC_004680_p65 | protein of an unannotated phage | phrog_1333 | unknown function | unknown function | 1 | 42852 | 43499 |
| NP_817363.1 | NC_004680_p25 | protein of an unannotated phage | phrog_754 | minor tail protein | tail | 1 | 24294 | 25256 |
| NP_817445.1 | NC_004680_p107 | protein of an unannotated phage | phrog_2057 | unknown function | unknown function | 1 | 55992 | 56153 |
| NP_817384.1 | NC_004680_p46 | protein of an unannotated phage | phrog_1 | integrase | integration and excision | 1 | 32977 | 34287 |
| NP_817421.1 | NC_004680_p83 | protein of an unannotated phage | phrog_1573 | DNA methyltransferase | other | 1 | 48983 | 49318 |
| NP_817425.1 | NC_004680_p87 | protein of an unannotated phage | phrog_2021 | unknown function | unknown function | 1 | 50150 | 50518 |
| NP_817410.1 | NC_004680_p72 | protein of an unannotated phage | phrog_6573 | unknown function | unknown function | 1 | 45785 | 45889 |
| NP_817358.1 | NC_004680_p20 | protein of an unannotated phage | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19961 | 21847 |
| NP_817360.1 | NC_004680_p22 | protein of an unannotated phage | phrog_240 | head protein | head and packaging | 1 | 23028 | 23369 |
| NP_817430.1 | NC_004680_p92 | protein of an unannotated phage | phrog_1573 | DNA methyltransferase | other | 1 | 51444 | 51827 |
| NP_817440.1 | NC_004680_p102 | protein of an unannotated phage | phrog_1869 | unknown function | unknown function | 1 | 54727 | 54891 |
| NP_817444.1 | NC_004680_p106 | protein of an unannotated phage | phrog_1385 | unknown function | unknown function | 1 | 55704 | 55970 |
| NP_817422.1 | NC_004680_p84 | protein of an unannotated phage | phrog_2740 | unknown function | unknown function | 1 | 49311 | 49490 |
| NP_817378.1 | NC_004680_p40 | protein of an unannotated phage | phrog_21631 | unknown function | unknown function | -1 | 31138 | 31407 |
| NP_817447.1 | NC_004680_p109 | protein of an unannotated phage | phrog_1721 | galactosyl transferase | moron, auxiliary metabolic gene and host takeover | 1 | 57342 | 58040 |
| NP_817428.1 | NC_004680_p90 | protein of an unannotated phage | phrog_6727 | unknown function | unknown function | 1 | 51074 | 51259 |
| NP_817359.1 | NC_004680_p21 | protein of an unannotated phage | phrog_2106 | minor tail protein | tail | 1 | 21844 | 23010 |
| NP_817439.1 | NC_004680_p101 | protein of an unannotated phage | phrog_2259 | Rnase H | DNA, RNA and nucleotide metabolism | 1 | 54030 | 54587 |
| NP_817415.1 | NC_004680_p77 | protein of an unannotated phage | phrog_5500 | unknown function | unknown function | 1 | 46469 | 46687 |
| NP_817370.1 | NC_004680_p32 | protein of an unannotated phage | phrog_700 | endolysin | lysis | 1 | 26682 | 27956 |
| NP_817404.1 | NC_004680_p66 | protein of an unannotated phage | phrog_2078 | unknown function | unknown function | 1 | 43499 | 43651 |
| NP_817353.1 | NC_004680_p15 | protein of an unannotated phage | phrog_106 | minor tail protein | tail | 1 | 13036 | 14745 |
| NP_817345.1 | NC_004680_p7 | protein of an unannotated phage | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5881 | 6450 |
| NP_817443.1 | NC_004680_p105 | protein of an unannotated phage | phrog_1186 | unknown function | unknown function | 1 | 55306 | 55707 |
| NP_817449.1 | NC_004680_p111 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 58693 | 58989 |
| NP_817438.1 | NC_004680_p100 | protein of an unannotated phage | phrog_1467 | unknown function | unknown function | 1 | 53401 | 54033 |
| NP_817399.1 | NC_004680_p61 | protein of an unannotated phage | phrog_658 | unknown function | unknown function | 1 | 41322 | 41666 |
| NP_817350.1 | NC_004680_p12 | protein of an unannotated phage | phrog_621 | tail assembly chaperone | tail | 1 | 8536 | 9087 |
| NP_817383.1 | NC_004680_p45 | protein of an unannotated phage | phrog_32039 | unknown function | unknown function | -1 | 32379 | 32597 |
| NP_817375.1 | NC_004680_p37 | protein of an unannotated phage | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29821 | 30642 |
| NP_817352.1 | NC_004680_p14 | protein of an unannotated phage | phrog_1942 | tail length tape measure protein | tail | 1 | 9469 | 13035 |
| NP_817401.1 | NC_004680_p63 | protein of an unannotated phage | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 42158 | 42505 |
| NP_817357.1 | NC_004680_p19 | protein of an unannotated phage | phrog_346 | minor tail protein | tail | 1 | 18453 | 19964 |
| NP_817418.1 | NC_004680_p80 | protein of an unannotated phage | phrog_2080 | unknown function | unknown function | 1 | 47941 | 48165 |
| NP_817412.1 | NC_004680_p74 | protein of an unannotated phage | phrog_2070 | unknown function | unknown function | 1 | 46032 | 46193 |
| NP_817342.1 | NC_004680_p4 | protein of an unannotated phage | phrog_1522 | head maturation protease | head and packaging | 1 | 3596 | 4351 |
| NP_817380.1 | NC_004680_p42 | protein of an unannotated phage | phrog_10332 | unknown function | unknown function | -1 | 31754 | 31948 |
| NP_817397.1 | NC_004680_p59 | protein of an unannotated phage | phrog_15773 | unknown function | unknown function | 1 | 40409 | 41215 |
| NP_817408.1 | NC_004680_p70 | protein of an unannotated phage | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 45094 | 45456 |
| NP_817448.1 | NC_004680_p110 | protein of an unannotated phage | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 58037 | 58672 |
| NP_817354.1 | NC_004680_p16 | protein of an unannotated phage | phrog_110 | minor tail protein | tail | 1 | 14833 | 16542 |
| NP_817351.1 | NC_004680_p13 | protein of an unannotated phage | phrog_15976 | tail assembly chaperone | tail | 1 | 8969 | 9472 |
| NP_817346.1 | NC_004680_p8 | protein of an unannotated phage | phrog_763 | head-tail adaptor | connector | 1 | 6447 | 6776 |
| NP_817347.1 | NC_004680_p9 | protein of an unannotated phage | phrog_1929 | head-tail connector protein | connector | 1 | 6783 | 7109 |
| NP_817373.1 | NC_004680_p35 | protein of an unannotated phage | phrog_404 | minor tail protein | tail | 1 | 29203 | 29577 |
| NP_817420.1 | NC_004680_p82 | protein of an unannotated phage | phrog_3032 | unknown function | unknown function | 1 | 48630 | 48986 |
| NP_817364.1 | NC_004680_p26 | protein of an unannotated phage | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25253 | 25432 |
| NP_817394.1 | NC_004680_p56 | protein of an unannotated phage | phrog_1797 | unknown function | unknown function | 1 | 38546 | 39160 |
| NP_817355.1 | NC_004680_p17 | protein of an unannotated phage | phrog_732 | minor tail protein | tail | 1 | 16584 | 17429 |
| NP_817381.1 | NC_004680_p43 | protein of an unannotated phage | phrog_5648 | unknown function | unknown function | -1 | 31950 | 32186 |
| NP_817374.1 | NC_004680_p36 | protein of an unannotated phage | phrog_2004 | unknown function | unknown function | 1 | 29574 | 29834 |
| NP_817361.1 | NC_004680_p23 | protein of an unannotated phage | phrog_2005 | minor tail protein | tail | 1 | 23388 | 23645 |
| NP_817416.1 | NC_004680_p78 | protein of an unannotated phage | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 46684 | 47589 |
| NP_817376.1 | NC_004680_p38 | protein of an unannotated phage | phrog_1791 | unknown function | unknown function | 1 | 30658 | 30948 |
| NP_817341.1 | NC_004680_p3 | protein of an unannotated phage | phrog_104 | portal protein | head and packaging | 1 | 2239 | 3609 |
| NP_817433.1 | NC_004680_p95 | protein of an unannotated phage | phrog_1091 | unknown function | unknown function | 1 | 52188 | 52400 |
| NP_817367.1 | NC_004680_p29 | protein of an unannotated phage | phrog_932 | unknown function | unknown function | 1 | 26100 | 26249 |
| NP_817390.1 | NC_004680_p52 | protein of an unannotated phage | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 37603 | 37800 |
| NP_817382.1 | NC_004680_p44 | protein of an unannotated phage | phrog_5497 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 32188 | 32382 |
| NP_817409.1 | NC_004680_p71 | protein of an unannotated phage | phrog_6938 | unknown function | unknown function | 1 | 45453 | 45788 |
| NP_817395.1 | NC_004680_p57 | protein of an unannotated phage | phrog_3416 | unknown function | unknown function | 1 | 39190 | 40053 |
| NP_817343.1 | NC_004680_p5 | protein of an unannotated phage | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4397 | 5032 |
| NP_817388.1 | NC_004680_p50 | protein of an unannotated phage | phrog_5253 | unknown function | unknown function | 1 | 37006 | 37305 |
| NP_817365.1 | NC_004680_p27 | protein of an unannotated phage | phrog_411 | unknown function | unknown function | 1 | 25601 | 25897 |
| NP_817446.1 | NC_004680_p108 | protein of an unannotated phage | phrog_8858 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 56170 | 57345 |
| NP_817402.1 | NC_004680_p64 | protein of an unannotated phage | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 42502 | 42855 |
| NP_817349.1 | NC_004680_p11 | protein of an unannotated phage | phrog_476 | major tail protein | tail | 1 | 7613 | 8422 |
| NP_817379.1 | NC_004680_p41 | protein of an unannotated phage | phrog_7977 | unknown function | unknown function | -1 | 31492 | 31761 |
| NP_817442.1 | NC_004680_p104 | protein of an unannotated phage | phrog_3813 | unknown function | unknown function | 1 | 55052 | 55309 |
| NP_817407.1 | NC_004680_p69 | protein of an unannotated phage | phrog_1366 | unknown function | unknown function | 1 | 44216 | 45097 |
| NP_817427.1 | NC_004680_p89 | protein of an unannotated phage | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 50716 | 51087 |
| NP_817366.1 | NC_004680_p28 | protein of an unannotated phage | phrog_9026 | unknown function | unknown function | 1 | 25894 | 26103 |
| NP_817372.1 | NC_004680_p34 | protein of an unannotated phage | phrog_443 | holin | lysis | 1 | 28973 | 29206 |
| NP_817344.1 | NC_004680_p6 | protein of an unannotated phage | phrog_267 | major head protein | head and packaging | 1 | 5051 | 5872 |
| NP_817340.1 | NC_004680_p2 | protein of an unannotated phage | phrog_9 | terminase large subunit | head and packaging | 1 | 571 | 2208 |
| NP_817398.1 | NC_004680_p60 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 41212 | 41319 |
| NP_817356.1 | NC_004680_p18 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 17426 | 18448 |
| NP_817377.1 | NC_004680_p39 | protein of an unannotated phage | phrog_1839 | unknown function | unknown function | 1 | 30938 | 31033 |
| NP_817387.1 | NC_004680_p49 | protein of an unannotated phage | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 36143 | 37009 |
| NP_817362.1 | NC_004680_p24 | protein of an unannotated phage | phrog_2012 | minor tail protein | tail | 1 | 23659 | 24297 |
| NP_817413.1 | NC_004680_p75 | protein of an unannotated phage | phrog_1311 | unknown function | unknown function | 1 | 46186 | 46350 |
| NP_817368.1 | NC_004680_p30 | protein of an unannotated phage | phrog_1172 | unknown function | unknown function | 1 | 26246 | 26386 |
| NP_817437.1 | NC_004680_p99 | protein of an unannotated phage | phrog_2247 | unknown function | unknown function | 1 | 53132 | 53404 |
| NP_817414.1 | NC_004680_p76 | protein of an unannotated phage | phrog_6193 | unknown function | unknown function | 1 | 46350 | 46472 |