| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_004681 |
Definition |
Mycobacterium phage Cjw1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus. |
DB of origin |
REFSEQ |
Length |
75931 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
141 |
%GC |
63.11 |
Number of singletons |
1 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_817585.1 | NC_004681_p135 | hypothetical protein | phrog_3174 | unknown function | unknown function | -1 | 73420 | 73803 |
| NP_817518.1 | NC_004681_p68 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 46229 | 46639 |
| NP_817453.1 | NC_004681_p3 | hypothetical protein | phrog_3858 | unknown function | unknown function | 1 | 748 | 1038 |
| NP_817486.1 | NC_004681_p36 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 33427 | 33888 |
| NP_817566.1 | NC_004681_p116 | hypothetical protein | phrog_2755 | unknown function | unknown function | 1 | 67676 | 67849 |
| NP_817541.1 | NC_004681_p91 | hypothetical protein | phrog_10857 | unknown function | unknown function | 1 | 55667 | 55939 |
| NP_817571.1 | NC_004681_p121 | hypothetical protein | phrog_2823 | unknown function | unknown function | 1 | 68847 | 69047 |
| NP_817476.1 | NC_004681_p26 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 23044 | 25440 |
| NP_817526.1 | NC_004681_p76 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 49273 | 49686 |
| NP_817529.1 | NC_004681_p79 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 50223 | 50873 |
| NP_817455.1 | NC_004681_p5 | hypothetical protein | phrog_83 | terminase small subunit | head and packaging | 1 | 1158 | 1619 |
| NP_817576.1 | NC_004681_p126 | hypothetical protein | phrog_2579 | ParB C-terminal domain | DNA, RNA and nucleotide metabolism | -1 | 70256 | 70645 |
| NP_817517.1 | NC_004681_p67 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 45264 | 46232 |
| NP_817487.1 | NC_004681_p37 | hypothetical protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 33895 | 34140 |
| NP_817553.1 | NC_004681_p103 | hypothetical protein | phrog_2785 | unknown function | unknown function | 1 | 62370 | 62795 |
| NP_817499.1 | NC_004681_p49 | hypothetical protein | phrog_2815 | unknown function | unknown function | -1 | 37404 | 37550 |
| NP_817522.1 | NC_004681_p72 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 48128 | 48496 |
| NP_817479.1 | NC_004681_p29 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 29310 | 29738 |
| NP_817540.1 | NC_004681_p90 | hypothetical protein | phrog_2844 | unknown function | unknown function | 1 | 55560 | 55670 |
| NP_817573.1 | NC_004681_p123 | hypothetical protein | phrog_2925 | unknown function | unknown function | 1 | 69178 | 69357 |
| NP_817464.1 | NC_004681_p14 | hypothetical protein | phrog_442 | head-tail adaptor | connector | 1 | 9903 | 10469 |
| NP_817569.1 | NC_004681_p119 | hypothetical protein | phrog_2174 | unknown function | unknown function | 1 | 68238 | 68699 |
| NP_817581.1 | NC_004681_p131 | hypothetical protein | phrog_4547 | unknown function | unknown function | -1 | 72190 | 72507 |
| NP_817549.1 | NC_004681_p99 | hypothetical protein | phrog_6025 | DNA methyltransferase | other | 1 | 59847 | 60410 |
| NP_817538.1 | NC_004681_p88 | 5'-hydroxyl kinase, a 3'-phosphatase and a 2',3'-cyclic phosphodiesterase | phrog_505 | polynucleotide kinase | other | 1 | 54158 | 55105 |
| NP_817527.1 | NC_004681_p77 | hypothetical protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 49683 | 50000 |
| NP_817498.1 | NC_004681_p48 | hypothetical protein | phrog_2702 | unknown function | unknown function | -1 | 37170 | 37385 |
| NP_817469.1 | NC_004681_p19 | hypothetical protein | phrog_5711 | head fiber protein | head and packaging | 1 | 12639 | 13112 |
| NP_817519.1 | NC_004681_p69 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 46632 | 47354 |
| NP_817564.1 | NC_004681_p114 | hypothetical protein | phrog_97 | UvsX-like recombinase | other | 1 | 66593 | 67555 |
| NP_817550.1 | NC_004681_p100 | hypothetical protein | phrog_3008 | DNA methyltransferase | other | 1 | 60418 | 61113 |
| NP_817475.1 | NC_004681_p25 | hypothetical protein | phrog_732 | minor tail protein | tail | 1 | 22206 | 23027 |
| NP_817503.1 | NC_004681_p53 | hypothetical protein | phrog_2842 | unknown function | unknown function | 1 | 39805 | 40044 |
| NP_817513.1 | NC_004681_p63 | hypothetical protein | phrog_2147 | unknown function | unknown function | 1 | 44027 | 44326 |
| NP_817509.1 | NC_004681_p59 | hypothetical protein | phrog_2463 | unknown function | unknown function | 1 | 42623 | 42769 |
| NP_817589.1 | NC_004681_p139 | hypothetical protein | phrog_34224 | unknown function | unknown function | -1 | 74422 | 74688 |
| NP_817523.1 | NC_004681_p73 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 48499 | 48867 |
| NP_817496.1 | NC_004681_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36649 | 36981 |
| NP_817560.1 | NC_004681_p110 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 64694 | 65068 |
| NP_817583.1 | NC_004681_p133 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 72628 | 72864 |
| NP_817590.1 | NC_004681_p140 | hypothetical protein | phrog_2904 | unknown function | unknown function | 1 | 74717 | 75064 |
| NP_817547.1 | NC_004681_p97 | hypothetical protein | phrog_2788 | unknown function | unknown function | 1 | 59018 | 59353 |
| NP_817545.1 | NC_004681_p95 | hypothetical protein | phrog_2853 | unknown function | unknown function | 1 | 58394 | 58552 |
| NP_817588.1 | NC_004681_p138 | hypothetical protein | phrog_2795 | unknown function | unknown function | -1 | 74220 | 74417 |
| NP_817485.1 | NC_004681_p35 | hypothetical protein | phrog_102 | endolysin | lysis | 1 | 32618 | 33475 |
| NP_817514.1 | NC_004681_p64 | hypothetical protein | phrog_2221 | unknown function | unknown function | 1 | 44259 | 44420 |
| NP_817457.1 | NC_004681_p7 | hypothetical protein | phrog_2202 | unknown function | unknown function | -1 | 1933 | 2232 |
| NP_817578.1 | NC_004681_p128 | hypothetical protein | phrog_3034 | unknown function | unknown function | -1 | 71021 | 71389 |
| NP_817582.1 | NC_004681_p132 | hypothetical protein | phrog_3730 | unknown function | unknown function | -1 | 72513 | 72623 |
| NP_817488.1 | NC_004681_p38 | hypothetical protein | phrog_9947 | Lsr2-like DNA bridging protein | DNA, RNA and nucleotide metabolism | -1 | 34377 | 34556 |
| NP_817557.1 | NC_004681_p107 | hypothetical protein | phrog_19288 | unknown function | unknown function | 1 | 63756 | 63869 |
| NP_817474.1 | NC_004681_p24 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 20668 | 22185 |
| NP_817575.1 | NC_004681_p125 | hypothetical protein | phrog_3016 | unknown function | unknown function | 1 | 69472 | 69633 |
| NP_817543.1 | NC_004681_p93 | hypothetical protein | phrog_1590 | unknown function | unknown function | 1 | 57316 | 58119 |
| NP_817471.1 | NC_004681_p21 | hypothetical protein | phrog_15493 | tail assembly chaperone | tail | 1 | 13637 | 14104 |
| NP_817510.1 | NC_004681_p60 | hypothetical protein | phrog_2800 | unknown function | unknown function | 1 | 42766 | 43044 |
| NP_817516.1 | NC_004681_p66 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 44938 | 45267 |
| NP_817528.1 | NC_004681_p78 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 49990 | 50226 |
| NP_817472.1 | NC_004681_p22 | hypothetical protein | phrog_2723 | tail length tape measure protein | tail | 1 | 14097 | 18827 |
| NP_817565.1 | NC_004681_p115 | hypothetical protein | phrog_2965 | unknown function | unknown function | 1 | 67552 | 67689 |
| NP_817460.1 | NC_004681_p10 | hypothetical protein | phrog_12 | portal protein | head and packaging | 1 | 5169 | 6725 |
| NP_817524.1 | NC_004681_p74 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 48867 | 49040 |
| NP_817556.1 | NC_004681_p106 | hypothetical protein | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 63455 | 63745 |
| NP_817512.1 | NC_004681_p62 | hypothetical protein | phrog_3463 | unknown function | unknown function | 1 | 43912 | 44019 |
| NP_817468.1 | NC_004681_p18 | hypothetical protein | phrog_476 | major tail protein | tail | 1 | 11605 | 12579 |
| NP_817506.1 | NC_004681_p56 | hypothetical protein | phrog_3071 | unknown function | unknown function | 1 | 41547 | 41645 |
| NP_817551.1 | NC_004681_p101 | hypothetical protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 61106 | 61546 |
| NP_817454.1 | NC_004681_p4 | hypothetical protein | phrog_8426 | unknown function | unknown function | 1 | 1028 | 1165 |
| NP_817561.1 | NC_004681_p111 | hypothetical protein | phrog_2252 | endolysin; inhibits RNA polymerase | lysis | 1 | 65071 | 65550 |
| NP_817473.1 | NC_004681_p23 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 18857 | 20518 |
| NP_817548.1 | NC_004681_p98 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 59386 | 59892 |
| NP_817507.1 | NC_004681_p57 | hypothetical protein | phrog_2852 | unknown function | unknown function | 1 | 41642 | 41779 |
| NP_817558.1 | NC_004681_p108 | hypothetical protein | phrog_2846 | unknown function | unknown function | 1 | 64127 | 64423 |
| NP_817574.1 | NC_004681_p124 | hypothetical protein | phrog_2897 | unknown function | unknown function | 1 | 69357 | 69488 |
| NP_817461.1 | NC_004681_p11 | hypothetical protein | phrog_2753 | head maturation protease | head and packaging | 1 | 6728 | 8020 |
| NP_817546.1 | NC_004681_p96 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 58549 | 59016 |
| NP_817481.1 | NC_004681_p31 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 30043 | 30327 |
| NP_817542.1 | NC_004681_p92 | hypothetical protein | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 55936 | 57261 |
| NP_817537.1 | NC_004681_p87 | hypothetical protein | phrog_2894 | unknown function | unknown function | 1 | 53809 | 54003 |
| NP_817456.1 | NC_004681_p6 | hypothetical protein | phrog_4101 | unknown function | unknown function | -1 | 1691 | 1933 |
| NP_817520.1 | NC_004681_p70 | hypothetical protein | phrog_2750 | unknown function | unknown function | 1 | 47347 | 47658 |
| NP_817530.1 | NC_004681_p80 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 50855 | 51202 |
| NP_817458.1 | NC_004681_p8 | hypothetical protein | phrog_9 | terminase large subunit | head and packaging | 1 | 2286 | 4949 |
| NP_817591.1 | NC_004681_p141 | hypothetical protein | phrog_2762 | unknown function | unknown function | 1 | 75139 | 75360 |
| NP_817462.1 | NC_004681_p12 | hypothetical protein | phrog_10 | major head protein | head and packaging | 1 | 8108 | 9601 |
| NP_817533.1 | NC_004681_p83 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 52558 | 52899 |
| NP_817459.1 | NC_004681_p9 | hypothetical protein | phrog_2845 | unknown function | unknown function | 1 | 4961 | 5182 |
| NP_817567.1 | NC_004681_p117 | hypothetical protein | phrog_2279 | unknown function | unknown function | 1 | 67842 | 68054 |
| NP_817467.1 | NC_004681_p17 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 11174 | 11578 |
| NP_817584.1 | NC_004681_p134 | hypothetical protein | phrog_2883 | unknown function | unknown function | -1 | 72880 | 73416 |
| NP_817535.1 | NC_004681_p85 | hypothetical protein | phrog_3836 | unknown function | unknown function | 1 | 53088 | 53453 |
| NP_817555.1 | NC_004681_p105 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 63091 | 63402 |
| NP_817484.1 | NC_004681_p34 | hypothetical protein | phrog_2424 | unknown function | unknown function | 1 | 32283 | 32621 |
| NP_817539.1 | NC_004681_p89 | hypothetical protein | phrog_2495 | unknown function | unknown function | 1 | 55207 | 55575 |
| NP_817568.1 | NC_004681_p118 | hypothetical protein | phrog_3062 | unknown function | unknown function | 1 | 68035 | 68289 |
| NP_817489.1 | NC_004681_p39 | hypothetical protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 34559 | 34945 |
| NP_817495.1 | NC_004681_p45 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 36479 | 36652 |
| NP_817579.1 | NC_004681_p129 | hypothetical protein | phrog_1915 | unknown function | unknown function | -1 | 71386 | 71844 |
| NP_817502.1 | NC_004681_p52 | hypothetical protein | phrog_1 | integrase | integration and excision | 1 | 38785 | 39666 |
| NP_817554.1 | NC_004681_p104 | hypothetical protein | phrog_2757 | unknown function | unknown function | 1 | 62796 | 63086 |
| NP_817451.1 | NC_004681_p1 | hypothetical protein | phrog_2829 | unknown function | unknown function | 1 | 276 | 569 |
| NP_817497.1 | NC_004681_p47 | hypothetical protein | phrog_2893 | unknown function | unknown function | -1 | 36941 | 37177 |
| NP_817477.1 | NC_004681_p27 | hypothetical protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 25437 | 28277 |
| NP_817478.1 | NC_004681_p28 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 28278 | 29240 |
| NP_817580.1 | NC_004681_p130 | hypothetical protein | phrog_1587 | unknown function | unknown function | -1 | 71859 | 72188 |
| NP_817532.1 | NC_004681_p82 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 52454 | 52642 |
| NP_817494.1 | NC_004681_p44 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 36078 | 36482 |
| NP_817492.1 | NC_004681_p42 | hypothetical protein | phrog_3472 | unknown function | unknown function | -1 | 35648 | 35902 |
| NP_817501.1 | NC_004681_p51 | hypothetical protein | phrog_2847 | unknown function | unknown function | -1 | 38232 | 38534 |
| NP_817572.1 | NC_004681_p122 | hypothetical protein | phrog_2296 | unknown function | unknown function | 1 | 69044 | 69181 |
| NP_817505.1 | NC_004681_p55 | hypothetical protein | phrog_2745 | transcriptional repressor | transcription regulation | -1 | 40890 | 41321 |
| NP_817531.1 | NC_004681_p81 | hypothetical protein | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 51195 | 52457 |
| NP_817521.1 | NC_004681_p71 | hypothetical protein | phrog_2771 | unknown function | unknown function | 1 | 47658 | 48128 |
| NP_817466.1 | NC_004681_p16 | hypothetical protein | phrog_2805 | minor tail protein | tail | 1 | 10816 | 11196 |
| NP_817452.1 | NC_004681_p2 | hypothetical protein | phrog_2775 | unknown function | unknown function | 1 | 566 | 751 |
| NP_817544.1 | NC_004681_p94 | hypothetical protein | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 58116 | 58376 |
| NP_817511.1 | NC_004681_p61 | hypothetical protein | phrog_2744 | unknown function | unknown function | 1 | 43588 | 43893 |
| NP_817482.1 | NC_004681_p32 | hypothetical protein | phrog_317 | endolysin | lysis | 1 | 30401 | 31903 |
| NP_817586.1 | NC_004681_p136 | hypothetical protein | phrog_1438 | unknown function | unknown function | -1 | 73808 | 73981 |
| NP_817470.1 | NC_004681_p20 | hypothetical protein | phrog_621 | tail assembly chaperone | tail | 1 | 13233 | 13694 |
| NP_817577.1 | NC_004681_p127 | hypothetical protein | phrog_2942 | unknown function | unknown function | -1 | 70764 | 71024 |
| NP_817563.1 | NC_004681_p113 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 66343 | 66585 |
| NP_817490.1 | NC_004681_p40 | hypothetical protein | phrog_3481 | unknown function | unknown function | -1 | 34993 | 35184 |
| NP_817587.1 | NC_004681_p137 | hypothetical protein | phrog_2772 | unknown function | unknown function | -1 | 73978 | 74223 |
| NP_817480.1 | NC_004681_p30 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 29725 | 29910 |
| NP_817536.1 | NC_004681_p86 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 53450 | 53812 |
| NP_817500.1 | NC_004681_p50 | hypothetical protein | phrog_2759 | unknown function | unknown function | -1 | 37550 | 37945 |
| NP_817515.1 | NC_004681_p65 | hypothetical protein | phrog_16636 | secreted protein | other | 1 | 44339 | 44941 |
| NP_817504.1 | NC_004681_p54 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 40022 | 40795 |
| NP_817463.1 | NC_004681_p13 | hypothetical protein | phrog_2796 | head-tail connector protein | connector | 1 | 9724 | 9903 |
| NP_817465.1 | NC_004681_p15 | hypothetical protein | phrog_1531 | head closure | connector | 1 | 10484 | 10819 |
| NP_817493.1 | NC_004681_p43 | hypothetical protein | phrog_5831 | unknown function | unknown function | -1 | 35899 | 36081 |
| NP_817534.1 | NC_004681_p84 | hypothetical protein | phrog_2747 | unknown function | unknown function | 1 | 52874 | 53095 |
| NP_817491.1 | NC_004681_p41 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 35187 | 35651 |
| NP_817570.1 | NC_004681_p120 | hypothetical protein | phrog_2764 | unknown function | unknown function | 1 | 68696 | 68863 |
| NP_817525.1 | NC_004681_p75 | hypothetical protein | phrog_2793 | unknown function | unknown function | 1 | 49043 | 49276 |
| NP_817562.1 | NC_004681_p112 | hypothetical protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 65561 | 66346 |
| NP_817508.1 | NC_004681_p58 | hypothetical protein | phrog_923 | unknown function | unknown function | 1 | 41776 | 42621 |
| NP_817483.1 | NC_004681_p33 | hypothetical protein | phrog_526 | holin | lysis | 1 | 31907 | 32290 |
| NP_817559.1 | NC_004681_p109 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 64420 | 64683 |
| NP_817552.1 | NC_004681_p102 | hypothetical protein | phrog_94 | head maturation protease | head and packaging | 1 | 61582 | 62442 |