Genomic map of Mycobacterium virus CJW1 (NC_004681)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_004681
Definition
Mycobacterium phage Cjw1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus.
DB of origin
REFSEQ
Length
75931
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
141
%GC
63.11
Number of singletons
1
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_817585.1 NC_004681_p135 hypothetical protein phrog_3174 unknown function unknown function -1 73420 73803
NP_817518.1 NC_004681_p68 hypothetical protein phrog_572 unknown function unknown function 1 46229 46639
NP_817453.1 NC_004681_p3 hypothetical protein phrog_3858 unknown function unknown function 1 748 1038
NP_817486.1 NC_004681_p36 hypothetical protein phrog_726 unknown function unknown function 1 33427 33888
NP_817566.1 NC_004681_p116 hypothetical protein phrog_2755 unknown function unknown function 1 67676 67849
NP_817541.1 NC_004681_p91 hypothetical protein phrog_10857 unknown function unknown function 1 55667 55939
NP_817571.1 NC_004681_p121 hypothetical protein phrog_2823 unknown function unknown function 1 68847 69047
NP_817476.1 NC_004681_p26 hypothetical protein phrog_346 minor tail protein tail 1 23044 25440
NP_817526.1 NC_004681_p76 hypothetical protein phrog_289 GTP-binding domain other 1 49273 49686
NP_817529.1 NC_004681_p79 hypothetical protein phrog_1882 unknown function unknown function 1 50223 50873
NP_817455.1 NC_004681_p5 hypothetical protein phrog_83 terminase small subunit head and packaging 1 1158 1619
NP_817576.1 NC_004681_p126 hypothetical protein phrog_2579 ParB C-terminal domain DNA, RNA and nucleotide metabolism -1 70256 70645
NP_817517.1 NC_004681_p67 hypothetical protein phrog_466 exonuclease DNA, RNA and nucleotide metabolism 1 45264 46232
NP_817487.1 NC_004681_p37 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 33895 34140
NP_817553.1 NC_004681_p103 hypothetical protein phrog_2785 unknown function unknown function 1 62370 62795
NP_817499.1 NC_004681_p49 hypothetical protein phrog_2815 unknown function unknown function -1 37404 37550
NP_817522.1 NC_004681_p72 hypothetical protein phrog_1389 unknown function unknown function 1 48128 48496
NP_817479.1 NC_004681_p29 hypothetical protein phrog_644 unknown function unknown function 1 29310 29738
NP_817540.1 NC_004681_p90 hypothetical protein phrog_2844 unknown function unknown function 1 55560 55670
NP_817573.1 NC_004681_p123 hypothetical protein phrog_2925 unknown function unknown function 1 69178 69357
NP_817464.1 NC_004681_p14 hypothetical protein phrog_442 head-tail adaptor connector 1 9903 10469
NP_817569.1 NC_004681_p119 hypothetical protein phrog_2174 unknown function unknown function 1 68238 68699
NP_817581.1 NC_004681_p131 hypothetical protein phrog_4547 unknown function unknown function -1 72190 72507
NP_817549.1 NC_004681_p99 hypothetical protein phrog_6025 DNA methyltransferase other 1 59847 60410
NP_817538.1 NC_004681_p88 5'-hydroxyl kinase, a 3'-phosphatase and a 2',3'-cyclic phosphodiesterase phrog_505 polynucleotide kinase other 1 54158 55105
NP_817527.1 NC_004681_p77 hypothetical protein phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 49683 50000
NP_817498.1 NC_004681_p48 hypothetical protein phrog_2702 unknown function unknown function -1 37170 37385
NP_817469.1 NC_004681_p19 hypothetical protein phrog_5711 head fiber protein head and packaging 1 12639 13112
NP_817519.1 NC_004681_p69 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 46632 47354
NP_817564.1 NC_004681_p114 hypothetical protein phrog_97 UvsX-like recombinase other 1 66593 67555
NP_817550.1 NC_004681_p100 hypothetical protein phrog_3008 DNA methyltransferase other 1 60418 61113
NP_817475.1 NC_004681_p25 hypothetical protein phrog_732 minor tail protein tail 1 22206 23027
NP_817503.1 NC_004681_p53 hypothetical protein phrog_2842 unknown function unknown function 1 39805 40044
NP_817513.1 NC_004681_p63 hypothetical protein phrog_2147 unknown function unknown function 1 44027 44326
NP_817509.1 NC_004681_p59 hypothetical protein phrog_2463 unknown function unknown function 1 42623 42769
NP_817589.1 NC_004681_p139 hypothetical protein phrog_34224 unknown function unknown function -1 74422 74688
NP_817523.1 NC_004681_p73 hypothetical protein phrog_572 unknown function unknown function 1 48499 48867
NP_817496.1 NC_004681_p46 hypothetical protein singleton unknown function unknown function -1 36649 36981
NP_817560.1 NC_004681_p110 hypothetical protein phrog_355 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism 1 64694 65068
NP_817583.1 NC_004681_p133 hypothetical protein phrog_2287 unknown function unknown function -1 72628 72864
NP_817590.1 NC_004681_p140 hypothetical protein phrog_2904 unknown function unknown function 1 74717 75064
NP_817547.1 NC_004681_p97 hypothetical protein phrog_2788 unknown function unknown function 1 59018 59353
NP_817545.1 NC_004681_p95 hypothetical protein phrog_2853 unknown function unknown function 1 58394 58552
NP_817588.1 NC_004681_p138 hypothetical protein phrog_2795 unknown function unknown function -1 74220 74417
NP_817485.1 NC_004681_p35 hypothetical protein phrog_102 endolysin lysis 1 32618 33475
NP_817514.1 NC_004681_p64 hypothetical protein phrog_2221 unknown function unknown function 1 44259 44420
NP_817457.1 NC_004681_p7 hypothetical protein phrog_2202 unknown function unknown function -1 1933 2232
NP_817578.1 NC_004681_p128 hypothetical protein phrog_3034 unknown function unknown function -1 71021 71389
NP_817582.1 NC_004681_p132 hypothetical protein phrog_3730 unknown function unknown function -1 72513 72623
NP_817488.1 NC_004681_p38 hypothetical protein phrog_9947 Lsr2-like DNA bridging protein DNA, RNA and nucleotide metabolism -1 34377 34556
NP_817557.1 NC_004681_p107 hypothetical protein phrog_19288 unknown function unknown function 1 63756 63869
NP_817474.1 NC_004681_p24 hypothetical protein phrog_110 minor tail protein tail 1 20668 22185
NP_817575.1 NC_004681_p125 hypothetical protein phrog_3016 unknown function unknown function 1 69472 69633
NP_817543.1 NC_004681_p93 hypothetical protein phrog_1590 unknown function unknown function 1 57316 58119
NP_817471.1 NC_004681_p21 hypothetical protein phrog_15493 tail assembly chaperone tail 1 13637 14104
NP_817510.1 NC_004681_p60 hypothetical protein phrog_2800 unknown function unknown function 1 42766 43044
NP_817516.1 NC_004681_p66 hypothetical protein phrog_762 unknown function unknown function 1 44938 45267
NP_817528.1 NC_004681_p78 hypothetical protein phrog_1673 unknown function unknown function 1 49990 50226
NP_817472.1 NC_004681_p22 hypothetical protein phrog_2723 tail length tape measure protein tail 1 14097 18827
NP_817565.1 NC_004681_p115 hypothetical protein phrog_2965 unknown function unknown function 1 67552 67689
NP_817460.1 NC_004681_p10 hypothetical protein phrog_12 portal protein head and packaging 1 5169 6725
NP_817524.1 NC_004681_p74 hypothetical protein phrog_1622 unknown function unknown function 1 48867 49040
NP_817556.1 NC_004681_p106 hypothetical protein phrog_959 HNH endonuclease DNA, RNA and nucleotide metabolism 1 63455 63745
NP_817512.1 NC_004681_p62 hypothetical protein phrog_3463 unknown function unknown function 1 43912 44019
NP_817468.1 NC_004681_p18 hypothetical protein phrog_476 major tail protein tail 1 11605 12579
NP_817506.1 NC_004681_p56 hypothetical protein phrog_3071 unknown function unknown function 1 41547 41645
NP_817551.1 NC_004681_p101 hypothetical protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 61106 61546
NP_817454.1 NC_004681_p4 hypothetical protein phrog_8426 unknown function unknown function 1 1028 1165
NP_817561.1 NC_004681_p111 hypothetical protein phrog_2252 endolysin; inhibits RNA polymerase lysis 1 65071 65550
NP_817473.1 NC_004681_p23 hypothetical protein phrog_106 minor tail protein tail 1 18857 20518
NP_817548.1 NC_004681_p98 hypothetical protein phrog_1568 DNA binding protein DNA, RNA and nucleotide metabolism 1 59386 59892
NP_817507.1 NC_004681_p57 hypothetical protein phrog_2852 unknown function unknown function 1 41642 41779
NP_817558.1 NC_004681_p108 hypothetical protein phrog_2846 unknown function unknown function 1 64127 64423
NP_817574.1 NC_004681_p124 hypothetical protein phrog_2897 unknown function unknown function 1 69357 69488
NP_817461.1 NC_004681_p11 hypothetical protein phrog_2753 head maturation protease head and packaging 1 6728 8020
NP_817546.1 NC_004681_p96 hypothetical protein phrog_889 unknown function unknown function 1 58549 59016
NP_817481.1 NC_004681_p31 hypothetical protein phrog_411 unknown function unknown function 1 30043 30327
NP_817542.1 NC_004681_p92 hypothetical protein phrog_968 RNA ligase DNA, RNA and nucleotide metabolism 1 55936 57261
NP_817537.1 NC_004681_p87 hypothetical protein phrog_2894 unknown function unknown function 1 53809 54003
NP_817456.1 NC_004681_p6 hypothetical protein phrog_4101 unknown function unknown function -1 1691 1933
NP_817520.1 NC_004681_p70 hypothetical protein phrog_2750 unknown function unknown function 1 47347 47658
NP_817530.1 NC_004681_p80 hypothetical protein phrog_572 unknown function unknown function 1 50855 51202
NP_817458.1 NC_004681_p8 hypothetical protein phrog_9 terminase large subunit head and packaging 1 2286 4949
NP_817591.1 NC_004681_p141 hypothetical protein phrog_2762 unknown function unknown function 1 75139 75360
NP_817462.1 NC_004681_p12 hypothetical protein phrog_10 major head protein head and packaging 1 8108 9601
NP_817533.1 NC_004681_p83 hypothetical protein phrog_1821 transcriptional regulator WhiB-like transcription regulation 1 52558 52899
NP_817459.1 NC_004681_p9 hypothetical protein phrog_2845 unknown function unknown function 1 4961 5182
NP_817567.1 NC_004681_p117 hypothetical protein phrog_2279 unknown function unknown function 1 67842 68054
NP_817467.1 NC_004681_p17 hypothetical protein phrog_813 head-tail adaptor connector 1 11174 11578
NP_817584.1 NC_004681_p134 hypothetical protein phrog_2883 unknown function unknown function -1 72880 73416
NP_817535.1 NC_004681_p85 hypothetical protein phrog_3836 unknown function unknown function 1 53088 53453
NP_817555.1 NC_004681_p105 hypothetical protein phrog_1969 unknown function unknown function 1 63091 63402
NP_817484.1 NC_004681_p34 hypothetical protein phrog_2424 unknown function unknown function 1 32283 32621
NP_817539.1 NC_004681_p89 hypothetical protein phrog_2495 unknown function unknown function 1 55207 55575
NP_817568.1 NC_004681_p118 hypothetical protein phrog_3062 unknown function unknown function 1 68035 68289
NP_817489.1 NC_004681_p39 hypothetical protein phrog_1223 nucloid associated Lsr2-like DNA, RNA and nucleotide metabolism -1 34559 34945
NP_817495.1 NC_004681_p45 hypothetical protein phrog_1155 unknown function unknown function -1 36479 36652
NP_817579.1 NC_004681_p129 hypothetical protein phrog_1915 unknown function unknown function -1 71386 71844
NP_817502.1 NC_004681_p52 hypothetical protein phrog_1 integrase integration and excision 1 38785 39666
NP_817554.1 NC_004681_p104 hypothetical protein phrog_2757 unknown function unknown function 1 62796 63086
NP_817451.1 NC_004681_p1 hypothetical protein phrog_2829 unknown function unknown function 1 276 569
NP_817497.1 NC_004681_p47 hypothetical protein phrog_2893 unknown function unknown function -1 36941 37177
NP_817477.1 NC_004681_p27 hypothetical protein phrog_382 minor tail protein with lysin activity tail 1 25437 28277
NP_817478.1 NC_004681_p28 hypothetical protein phrog_553 minor tail protein tail 1 28278 29240
NP_817580.1 NC_004681_p130 hypothetical protein phrog_1587 unknown function unknown function -1 71859 72188
NP_817532.1 NC_004681_p82 hypothetical protein phrog_1091 unknown function unknown function 1 52454 52642
NP_817494.1 NC_004681_p44 hypothetical protein phrog_722 unknown function unknown function -1 36078 36482
NP_817492.1 NC_004681_p42 hypothetical protein phrog_3472 unknown function unknown function -1 35648 35902
NP_817501.1 NC_004681_p51 hypothetical protein phrog_2847 unknown function unknown function -1 38232 38534
NP_817572.1 NC_004681_p122 hypothetical protein phrog_2296 unknown function unknown function 1 69044 69181
NP_817505.1 NC_004681_p55 hypothetical protein phrog_2745 transcriptional repressor transcription regulation -1 40890 41321
NP_817531.1 NC_004681_p81 hypothetical protein phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 51195 52457
NP_817521.1 NC_004681_p71 hypothetical protein phrog_2771 unknown function unknown function 1 47658 48128
NP_817466.1 NC_004681_p16 hypothetical protein phrog_2805 minor tail protein tail 1 10816 11196
NP_817452.1 NC_004681_p2 hypothetical protein phrog_2775 unknown function unknown function 1 566 751
NP_817544.1 NC_004681_p94 hypothetical protein phrog_472 WhiB transcriptional factor transcription regulation 1 58116 58376
NP_817511.1 NC_004681_p61 hypothetical protein phrog_2744 unknown function unknown function 1 43588 43893
NP_817482.1 NC_004681_p32 hypothetical protein phrog_317 endolysin lysis 1 30401 31903
NP_817586.1 NC_004681_p136 hypothetical protein phrog_1438 unknown function unknown function -1 73808 73981
NP_817470.1 NC_004681_p20 hypothetical protein phrog_621 tail assembly chaperone tail 1 13233 13694
NP_817577.1 NC_004681_p127 hypothetical protein phrog_2942 unknown function unknown function -1 70764 71024
NP_817563.1 NC_004681_p113 hypothetical protein phrog_1941 unknown function unknown function 1 66343 66585
NP_817490.1 NC_004681_p40 hypothetical protein phrog_3481 unknown function unknown function -1 34993 35184
NP_817587.1 NC_004681_p137 hypothetical protein phrog_2772 unknown function unknown function -1 73978 74223
NP_817480.1 NC_004681_p30 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 29725 29910
NP_817536.1 NC_004681_p86 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 53450 53812
NP_817500.1 NC_004681_p50 hypothetical protein phrog_2759 unknown function unknown function -1 37550 37945
NP_817515.1 NC_004681_p65 hypothetical protein phrog_16636 secreted protein other 1 44339 44941
NP_817504.1 NC_004681_p54 hypothetical protein phrog_950 unknown function unknown function -1 40022 40795
NP_817463.1 NC_004681_p13 hypothetical protein phrog_2796 head-tail connector protein connector 1 9724 9903
NP_817465.1 NC_004681_p15 hypothetical protein phrog_1531 head closure connector 1 10484 10819
NP_817493.1 NC_004681_p43 hypothetical protein phrog_5831 unknown function unknown function -1 35899 36081
NP_817534.1 NC_004681_p84 hypothetical protein phrog_2747 unknown function unknown function 1 52874 53095
NP_817491.1 NC_004681_p41 hypothetical protein phrog_647 unknown function unknown function -1 35187 35651
NP_817570.1 NC_004681_p120 hypothetical protein phrog_2764 unknown function unknown function 1 68696 68863
NP_817525.1 NC_004681_p75 hypothetical protein phrog_2793 unknown function unknown function 1 49043 49276
NP_817562.1 NC_004681_p112 hypothetical protein phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 65561 66346
NP_817508.1 NC_004681_p58 hypothetical protein phrog_923 unknown function unknown function 1 41776 42621
NP_817483.1 NC_004681_p33 hypothetical protein phrog_526 holin lysis 1 31907 32290
NP_817559.1 NC_004681_p109 hypothetical protein phrog_1042 unknown function unknown function 1 64420 64683
NP_817552.1 NC_004681_p102 hypothetical protein phrog_94 head maturation protease head and packaging 1 61582 62442