| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_004683 |
Definition |
Mycobacterium phage Che9c, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Chenonavirus. |
DB of origin |
REFSEQ |
Length |
57050 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
84 |
%GC |
65.37 |
Number of singletons |
8 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_817728.1 | NC_004683_p51 | protein of an unannotated phage | phrog_3507 | unknown function | unknown function | 1 | 40069 | 40380 |
| NP_817757.1 | NC_004683_p80 | protein of an unannotated phage | phrog_1186 | unknown function | unknown function | 1 | 53858 | 54301 |
| NP_817713.1 | NC_004683_p36 | protein of an unannotated phage | phrog_30407 | unknown function | unknown function | 1 | 28626 | 29954 |
| NP_817735.1 | NC_004683_p58 | protein of an unannotated phage | phrog_14059 | unknown function | unknown function | 1 | 42336 | 42560 |
| NP_817699.1 | NC_004683_p22 | protein of an unannotated phage | phrog_416 | minor tail protein | tail | 1 | 21007 | 22053 |
| NP_817712.1 | NC_004683_p35 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 28262 | 28597 |
| NP_817682.1 | NC_004683_p5 | protein of an unannotated phage | phrog_80 | head maturation protease | head and packaging | 1 | 3630 | 4610 |
| NP_817726.1 | NC_004683_p49 | protein of an unannotated phage | phrog_5253 | unknown function | unknown function | 1 | 39559 | 39882 |
| NP_817736.1 | NC_004683_p59 | protein of an unannotated phage | phrog_4702 | unknown function | unknown function | 1 | 42557 | 42709 |
| NP_817743.1 | NC_004683_p66 | protein of an unannotated phage | phrog_21063 | unknown function | unknown function | 1 | 47316 | 47558 |
| NP_817721.1 | NC_004683_p44 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 34271 | 34429 |
| NP_817722.1 | NC_004683_p45 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 34513 | 35835 |
| NP_817690.1 | NC_004683_p13 | protein of an unannotated phage | phrog_621 | tail assembly chaperone | tail | 1 | 9373 | 9867 |
| NP_817688.1 | NC_004683_p11 | protein of an unannotated phage | phrog_813 | head-tail adaptor | connector | 1 | 7971 | 8387 |
| NP_817687.1 | NC_004683_p10 | protein of an unannotated phage | phrog_2325 | minor tail protein | tail | 1 | 7526 | 7978 |
| NP_817755.1 | NC_004683_p78 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 53365 | 53550 |
| NP_817678.1 | NC_004683_p1 | protein of an unannotated phage | phrog_6975 | unknown function | unknown function | 1 | 58 | 516 |
| NP_817740.1 | NC_004683_p63 | protein of an unannotated phage | phrog_15611 | unknown function | unknown function | 1 | 45026 | 45364 |
| NP_817697.1 | NC_004683_p20 | protein of an unannotated phage | phrog_3493 | minor tail protein | tail | 1 | 18477 | 20729 |
| NP_817704.1 | NC_004683_p27 | protein of an unannotated phage | phrog_102 | endolysin | lysis | 1 | 24207 | 25421 |
| NP_817689.1 | NC_004683_p12 | protein of an unannotated phage | phrog_476 | major tail protein | tail | 1 | 8479 | 9276 |
| NP_817711.1 | NC_004683_p34 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 27970 | 28359 |
| NP_817729.1 | NC_004683_p52 | protein of an unannotated phage | phrog_20006 | unknown function | unknown function | 1 | 40377 | 40664 |
| NP_817709.1 | NC_004683_p32 | protein of an unannotated phage | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | -1 | 27074 | 27346 |
| NP_817759.1 | NC_004683_p82 | protein of an unannotated phage | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 54573 | 56009 |
| NP_817701.1 | NC_004683_p24 | protein of an unannotated phage | phrog_240 | head protein | head and packaging | 1 | 22654 | 23016 |
| NP_817703.1 | NC_004683_p26 | protein of an unannotated phage | phrog_1512 | endolysin | lysis | 1 | 23257 | 24210 |
| NP_817733.1 | NC_004683_p56 | protein of an unannotated phage | phrog_5803 | unknown function | unknown function | 1 | 41894 | 42172 |
| NP_817746.1 | NC_004683_p69 | protein of an unannotated phage | phrog_3193 | unknown function | unknown function | 1 | 48944 | 49369 |
| NP_817708.1 | NC_004683_p31 | protein of an unannotated phage | phrog_8245 | HicB-like antitoxin | moron, auxiliary metabolic gene and host takeover | -1 | 26694 | 27077 |
| NP_817705.1 | NC_004683_p28 | protein of an unannotated phage | phrog_6116 | holin | lysis | 1 | 25454 | 25657 |
| NP_817715.1 | NC_004683_p38 | protein of an unannotated phage | phrog_16514 | unknown function | unknown function | -1 | 30682 | 30954 |
| NP_817725.1 | NC_004683_p48 | protein of an unannotated phage | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 38675 | 39562 |
| NP_817751.1 | NC_004683_p74 | protein of an unannotated phage | phrog_7254 | unknown function | unknown function | 1 | 51889 | 52155 |
| NP_817718.1 | NC_004683_p41 | protein of an unannotated phage | phrog_1 | integrase | integration and excision | -1 | 32348 | 33550 |
| NP_817723.1 | NC_004683_p46 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 36989 | 38269 |
| NP_817747.1 | NC_004683_p70 | protein of an unannotated phage | phrog_14517 | unknown function | unknown function | 1 | 49481 | 50374 |
| NP_817744.1 | NC_004683_p67 | protein of an unannotated phage | phrog_27856 | unknown function | unknown function | 1 | 47555 | 47770 |
| NP_817734.1 | NC_004683_p57 | protein of an unannotated phage | phrog_5559 | unknown function | unknown function | 1 | 42169 | 42339 |
| NP_817742.1 | NC_004683_p65 | protein of an unannotated phage | phrog_116 | DNA methyltransferase | other | 1 | 45778 | 47319 |
| NP_817761.1 | NC_004683_p84 | protein of an unannotated phage | phrog_1808 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 56646 | 56942 |
| NP_817680.1 | NC_004683_p3 | protein of an unannotated phage | phrog_16366 | membrane associated protein | moron, auxiliary metabolic gene and host takeover | 1 | 2073 | 2261 |
| NP_817702.1 | NC_004683_p25 | protein of an unannotated phage | phrog_1172 | unknown function | unknown function | 1 | 23013 | 23189 |
| NP_817683.1 | NC_004683_p6 | protein of an unannotated phage | phrog_10 | major head protein | head and packaging | 1 | 4607 | 6238 |
| NP_817732.1 | NC_004683_p55 | protein of an unannotated phage | phrog_4981 | unknown function | unknown function | 1 | 41610 | 41897 |
| NP_817749.1 | NC_004683_p72 | protein of an unannotated phage | phrog_1408 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 50505 | 51371 |
| NP_817739.1 | NC_004683_p62 | protein of an unannotated phage | phrog_4387 | unknown function | unknown function | 1 | 44754 | 45029 |
| NP_817684.1 | NC_004683_p7 | protein of an unannotated phage | phrog_9538 | head-tail connector protein | connector | 1 | 6321 | 6605 |
| NP_817681.1 | NC_004683_p4 | protein of an unannotated phage | phrog_12 | portal protein | head and packaging | 1 | 2258 | 3658 |
| NP_817706.1 | NC_004683_p29 | protein of an unannotated phage | phrog_12678 | unknown function | unknown function | 1 | 25654 | 26139 |
| NP_817738.1 | NC_004683_p61 | protein of an unannotated phage | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 43643 | 44704 |
| NP_817686.1 | NC_004683_p9 | protein of an unannotated phage | phrog_1531 | head closure | connector | 1 | 7131 | 7526 |
| NP_817679.1 | NC_004683_p2 | protein of an unannotated phage | phrog_9 | terminase large subunit | head and packaging | 1 | 500 | 2047 |
| NP_817698.1 | NC_004683_p21 | protein of an unannotated phage | phrog_2235 | minor tail protein | tail | 1 | 20753 | 21007 |
| NP_817731.1 | NC_004683_p54 | protein of an unannotated phage | phrog_658 | unknown function | unknown function | 1 | 41194 | 41610 |
| NP_817748.1 | NC_004683_p71 | protein of an unannotated phage | phrog_2451 | unknown function | unknown function | 1 | 50371 | 50505 |
| NP_817695.1 | NC_004683_p18 | protein of an unannotated phage | phrog_20512 | minor tail protein | tail | 1 | 15832 | 17493 |
| NP_817758.1 | NC_004683_p81 | protein of an unannotated phage | phrog_24845 | unknown function | unknown function | 1 | 54298 | 54576 |
| NP_817714.1 | NC_004683_p37 | protein of an unannotated phage | phrog_31917 | unknown function | unknown function | 1 | 29951 | 30661 |
| NP_817685.1 | NC_004683_p8 | protein of an unannotated phage | phrog_442 | head-tail adaptor | connector | 1 | 6622 | 7134 |
| NP_817754.1 | NC_004683_p77 | protein of an unannotated phage | phrog_1869 | unknown function | unknown function | 1 | 53182 | 53361 |
| NP_817737.1 | NC_004683_p60 | protein of an unannotated phage | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 42706 | 43650 |
| NP_817724.1 | NC_004683_p47 | protein of an unannotated phage | phrog_6463 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 38394 | 38627 |
| NP_817741.1 | NC_004683_p64 | protein of an unannotated phage | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 45395 | 45778 |
| NP_817691.1 | NC_004683_p14 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 10103 | 10288 |
| NP_817716.1 | NC_004683_p39 | protein of an unannotated phage | phrog_30065 | unknown function | unknown function | -1 | 30932 | 31627 |
| NP_817700.1 | NC_004683_p23 | protein of an unannotated phage | phrog_2269 | unknown function | unknown function | 1 | 22077 | 22604 |
| NP_817694.1 | NC_004683_p17 | protein of an unannotated phage | phrog_6832 | unknown function | unknown function | 1 | 15668 | 15835 |
| NP_817752.1 | NC_004683_p75 | protein of an unannotated phage | phrog_908 | unknown function | unknown function | 1 | 52152 | 53057 |
| NP_817727.1 | NC_004683_p50 | protein of an unannotated phage | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 39879 | 40082 |
| NP_817696.1 | NC_004683_p19 | protein of an unannotated phage | phrog_732 | minor tail protein | tail | 1 | 17626 | 18480 |
| NP_817692.1 | NC_004683_p15 | protein of an unannotated phage | phrog_2337 | tail length tape measure protein | tail | 1 | 10303 | 13944 |
| NP_817760.1 | NC_004683_p83 | protein of an unannotated phage | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 56006 | 56632 |
| NP_817707.1 | NC_004683_p30 | protein of an unannotated phage | phrog_21046 | unknown function | unknown function | 1 | 26136 | 26534 |
| NP_817720.1 | NC_004683_p43 | protein of an unannotated phage | phrog_87 | metallo-protease | other | -1 | 33758 | 34201 |
| NP_817745.1 | NC_004683_p68 | protein of an unannotated phage | phrog_2045 | unknown function | unknown function | 1 | 47787 | 48947 |
| NP_817750.1 | NC_004683_p73 | protein of an unannotated phage | phrog_3599 | unknown function | unknown function | 1 | 51368 | 51892 |
| NP_817717.1 | NC_004683_p40 | protein of an unannotated phage | phrog_21924 | unknown function | unknown function | -1 | 31669 | 32067 |
| NP_817719.1 | NC_004683_p42 | protein of an unannotated phage | phrog_5316 | unknown function | unknown function | -1 | 33543 | 33770 |
| NP_817693.1 | NC_004683_p16 | protein of an unannotated phage | phrog_106 | minor tail protein | tail | 1 | 13941 | 15668 |
| NP_817710.1 | NC_004683_p33 | protein of an unannotated phage | phrog_87 | metallo-protease | other | 1 | 27464 | 27973 |
| NP_817730.1 | NC_004683_p53 | protein of an unannotated phage | phrog_5015 | unknown function | unknown function | 1 | 40661 | 41131 |
| NP_817756.1 | NC_004683_p79 | protein of an unannotated phage | phrog_6617 | unknown function | unknown function | 1 | 53547 | 53861 |
| NP_817753.1 | NC_004683_p76 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 53054 | 53191 |