Genomic map of Mycobacterium virus Che9c (NC_004683)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_004683
Definition
Mycobacterium phage Che9c, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Chenonavirus.
DB of origin
REFSEQ
Length
57050
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
84
%GC
65.37
Number of singletons
8
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_817728.1 NC_004683_p51 protein of an unannotated phage phrog_3507 unknown function unknown function 1 40069 40380
NP_817757.1 NC_004683_p80 protein of an unannotated phage phrog_1186 unknown function unknown function 1 53858 54301
NP_817713.1 NC_004683_p36 protein of an unannotated phage phrog_30407 unknown function unknown function 1 28626 29954
NP_817735.1 NC_004683_p58 protein of an unannotated phage phrog_14059 unknown function unknown function 1 42336 42560
NP_817699.1 NC_004683_p22 protein of an unannotated phage phrog_416 minor tail protein tail 1 21007 22053
NP_817712.1 NC_004683_p35 protein of an unannotated phage singleton unknown function unknown function 1 28262 28597
NP_817682.1 NC_004683_p5 protein of an unannotated phage phrog_80 head maturation protease head and packaging 1 3630 4610
NP_817726.1 NC_004683_p49 protein of an unannotated phage phrog_5253 unknown function unknown function 1 39559 39882
NP_817736.1 NC_004683_p59 protein of an unannotated phage phrog_4702 unknown function unknown function 1 42557 42709
NP_817743.1 NC_004683_p66 protein of an unannotated phage phrog_21063 unknown function unknown function 1 47316 47558
NP_817721.1 NC_004683_p44 protein of an unannotated phage singleton unknown function unknown function -1 34271 34429
NP_817722.1 NC_004683_p45 protein of an unannotated phage singleton unknown function unknown function -1 34513 35835
NP_817690.1 NC_004683_p13 protein of an unannotated phage phrog_621 tail assembly chaperone tail 1 9373 9867
NP_817688.1 NC_004683_p11 protein of an unannotated phage phrog_813 head-tail adaptor connector 1 7971 8387
NP_817687.1 NC_004683_p10 protein of an unannotated phage phrog_2325 minor tail protein tail 1 7526 7978
NP_817755.1 NC_004683_p78 protein of an unannotated phage singleton unknown function unknown function 1 53365 53550
NP_817678.1 NC_004683_p1 protein of an unannotated phage phrog_6975 unknown function unknown function 1 58 516
NP_817740.1 NC_004683_p63 protein of an unannotated phage phrog_15611 unknown function unknown function 1 45026 45364
NP_817697.1 NC_004683_p20 protein of an unannotated phage phrog_3493 minor tail protein tail 1 18477 20729
NP_817704.1 NC_004683_p27 protein of an unannotated phage phrog_102 endolysin lysis 1 24207 25421
NP_817689.1 NC_004683_p12 protein of an unannotated phage phrog_476 major tail protein tail 1 8479 9276
NP_817711.1 NC_004683_p34 protein of an unannotated phage singleton unknown function unknown function 1 27970 28359
NP_817729.1 NC_004683_p52 protein of an unannotated phage phrog_20006 unknown function unknown function 1 40377 40664
NP_817709.1 NC_004683_p32 protein of an unannotated phage phrog_353 toxin moron, auxiliary metabolic gene and host takeover -1 27074 27346
NP_817759.1 NC_004683_p82 protein of an unannotated phage phrog_1579 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 54573 56009
NP_817701.1 NC_004683_p24 protein of an unannotated phage phrog_240 head protein head and packaging 1 22654 23016
NP_817703.1 NC_004683_p26 protein of an unannotated phage phrog_1512 endolysin lysis 1 23257 24210
NP_817733.1 NC_004683_p56 protein of an unannotated phage phrog_5803 unknown function unknown function 1 41894 42172
NP_817746.1 NC_004683_p69 protein of an unannotated phage phrog_3193 unknown function unknown function 1 48944 49369
NP_817708.1 NC_004683_p31 protein of an unannotated phage phrog_8245 HicB-like antitoxin moron, auxiliary metabolic gene and host takeover -1 26694 27077
NP_817705.1 NC_004683_p28 protein of an unannotated phage phrog_6116 holin lysis 1 25454 25657
NP_817715.1 NC_004683_p38 protein of an unannotated phage phrog_16514 unknown function unknown function -1 30682 30954
NP_817725.1 NC_004683_p48 protein of an unannotated phage phrog_63 anti-repressor Ant transcription regulation 1 38675 39562
NP_817751.1 NC_004683_p74 protein of an unannotated phage phrog_7254 unknown function unknown function 1 51889 52155
NP_817718.1 NC_004683_p41 protein of an unannotated phage phrog_1 integrase integration and excision -1 32348 33550
NP_817723.1 NC_004683_p46 protein of an unannotated phage singleton unknown function unknown function -1 36989 38269
NP_817747.1 NC_004683_p70 protein of an unannotated phage phrog_14517 unknown function unknown function 1 49481 50374
NP_817744.1 NC_004683_p67 protein of an unannotated phage phrog_27856 unknown function unknown function 1 47555 47770
NP_817734.1 NC_004683_p57 protein of an unannotated phage phrog_5559 unknown function unknown function 1 42169 42339
NP_817742.1 NC_004683_p65 protein of an unannotated phage phrog_116 DNA methyltransferase other 1 45778 47319
NP_817761.1 NC_004683_p84 protein of an unannotated phage phrog_1808 HNH endonuclease DNA, RNA and nucleotide metabolism 1 56646 56942
NP_817680.1 NC_004683_p3 protein of an unannotated phage phrog_16366 membrane associated protein moron, auxiliary metabolic gene and host takeover 1 2073 2261
NP_817702.1 NC_004683_p25 protein of an unannotated phage phrog_1172 unknown function unknown function 1 23013 23189
NP_817683.1 NC_004683_p6 protein of an unannotated phage phrog_10 major head protein head and packaging 1 4607 6238
NP_817732.1 NC_004683_p55 protein of an unannotated phage phrog_4981 unknown function unknown function 1 41610 41897
NP_817749.1 NC_004683_p72 protein of an unannotated phage phrog_1408 replication initiation protein DNA, RNA and nucleotide metabolism 1 50505 51371
NP_817739.1 NC_004683_p62 protein of an unannotated phage phrog_4387 unknown function unknown function 1 44754 45029
NP_817684.1 NC_004683_p7 protein of an unannotated phage phrog_9538 head-tail connector protein connector 1 6321 6605
NP_817681.1 NC_004683_p4 protein of an unannotated phage phrog_12 portal protein head and packaging 1 2258 3658
NP_817706.1 NC_004683_p29 protein of an unannotated phage phrog_12678 unknown function unknown function 1 25654 26139
NP_817738.1 NC_004683_p61 protein of an unannotated phage phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 43643 44704
NP_817686.1 NC_004683_p9 protein of an unannotated phage phrog_1531 head closure connector 1 7131 7526
NP_817679.1 NC_004683_p2 protein of an unannotated phage phrog_9 terminase large subunit head and packaging 1 500 2047
NP_817698.1 NC_004683_p21 protein of an unannotated phage phrog_2235 minor tail protein tail 1 20753 21007
NP_817731.1 NC_004683_p54 protein of an unannotated phage phrog_658 unknown function unknown function 1 41194 41610
NP_817748.1 NC_004683_p71 protein of an unannotated phage phrog_2451 unknown function unknown function 1 50371 50505
NP_817695.1 NC_004683_p18 protein of an unannotated phage phrog_20512 minor tail protein tail 1 15832 17493
NP_817758.1 NC_004683_p81 protein of an unannotated phage phrog_24845 unknown function unknown function 1 54298 54576
NP_817714.1 NC_004683_p37 protein of an unannotated phage phrog_31917 unknown function unknown function 1 29951 30661
NP_817685.1 NC_004683_p8 protein of an unannotated phage phrog_442 head-tail adaptor connector 1 6622 7134
NP_817754.1 NC_004683_p77 protein of an unannotated phage phrog_1869 unknown function unknown function 1 53182 53361
NP_817737.1 NC_004683_p60 protein of an unannotated phage phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 42706 43650
NP_817724.1 NC_004683_p47 protein of an unannotated phage phrog_6463 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 38394 38627
NP_817741.1 NC_004683_p64 protein of an unannotated phage phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 45395 45778
NP_817691.1 NC_004683_p14 protein of an unannotated phage singleton unknown function unknown function 1 10103 10288
NP_817716.1 NC_004683_p39 protein of an unannotated phage phrog_30065 unknown function unknown function -1 30932 31627
NP_817700.1 NC_004683_p23 protein of an unannotated phage phrog_2269 unknown function unknown function 1 22077 22604
NP_817694.1 NC_004683_p17 protein of an unannotated phage phrog_6832 unknown function unknown function 1 15668 15835
NP_817752.1 NC_004683_p75 protein of an unannotated phage phrog_908 unknown function unknown function 1 52152 53057
NP_817727.1 NC_004683_p50 protein of an unannotated phage phrog_66 excisionase and transcriptional regulator integration and excision 1 39879 40082
NP_817696.1 NC_004683_p19 protein of an unannotated phage phrog_732 minor tail protein tail 1 17626 18480
NP_817692.1 NC_004683_p15 protein of an unannotated phage phrog_2337 tail length tape measure protein tail 1 10303 13944
NP_817760.1 NC_004683_p83 protein of an unannotated phage phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 56006 56632
NP_817707.1 NC_004683_p30 protein of an unannotated phage phrog_21046 unknown function unknown function 1 26136 26534
NP_817720.1 NC_004683_p43 protein of an unannotated phage phrog_87 metallo-protease other -1 33758 34201
NP_817745.1 NC_004683_p68 protein of an unannotated phage phrog_2045 unknown function unknown function 1 47787 48947
NP_817750.1 NC_004683_p73 protein of an unannotated phage phrog_3599 unknown function unknown function 1 51368 51892
NP_817717.1 NC_004683_p40 protein of an unannotated phage phrog_21924 unknown function unknown function -1 31669 32067
NP_817719.1 NC_004683_p42 protein of an unannotated phage phrog_5316 unknown function unknown function -1 33543 33770
NP_817693.1 NC_004683_p16 protein of an unannotated phage phrog_106 minor tail protein tail 1 13941 15668
NP_817710.1 NC_004683_p33 protein of an unannotated phage phrog_87 metallo-protease other 1 27464 27973
NP_817730.1 NC_004683_p53 protein of an unannotated phage phrog_5015 unknown function unknown function 1 40661 41131
NP_817756.1 NC_004683_p79 protein of an unannotated phage phrog_6617 unknown function unknown function 1 53547 53861
NP_817753.1 NC_004683_p76 protein of an unannotated phage singleton unknown function unknown function 1 53054 53191