| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_004684 |
Definition |
Mycobacterium phage Rosebush, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bclasvirinae; Rosebushvirus. |
DB of origin |
REFSEQ |
Length |
67480 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
90 |
%GC |
68.95 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_817805.1 | NC_004684_p44 | protein of an unannotated phage | phrog_955 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 39588 | 39977 |
| NP_817762.1 | NC_004684_p1 | protein of an unannotated phage | phrog_723 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 1 | 792 |
| NP_817820.1 | NC_004684_p59 | protein of an unannotated phage | phrog_3835 | unknown function | unknown function | -1 | 53496 | 53936 |
| NP_817776.1 | NC_004684_p15 | protein of an unannotated phage | phrog_777 | major head protein | head and packaging | 1 | 12528 | 14555 |
| NP_817834.1 | NC_004684_p73 | protein of an unannotated phage | phrog_7463 | unknown function | unknown function | -1 | 60155 | 60463 |
| NP_817814.1 | NC_004684_p53 | protein of an unannotated phage | phrog_1371 | unknown function | unknown function | -1 | 47278 | 47769 |
| NP_817782.1 | NC_004684_p21 | protein of an unannotated phage | phrog_792 | major tail protein | tail | 1 | 17693 | 18772 |
| NP_817786.1 | NC_004684_p25 | protein of an unannotated phage | phrog_810 | unknown function | unknown function | 1 | 20029 | 20589 |
| NP_817825.1 | NC_004684_p64 | protein of an unannotated phage | phrog_7544 | unknown function | unknown function | 1 | 55868 | 56209 |
| NP_817835.1 | NC_004684_p74 | protein of an unannotated phage | phrog_7367 | unknown function | unknown function | -1 | 60460 | 60771 |
| NP_817839.1 | NC_004684_p78 | protein of an unannotated phage | phrog_8500 | unknown function | unknown function | -1 | 61957 | 62118 |
| NP_817778.1 | NC_004684_p17 | protein of an unannotated phage | phrog_970 | unknown function | unknown function | 1 | 15467 | 16216 |
| NP_817766.1 | NC_004684_p5 | protein of an unannotated phage | phrog_2076 | QueE-like radical SAM domain | moron, auxiliary metabolic gene and host takeover | 1 | 3075 | 3788 |
| NP_817793.1 | NC_004684_p32 | protein of an unannotated phage | phrog_346 | minor tail protein | tail | 1 | 30088 | 32808 |
| NP_817846.1 | NC_004684_p85 | protein of an unannotated phage | phrog_7689 | unknown function | unknown function | -1 | 65303 | 65449 |
| NP_817821.1 | NC_004684_p60 | protein of an unannotated phage | phrog_982 | unknown function | unknown function | -1 | 54189 | 54491 |
| NP_817843.1 | NC_004684_p82 | protein of an unannotated phage | phrog_1010 | unknown function | unknown function | -1 | 63221 | 63817 |
| NP_817806.1 | NC_004684_p45 | protein of an unannotated phage | phrog_636 | unknown function | unknown function | -1 | 40052 | 40816 |
| NP_817791.1 | NC_004684_p30 | protein of an unannotated phage | phrog_838 | unknown function | unknown function | 1 | 27603 | 29039 |
| NP_817824.1 | NC_004684_p63 | protein of an unannotated phage | phrog_1016 | unknown function | unknown function | 1 | 55576 | 55836 |
| NP_817767.1 | NC_004684_p6 | protein of an unannotated phage | phrog_2197 | GTP cyclohydrolase | other | 1 | 3788 | 4363 |
| NP_817849.1 | NC_004684_p88 | protein of an unannotated phage | phrog_9162 | unknown function | unknown function | -1 | 65909 | 66271 |
| NP_817818.1 | NC_004684_p57 | protein of an unannotated phage | phrog_3025 | unknown function | unknown function | -1 | 52634 | 53017 |
| NP_817807.1 | NC_004684_p46 | protein of an unannotated phage | phrog_317 | endolysin | lysis | 1 | 40912 | 42423 |
| NP_817837.1 | NC_004684_p76 | protein of an unannotated phage | phrog_7525 | unknown function | unknown function | -1 | 61177 | 61494 |
| NP_817797.1 | NC_004684_p36 | protein of an unannotated phage | phrog_282 | unknown function | unknown function | 1 | 34804 | 35448 |
| NP_817770.1 | NC_004684_p9 | protein of an unannotated phage | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 6678 | 7166 |
| NP_817830.1 | NC_004684_p69 | protein of an unannotated phage | phrog_960 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 58760 | 59062 |
| NP_817789.1 | NC_004684_p28 | protein of an unannotated phage | phrog_6941 | unknown function | unknown function | 1 | 21435 | 21920 |
| NP_817794.1 | NC_004684_p33 | protein of an unannotated phage | phrog_416 | minor tail protein | tail | 1 | 32811 | 33974 |
| NP_817772.1 | NC_004684_p11 | protein of an unannotated phage | phrog_781 | unknown function | unknown function | 1 | 7480 | 7818 |
| NP_817815.1 | NC_004684_p54 | protein of an unannotated phage | phrog_906 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | -1 | 47834 | 50596 |
| NP_817774.1 | NC_004684_p13 | protein of an unannotated phage | phrog_859 | portal protein | head and packaging | 1 | 9734 | 12181 |
| NP_817784.1 | NC_004684_p23 | protein of an unannotated phage | phrog_1318 | unknown function | unknown function | -1 | 18945 | 19346 |
| NP_817768.1 | NC_004684_p7 | protein of an unannotated phage | phrog_38 | terminase large subunit | head and packaging | 1 | 4347 | 6041 |
| NP_817836.1 | NC_004684_p75 | protein of an unannotated phage | phrog_8341 | unknown function | unknown function | -1 | 60834 | 61079 |
| NP_817826.1 | NC_004684_p65 | protein of an unannotated phage | phrog_645 | Rnase E | DNA, RNA and nucleotide metabolism | 1 | 56206 | 56859 |
| NP_817845.1 | NC_004684_p84 | protein of an unannotated phage | phrog_2972 | unknown function | unknown function | -1 | 64973 | 65230 |
| NP_817811.1 | NC_004684_p50 | protein of an unannotated phage | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 44994 | 46709 |
| NP_817779.1 | NC_004684_p18 | protein of an unannotated phage | phrog_2272 | unknown function | unknown function | 1 | 16253 | 16795 |
| NP_817803.1 | NC_004684_p42 | protein of an unannotated phage | phrog_2804 | virion structural protein | head and packaging | 1 | 38659 | 39354 |
| NP_817840.1 | NC_004684_p79 | protein of an unannotated phage | phrog_1933 | unknown function | unknown function | -1 | 62120 | 62332 |
| NP_817795.1 | NC_004684_p34 | protein of an unannotated phage | phrog_240 | head protein | head and packaging | 1 | 34005 | 34394 |
| NP_817842.1 | NC_004684_p81 | protein of an unannotated phage | phrog_7394 | unknown function | unknown function | -1 | 62890 | 63111 |
| NP_817790.1 | NC_004684_p29 | protein of an unannotated phage | phrog_934 | tail length tape measure protein | tail | 1 | 21946 | 27594 |
| NP_817769.1 | NC_004684_p8 | protein of an unannotated phage | phrog_5935 | unknown function | unknown function | -1 | 6038 | 6508 |
| NP_817783.1 | NC_004684_p22 | protein of an unannotated phage | phrog_7051 | unknown function | unknown function | -1 | 18832 | 18945 |
| NP_817765.1 | NC_004684_p4 | protein of an unannotated phage | phrog_2389 | QueD-like 6-pyruvoyl-tetrahydropterin synthase | moron, auxiliary metabolic gene and host takeover | 1 | 2647 | 3078 |
| NP_817848.1 | NC_004684_p87 | protein of an unannotated phage | phrog_7256 | unknown function | unknown function | -1 | 65580 | 65912 |
| NP_817838.1 | NC_004684_p77 | protein of an unannotated phage | phrog_7479 | unknown function | unknown function | -1 | 61542 | 61967 |
| NP_817777.1 | NC_004684_p16 | protein of an unannotated phage | phrog_779 | unknown function | unknown function | 1 | 14649 | 15467 |
| NP_817813.1 | NC_004684_p52 | protein of an unannotated phage | phrog_3892 | unknown function | unknown function | -1 | 46943 | 47278 |
| NP_817833.1 | NC_004684_p72 | protein of an unannotated phage | phrog_8177 | unknown function | unknown function | -1 | 59880 | 60158 |
| NP_817801.1 | NC_004684_p40 | protein of an unannotated phage | phrog_941 | unknown function | unknown function | 1 | 37851 | 38216 |
| NP_817841.1 | NC_004684_p80 | protein of an unannotated phage | phrog_6719 | unknown function | unknown function | -1 | 62329 | 62823 |
| NP_817816.1 | NC_004684_p55 | protein of an unannotated phage | phrog_2526 | unknown function | unknown function | -1 | 50641 | 50805 |
| NP_817850.1 | NC_004684_p89 | protein of an unannotated phage | phrog_6718 | unknown function | unknown function | -1 | 66274 | 66465 |
| NP_817822.1 | NC_004684_p61 | protein of an unannotated phage | phrog_8754 | unknown function | unknown function | 1 | 54609 | 54878 |
| NP_817817.1 | NC_004684_p56 | protein of an unannotated phage | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 50808 | 52637 |
| NP_817785.1 | NC_004684_p24 | protein of an unannotated phage | phrog_783 | head-tail adaptor | connector | 1 | 19415 | 20032 |
| NP_817809.1 | NC_004684_p48 | protein of an unannotated phage | phrog_870 | unknown function | unknown function | -1 | 43076 | 43615 |
| NP_817808.1 | NC_004684_p47 | protein of an unannotated phage | phrog_526 | holin | lysis | 1 | 42423 | 42959 |
| NP_817829.1 | NC_004684_p68 | protein of an unannotated phage | phrog_928 | unknown function | unknown function | 1 | 57816 | 58529 |
| NP_817771.1 | NC_004684_p10 | protein of an unannotated phage | phrog_7710 | unknown function | unknown function | 1 | 7163 | 7483 |
| NP_817798.1 | NC_004684_p37 | protein of an unannotated phage | phrog_282 | unknown function | unknown function | 1 | 35594 | 36193 |
| NP_817804.1 | NC_004684_p43 | protein of an unannotated phage | phrog_597 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 39351 | 39530 |
| NP_817847.1 | NC_004684_p86 | protein of an unannotated phage | phrog_8227 | unknown function | unknown function | -1 | 65446 | 65583 |
| NP_817810.1 | NC_004684_p49 | protein of an unannotated phage | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43630 | 44997 |
| NP_817787.1 | NC_004684_p26 | protein of an unannotated phage | phrog_901 | unknown function | unknown function | 1 | 20598 | 20951 |
| NP_817764.1 | NC_004684_p3 | protein of an unannotated phage | phrog_1550 | QueC-like queuosine biosynthesis | moron, auxiliary metabolic gene and host takeover | 1 | 1943 | 2650 |
| NP_817832.1 | NC_004684_p71 | protein of an unannotated phage | phrog_7876 | unknown function | unknown function | -1 | 59371 | 59865 |
| NP_817799.1 | NC_004684_p38 | protein of an unannotated phage | phrog_3329 | unknown function | unknown function | 1 | 36190 | 37503 |
| NP_817819.1 | NC_004684_p58 | protein of an unannotated phage | phrog_993 | unknown function | unknown function | -1 | 53011 | 53499 |
| NP_817828.1 | NC_004684_p67 | protein of an unannotated phage | phrog_7186 | unknown function | unknown function | 1 | 57436 | 57819 |
| NP_817773.1 | NC_004684_p12 | protein of an unannotated phage | phrog_776 | portal protein | head and packaging | 1 | 7845 | 9734 |
| NP_817763.1 | NC_004684_p2 | protein of an unannotated phage | phrog_7068 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 789 | 1946 |
| NP_817812.1 | NC_004684_p51 | protein of an unannotated phage | phrog_7912 | unknown function | unknown function | -1 | 46780 | 46941 |
| NP_817800.1 | NC_004684_p39 | protein of an unannotated phage | phrog_915 | unknown function | unknown function | 1 | 37534 | 37890 |
| NP_817780.1 | NC_004684_p19 | protein of an unannotated phage | phrog_2344 | unknown function | unknown function | 1 | 16792 | 17274 |
| NP_817844.1 | NC_004684_p83 | protein of an unannotated phage | phrog_1221 | unknown function | unknown function | -1 | 63828 | 64898 |
| NP_817792.1 | NC_004684_p31 | protein of an unannotated phage | phrog_837 | minor tail protein | tail | 1 | 29042 | 30091 |
| NP_817796.1 | NC_004684_p35 | protein of an unannotated phage | phrog_948 | unknown function | unknown function | 1 | 34403 | 34792 |
| NP_817827.1 | NC_004684_p66 | protein of an unannotated phage | phrog_1031 | unknown function | unknown function | 1 | 56870 | 57394 |
| NP_817788.1 | NC_004684_p27 | protein of an unannotated phage | phrog_5 | tail completion or Neck1 protein | connector | 1 | 20951 | 21379 |
| NP_817831.1 | NC_004684_p70 | protein of an unannotated phage | phrog_2089 | unknown function | unknown function | -1 | 59150 | 59374 |
| NP_817775.1 | NC_004684_p14 | protein of an unannotated phage | phrog_2069 | unknown function | unknown function | 1 | 12181 | 12354 |
| NP_817781.1 | NC_004684_p20 | protein of an unannotated phage | phrog_2525 | unknown function | unknown function | 1 | 17271 | 17603 |
| NP_817823.1 | NC_004684_p62 | protein of an unannotated phage | phrog_996 | unknown function | unknown function | 1 | 54865 | 55566 |
| NP_817851.1 | NC_004684_p90 | protein of an unannotated phage | phrog_7435 | unknown function | unknown function | -1 | 66561 | 67316 |
| NP_817802.1 | NC_004684_p41 | protein of an unannotated phage | phrog_892 | tail fiber protein | tail | 1 | 38254 | 38658 |