Genomic map of Mycobacterium virus Che9d (NC_004686)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_004686
Definition
Mycobacterium phage Che9d, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus.
DB of origin
REFSEQ
Length
56276
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
111
%GC
60.9
Number of singletons
4
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_818064.1 NC_004686_p91 protein of an unannotated phage phrog_1573 DNA methyltransferase other 1 48601 49029
NP_818031.1 NC_004686_p58 protein of an unannotated phage phrog_1816 unknown function unknown function 1 36580 36768
NP_818001.1 NC_004686_p28 protein of an unannotated phage phrog_597 DNA binding protein DNA, RNA and nucleotide metabolism -1 23911 24090
NP_817974.1 NC_004686_p1 protein of an unannotated phage phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 48 380
NP_818063.1 NC_004686_p90 protein of an unannotated phage phrog_6816 unknown function unknown function 1 48356 48604
NP_818057.1 NC_004686_p84 protein of an unannotated phage phrog_5500 unknown function unknown function 1 46195 46413
NP_818020.1 NC_004686_p47 protein of an unannotated phage phrog_14625 unknown function unknown function -1 30887 30994
NP_818002.1 NC_004686_p29 protein of an unannotated phage phrog_411 unknown function unknown function 1 24226 24522
NP_818024.1 NC_004686_p51 protein of an unannotated phage phrog_24720 unknown function unknown function 1 33407 33694
NP_818072.1 NC_004686_p107 protein of an unannotated phage phrog_3813 unknown function unknown function 1 52933 53190
NP_818056.1 NC_004686_p83 protein of an unannotated phage phrog_6193 unknown function unknown function 1 46076 46198
NP_817989.1 NC_004686_p16 protein of an unannotated phage singleton unknown function unknown function 1 9092 9280
NP_817980.1 NC_004686_p7 protein of an unannotated phage phrog_10 major head protein head and packaging 1 4887 5822
NP_818061.1 NC_004686_p88 protein of an unannotated phage phrog_7196 unknown function unknown function 1 47842 48168
NP_818000.1 NC_004686_p27 protein of an unannotated phage phrog_644 unknown function unknown function 1 23483 23914
NP_817982.1 NC_004686_p9 protein of an unannotated phage phrog_1290 head-tail adaptor connector 1 5995 6450
NP_818051.1 NC_004686_p78 protein of an unannotated phage phrog_6938 unknown function unknown function 1 44615 44860
NP_817996.1 NC_004686_p23 protein of an unannotated phage phrog_18521 minor tail protein tail 1 16403 17104
NP_818006.1 NC_004686_p33 protein of an unannotated phage phrog_19498 unknown function unknown function 1 25015 25155
NP_818039.1 NC_004686_p66 protein of an unannotated phage phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 39242 39589
NP_818041.1 NC_004686_p68 protein of an unannotated phage phrog_1333 unknown function unknown function 1 39936 40583
NP_817993.1 NC_004686_p20 protein of an unannotated phage phrog_8122 minor tail protein tail 1 15416 15781
NP_818029.1 NC_004686_p56 protein of an unannotated phage phrog_66 excisionase and transcriptional regulator integration and excision 1 35970 36149
NP_817975.1 NC_004686_p2 protein of an unannotated phage phrog_4479 terminase small subunit head and packaging 1 447 701
NP_818047.1 NC_004686_p74 protein of an unannotated phage phrog_1366 unknown function unknown function 1 41891 42868
NP_818014.1 NC_004686_p41 protein of an unannotated phage phrog_7834 unknown function unknown function 1 29205 29618
NP_818028.1 NC_004686_p55 protein of an unannotated phage phrog_2025 unknown function unknown function 1 35666 35884
NP_817997.1 NC_004686_p24 protein of an unannotated phage phrog_346 minor tail protein tail 1 17101 19650
NP_818070.1 NC_004686_p105 protein of an unannotated phage phrog_1869 unknown function unknown function 1 52608 52772
NP_818034.1 NC_004686_p61 protein of an unannotated phage phrog_8015 unknown function unknown function 1 37582 37863
NP_818046.1 NC_004686_p73 protein of an unannotated phage phrog_5168 unknown function unknown function 1 41430 41894
NP_818067.1 NC_004686_p94 protein of an unannotated phage phrog_647 unknown function unknown function 1 49584 49877
NP_817979.1 NC_004686_p6 protein of an unannotated phage phrog_3760 head scaffolding protein head and packaging 1 4316 4864
NP_818025.1 NC_004686_p52 protein of an unannotated phage singleton unknown function unknown function 1 33716 33988
NP_817981.1 NC_004686_p8 protein of an unannotated phage phrog_14967 unknown function unknown function 1 5834 5977
NP_818037.1 NC_004686_p64 protein of an unannotated phage phrog_658 unknown function unknown function 1 38406 38750
NP_817998.1 NC_004686_p25 protein of an unannotated phage phrog_382 minor tail protein with lysin activity tail 1 19647 22472
NP_818016.1 NC_004686_p43 protein of an unannotated phage phrog_10332 unknown function unknown function -1 29868 30062
NP_818049.1 NC_004686_p76 protein of an unannotated phage phrog_67 DNA methyltransferase other 1 43218 43892
NP_818053.1 NC_004686_p80 protein of an unannotated phage phrog_363 DNA methyltransferase other 1 45003 45761
NP_818058.1 NC_004686_p85 protein of an unannotated phage phrog_2149 replication initiation protein DNA, RNA and nucleotide metabolism 1 46410 47315
NP_955478.1 NC_004686_p98 protein of an unannotated phage singleton unknown function unknown function 1 50513 50617
NP_818023.1 NC_004686_p50 protein of an unannotated phage phrog_1 integrase integration and excision -1 31560 32834
NP_955481.1 NC_004686_p101 protein of an unannotated phage phrog_2278 unknown function unknown function 1 50980 51273
NP_817977.1 NC_004686_p4 protein of an unannotated phage phrog_104 portal protein head and packaging 1 2190 3614
NP_818055.1 NC_004686_p82 protein of an unannotated phage phrog_1311 unknown function unknown function 1 45912 46076
NP_818030.1 NC_004686_p57 protein of an unannotated phage phrog_2021 unknown function unknown function 1 36146 36583
NP_818011.1 NC_004686_p38 protein of an unannotated phage phrog_4511 unknown function unknown function 1 28263 28562
NP_818012.1 NC_004686_p39 protein of an unannotated phage phrog_6071 unknown function unknown function 1 28562 28798
NP_818022.1 NC_004686_p49 protein of an unannotated phage phrog_32039 unknown function unknown function -1 31182 31400
NP_955477.1 NC_004686_p97 protein of an unannotated phage phrog_10718 unknown function unknown function 1 50271 50432
NP_818021.1 NC_004686_p48 protein of an unannotated phage phrog_5497 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 30991 31185
NP_818059.1 NC_004686_p86 protein of an unannotated phage phrog_4296 unknown function unknown function 1 47312 47674
NP_818043.1 NC_004686_p70 protein of an unannotated phage phrog_1834 unknown function unknown function 1 40735 40965
NP_818032.1 NC_004686_p59 protein of an unannotated phage singleton unknown function unknown function 1 36765 37010
NP_818071.1 NC_004686_p106 protein of an unannotated phage phrog_1694 unknown function unknown function 1 52778 52936
NP_818017.1 NC_004686_p44 protein of an unannotated phage phrog_28607 unknown function unknown function -1 30078 30377
NP_818007.1 NC_004686_p34 protein of an unannotated phage phrog_3888 unknown function unknown function 1 25160 25453
NP_817988.1 NC_004686_p15 protein of an unannotated phage phrog_16781 tail assembly chaperone tail 1 8307 8990
NP_818076.1 NC_004686_p111 protein of an unannotated phage phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 55564 56166
NP_817994.1 NC_004686_p21 protein of an unannotated phage phrog_17043 minor tail protein tail 1 15778 16101
NP_817990.1 NC_004686_p17 protein of an unannotated phage phrog_971 endolysin lysis 1 9273 12824
NP_955483.1 NC_004686_p103 protein of an unannotated phage phrog_2247 unknown function unknown function 1 51551 51802
NP_817999.1 NC_004686_p26 protein of an unannotated phage phrog_553 minor tail protein tail 1 22472 23416
NP_818065.1 NC_004686_p92 protein of an unannotated phage phrog_722 unknown function unknown function 1 49022 49441
NP_818073.1 NC_004686_p108 protein of an unannotated phage phrog_17545 unknown function unknown function -1 53187 53588
NP_818052.1 NC_004686_p79 protein of an unannotated phage phrog_2704 unknown function unknown function 1 44857 45006
NP_818033.1 NC_004686_p60 protein of an unannotated phage phrog_1797 unknown function unknown function 1 37007 37564
NP_817985.1 NC_004686_p12 protein of an unannotated phage phrog_387 neck protein connector 1 6957 7229
NP_818040.1 NC_004686_p67 protein of an unannotated phage phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 39586 39939
NP_818042.1 NC_004686_p69 protein of an unannotated phage phrog_2078 unknown function unknown function 1 40583 40735
NP_818035.1 NC_004686_p62 protein of an unannotated phage phrog_1849 unknown function unknown function 1 38027 38224
NP_818074.1 NC_004686_p109 protein of an unannotated phage phrog_8858 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 53691 54875
NP_817987.1 NC_004686_p14 protein of an unannotated phage phrog_117 major tail protein tail 1 7688 8281
NP_818026.1 NC_004686_p53 protein of an unannotated phage phrog_3 transcriptional repressor transcription regulation 1 34308 34610
NP_818069.1 NC_004686_p96 protein of an unannotated phage phrog_1901 unknown function unknown function 1 50083 50274
NP_818008.1 NC_004686_p35 protein of an unannotated phage phrog_700 endolysin lysis 1 25454 26818
NP_818005.1 NC_004686_p32 protein of an unannotated phage phrog_1172 unknown function unknown function 1 24809 24946
NP_818068.1 NC_004686_p95 protein of an unannotated phage phrog_2939 unknown function unknown function 1 49874 50086
NP_818044.1 NC_004686_p71 protein of an unannotated phage phrog_11976 unknown function unknown function 1 40962 41108
NP_955484.1 NC_004686_p104 protein of an unannotated phage phrog_1467 unknown function unknown function 1 51799 52458
NP_817983.1 NC_004686_p10 protein of an unannotated phage phrog_763 head-tail adaptor connector 1 6447 6800
NP_818066.1 NC_004686_p93 protein of an unannotated phage phrog_16849 unknown function unknown function 1 49438 49587
NP_818010.1 NC_004686_p37 protein of an unannotated phage phrog_443 holin lysis 1 28009 28266
NP_955480.1 NC_004686_p100 protein of an unannotated phage phrog_9881 unknown function unknown function 1 50754 50927
NP_818062.1 NC_004686_p89 protein of an unannotated phage phrog_1943 unknown function unknown function 1 48165 48359
NP_818075.1 NC_004686_p110 protein of an unannotated phage phrog_1721 galactosyl transferase moron, auxiliary metabolic gene and host takeover 1 54872 55567
NP_818003.1 NC_004686_p30 protein of an unannotated phage phrog_932 unknown function unknown function 1 24529 24675
NP_818013.1 NC_004686_p40 protein of an unannotated phage phrog_3798 unknown function unknown function 1 28798 29187
NP_818045.1 NC_004686_p72 protein of an unannotated phage phrog_2060 DNA methyltransferase other 1 41101 41433
NP_817992.1 NC_004686_p19 protein of an unannotated phage phrog_110 minor tail protein tail 1 13752 15416
NP_818038.1 NC_004686_p65 protein of an unannotated phage phrog_1333 unknown function unknown function 1 38751 39245
NP_818027.1 NC_004686_p54 protein of an unannotated phage phrog_130 anti-repressor Ant transcription regulation 1 34668 35669
NP_817986.1 NC_004686_p13 protein of an unannotated phage phrog_123 tail terminator connector 1 7222 7626
NP_818054.1 NC_004686_p81 protein of an unannotated phage phrog_2070 unknown function unknown function 1 45758 45919
NP_818019.1 NC_004686_p46 protein of an unannotated phage phrog_12593 unknown function unknown function -1 30660 30887
NP_818004.1 NC_004686_p31 protein of an unannotated phage phrog_13008 unknown function unknown function 1 24672 24812
NP_817976.1 NC_004686_p3 protein of an unannotated phage phrog_2 terminase large subunit head and packaging 1 673 2193
NP_817978.1 NC_004686_p5 protein of an unannotated phage phrog_193 head maturation protease head and packaging 1 3595 4239
NP_955479.1 NC_004686_p99 protein of an unannotated phage phrog_1545 unknown function unknown function 1 50614 50754
NP_818015.1 NC_004686_p42 protein of an unannotated phage phrog_10622 unknown function unknown function -1 29729 29875
NP_818036.1 NC_004686_p63 protein of an unannotated phage phrog_7605 unknown function unknown function 1 38221 38409
NP_955482.1 NC_004686_p102 protein of an unannotated phage phrog_10123 unknown function unknown function 1 51270 51548
NP_817984.1 NC_004686_p11 protein of an unannotated phage phrog_16796 unknown function unknown function 1 6797 6973
NP_817995.1 NC_004686_p22 protein of an unannotated phage phrog_17345 minor tail protein tail 1 16098 16406
NP_817991.1 NC_004686_p18 protein of an unannotated phage phrog_106 minor tail protein tail 1 12821 13750
NP_818009.1 NC_004686_p36 protein of an unannotated phage phrog_102 endolysin lysis 1 26815 27888
NP_818048.1 NC_004686_p75 protein of an unannotated phage phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 42865 43221
NP_818018.1 NC_004686_p45 protein of an unannotated phage phrog_5648 unknown function unknown function -1 30377 30613
NP_818050.1 NC_004686_p77 protein of an unannotated phage phrog_67 DNA methyltransferase other 1 43924 44577
NP_818060.1 NC_004686_p87 protein of an unannotated phage phrog_2080 unknown function unknown function 1 47667 47891