| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_004686 |
Definition |
Mycobacterium phage Che9d, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
56276 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
111 |
%GC |
60.9 |
Number of singletons |
4 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_818064.1 | NC_004686_p91 | protein of an unannotated phage | phrog_1573 | DNA methyltransferase | other | 1 | 48601 | 49029 |
| NP_818031.1 | NC_004686_p58 | protein of an unannotated phage | phrog_1816 | unknown function | unknown function | 1 | 36580 | 36768 |
| NP_818001.1 | NC_004686_p28 | protein of an unannotated phage | phrog_597 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 23911 | 24090 |
| NP_817974.1 | NC_004686_p1 | protein of an unannotated phage | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 48 | 380 |
| NP_818063.1 | NC_004686_p90 | protein of an unannotated phage | phrog_6816 | unknown function | unknown function | 1 | 48356 | 48604 |
| NP_818057.1 | NC_004686_p84 | protein of an unannotated phage | phrog_5500 | unknown function | unknown function | 1 | 46195 | 46413 |
| NP_818020.1 | NC_004686_p47 | protein of an unannotated phage | phrog_14625 | unknown function | unknown function | -1 | 30887 | 30994 |
| NP_818002.1 | NC_004686_p29 | protein of an unannotated phage | phrog_411 | unknown function | unknown function | 1 | 24226 | 24522 |
| NP_818024.1 | NC_004686_p51 | protein of an unannotated phage | phrog_24720 | unknown function | unknown function | 1 | 33407 | 33694 |
| NP_818072.1 | NC_004686_p107 | protein of an unannotated phage | phrog_3813 | unknown function | unknown function | 1 | 52933 | 53190 |
| NP_818056.1 | NC_004686_p83 | protein of an unannotated phage | phrog_6193 | unknown function | unknown function | 1 | 46076 | 46198 |
| NP_817989.1 | NC_004686_p16 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 9092 | 9280 |
| NP_817980.1 | NC_004686_p7 | protein of an unannotated phage | phrog_10 | major head protein | head and packaging | 1 | 4887 | 5822 |
| NP_818061.1 | NC_004686_p88 | protein of an unannotated phage | phrog_7196 | unknown function | unknown function | 1 | 47842 | 48168 |
| NP_818000.1 | NC_004686_p27 | protein of an unannotated phage | phrog_644 | unknown function | unknown function | 1 | 23483 | 23914 |
| NP_817982.1 | NC_004686_p9 | protein of an unannotated phage | phrog_1290 | head-tail adaptor | connector | 1 | 5995 | 6450 |
| NP_818051.1 | NC_004686_p78 | protein of an unannotated phage | phrog_6938 | unknown function | unknown function | 1 | 44615 | 44860 |
| NP_817996.1 | NC_004686_p23 | protein of an unannotated phage | phrog_18521 | minor tail protein | tail | 1 | 16403 | 17104 |
| NP_818006.1 | NC_004686_p33 | protein of an unannotated phage | phrog_19498 | unknown function | unknown function | 1 | 25015 | 25155 |
| NP_818039.1 | NC_004686_p66 | protein of an unannotated phage | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 39242 | 39589 |
| NP_818041.1 | NC_004686_p68 | protein of an unannotated phage | phrog_1333 | unknown function | unknown function | 1 | 39936 | 40583 |
| NP_817993.1 | NC_004686_p20 | protein of an unannotated phage | phrog_8122 | minor tail protein | tail | 1 | 15416 | 15781 |
| NP_818029.1 | NC_004686_p56 | protein of an unannotated phage | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 35970 | 36149 |
| NP_817975.1 | NC_004686_p2 | protein of an unannotated phage | phrog_4479 | terminase small subunit | head and packaging | 1 | 447 | 701 |
| NP_818047.1 | NC_004686_p74 | protein of an unannotated phage | phrog_1366 | unknown function | unknown function | 1 | 41891 | 42868 |
| NP_818014.1 | NC_004686_p41 | protein of an unannotated phage | phrog_7834 | unknown function | unknown function | 1 | 29205 | 29618 |
| NP_818028.1 | NC_004686_p55 | protein of an unannotated phage | phrog_2025 | unknown function | unknown function | 1 | 35666 | 35884 |
| NP_817997.1 | NC_004686_p24 | protein of an unannotated phage | phrog_346 | minor tail protein | tail | 1 | 17101 | 19650 |
| NP_818070.1 | NC_004686_p105 | protein of an unannotated phage | phrog_1869 | unknown function | unknown function | 1 | 52608 | 52772 |
| NP_818034.1 | NC_004686_p61 | protein of an unannotated phage | phrog_8015 | unknown function | unknown function | 1 | 37582 | 37863 |
| NP_818046.1 | NC_004686_p73 | protein of an unannotated phage | phrog_5168 | unknown function | unknown function | 1 | 41430 | 41894 |
| NP_818067.1 | NC_004686_p94 | protein of an unannotated phage | phrog_647 | unknown function | unknown function | 1 | 49584 | 49877 |
| NP_817979.1 | NC_004686_p6 | protein of an unannotated phage | phrog_3760 | head scaffolding protein | head and packaging | 1 | 4316 | 4864 |
| NP_818025.1 | NC_004686_p52 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 33716 | 33988 |
| NP_817981.1 | NC_004686_p8 | protein of an unannotated phage | phrog_14967 | unknown function | unknown function | 1 | 5834 | 5977 |
| NP_818037.1 | NC_004686_p64 | protein of an unannotated phage | phrog_658 | unknown function | unknown function | 1 | 38406 | 38750 |
| NP_817998.1 | NC_004686_p25 | protein of an unannotated phage | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19647 | 22472 |
| NP_818016.1 | NC_004686_p43 | protein of an unannotated phage | phrog_10332 | unknown function | unknown function | -1 | 29868 | 30062 |
| NP_818049.1 | NC_004686_p76 | protein of an unannotated phage | phrog_67 | DNA methyltransferase | other | 1 | 43218 | 43892 |
| NP_818053.1 | NC_004686_p80 | protein of an unannotated phage | phrog_363 | DNA methyltransferase | other | 1 | 45003 | 45761 |
| NP_818058.1 | NC_004686_p85 | protein of an unannotated phage | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 46410 | 47315 |
| NP_955478.1 | NC_004686_p98 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 50513 | 50617 |
| NP_818023.1 | NC_004686_p50 | protein of an unannotated phage | phrog_1 | integrase | integration and excision | -1 | 31560 | 32834 |
| NP_955481.1 | NC_004686_p101 | protein of an unannotated phage | phrog_2278 | unknown function | unknown function | 1 | 50980 | 51273 |
| NP_817977.1 | NC_004686_p4 | protein of an unannotated phage | phrog_104 | portal protein | head and packaging | 1 | 2190 | 3614 |
| NP_818055.1 | NC_004686_p82 | protein of an unannotated phage | phrog_1311 | unknown function | unknown function | 1 | 45912 | 46076 |
| NP_818030.1 | NC_004686_p57 | protein of an unannotated phage | phrog_2021 | unknown function | unknown function | 1 | 36146 | 36583 |
| NP_818011.1 | NC_004686_p38 | protein of an unannotated phage | phrog_4511 | unknown function | unknown function | 1 | 28263 | 28562 |
| NP_818012.1 | NC_004686_p39 | protein of an unannotated phage | phrog_6071 | unknown function | unknown function | 1 | 28562 | 28798 |
| NP_818022.1 | NC_004686_p49 | protein of an unannotated phage | phrog_32039 | unknown function | unknown function | -1 | 31182 | 31400 |
| NP_955477.1 | NC_004686_p97 | protein of an unannotated phage | phrog_10718 | unknown function | unknown function | 1 | 50271 | 50432 |
| NP_818021.1 | NC_004686_p48 | protein of an unannotated phage | phrog_5497 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30991 | 31185 |
| NP_818059.1 | NC_004686_p86 | protein of an unannotated phage | phrog_4296 | unknown function | unknown function | 1 | 47312 | 47674 |
| NP_818043.1 | NC_004686_p70 | protein of an unannotated phage | phrog_1834 | unknown function | unknown function | 1 | 40735 | 40965 |
| NP_818032.1 | NC_004686_p59 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 36765 | 37010 |
| NP_818071.1 | NC_004686_p106 | protein of an unannotated phage | phrog_1694 | unknown function | unknown function | 1 | 52778 | 52936 |
| NP_818017.1 | NC_004686_p44 | protein of an unannotated phage | phrog_28607 | unknown function | unknown function | -1 | 30078 | 30377 |
| NP_818007.1 | NC_004686_p34 | protein of an unannotated phage | phrog_3888 | unknown function | unknown function | 1 | 25160 | 25453 |
| NP_817988.1 | NC_004686_p15 | protein of an unannotated phage | phrog_16781 | tail assembly chaperone | tail | 1 | 8307 | 8990 |
| NP_818076.1 | NC_004686_p111 | protein of an unannotated phage | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 55564 | 56166 |
| NP_817994.1 | NC_004686_p21 | protein of an unannotated phage | phrog_17043 | minor tail protein | tail | 1 | 15778 | 16101 |
| NP_817990.1 | NC_004686_p17 | protein of an unannotated phage | phrog_971 | endolysin | lysis | 1 | 9273 | 12824 |
| NP_955483.1 | NC_004686_p103 | protein of an unannotated phage | phrog_2247 | unknown function | unknown function | 1 | 51551 | 51802 |
| NP_817999.1 | NC_004686_p26 | protein of an unannotated phage | phrog_553 | minor tail protein | tail | 1 | 22472 | 23416 |
| NP_818065.1 | NC_004686_p92 | protein of an unannotated phage | phrog_722 | unknown function | unknown function | 1 | 49022 | 49441 |
| NP_818073.1 | NC_004686_p108 | protein of an unannotated phage | phrog_17545 | unknown function | unknown function | -1 | 53187 | 53588 |
| NP_818052.1 | NC_004686_p79 | protein of an unannotated phage | phrog_2704 | unknown function | unknown function | 1 | 44857 | 45006 |
| NP_818033.1 | NC_004686_p60 | protein of an unannotated phage | phrog_1797 | unknown function | unknown function | 1 | 37007 | 37564 |
| NP_817985.1 | NC_004686_p12 | protein of an unannotated phage | phrog_387 | neck protein | connector | 1 | 6957 | 7229 |
| NP_818040.1 | NC_004686_p67 | protein of an unannotated phage | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 39586 | 39939 |
| NP_818042.1 | NC_004686_p69 | protein of an unannotated phage | phrog_2078 | unknown function | unknown function | 1 | 40583 | 40735 |
| NP_818035.1 | NC_004686_p62 | protein of an unannotated phage | phrog_1849 | unknown function | unknown function | 1 | 38027 | 38224 |
| NP_818074.1 | NC_004686_p109 | protein of an unannotated phage | phrog_8858 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 53691 | 54875 |
| NP_817987.1 | NC_004686_p14 | protein of an unannotated phage | phrog_117 | major tail protein | tail | 1 | 7688 | 8281 |
| NP_818026.1 | NC_004686_p53 | protein of an unannotated phage | phrog_3 | transcriptional repressor | transcription regulation | 1 | 34308 | 34610 |
| NP_818069.1 | NC_004686_p96 | protein of an unannotated phage | phrog_1901 | unknown function | unknown function | 1 | 50083 | 50274 |
| NP_818008.1 | NC_004686_p35 | protein of an unannotated phage | phrog_700 | endolysin | lysis | 1 | 25454 | 26818 |
| NP_818005.1 | NC_004686_p32 | protein of an unannotated phage | phrog_1172 | unknown function | unknown function | 1 | 24809 | 24946 |
| NP_818068.1 | NC_004686_p95 | protein of an unannotated phage | phrog_2939 | unknown function | unknown function | 1 | 49874 | 50086 |
| NP_818044.1 | NC_004686_p71 | protein of an unannotated phage | phrog_11976 | unknown function | unknown function | 1 | 40962 | 41108 |
| NP_955484.1 | NC_004686_p104 | protein of an unannotated phage | phrog_1467 | unknown function | unknown function | 1 | 51799 | 52458 |
| NP_817983.1 | NC_004686_p10 | protein of an unannotated phage | phrog_763 | head-tail adaptor | connector | 1 | 6447 | 6800 |
| NP_818066.1 | NC_004686_p93 | protein of an unannotated phage | phrog_16849 | unknown function | unknown function | 1 | 49438 | 49587 |
| NP_818010.1 | NC_004686_p37 | protein of an unannotated phage | phrog_443 | holin | lysis | 1 | 28009 | 28266 |
| NP_955480.1 | NC_004686_p100 | protein of an unannotated phage | phrog_9881 | unknown function | unknown function | 1 | 50754 | 50927 |
| NP_818062.1 | NC_004686_p89 | protein of an unannotated phage | phrog_1943 | unknown function | unknown function | 1 | 48165 | 48359 |
| NP_818075.1 | NC_004686_p110 | protein of an unannotated phage | phrog_1721 | galactosyl transferase | moron, auxiliary metabolic gene and host takeover | 1 | 54872 | 55567 |
| NP_818003.1 | NC_004686_p30 | protein of an unannotated phage | phrog_932 | unknown function | unknown function | 1 | 24529 | 24675 |
| NP_818013.1 | NC_004686_p40 | protein of an unannotated phage | phrog_3798 | unknown function | unknown function | 1 | 28798 | 29187 |
| NP_818045.1 | NC_004686_p72 | protein of an unannotated phage | phrog_2060 | DNA methyltransferase | other | 1 | 41101 | 41433 |
| NP_817992.1 | NC_004686_p19 | protein of an unannotated phage | phrog_110 | minor tail protein | tail | 1 | 13752 | 15416 |
| NP_818038.1 | NC_004686_p65 | protein of an unannotated phage | phrog_1333 | unknown function | unknown function | 1 | 38751 | 39245 |
| NP_818027.1 | NC_004686_p54 | protein of an unannotated phage | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 34668 | 35669 |
| NP_817986.1 | NC_004686_p13 | protein of an unannotated phage | phrog_123 | tail terminator | connector | 1 | 7222 | 7626 |
| NP_818054.1 | NC_004686_p81 | protein of an unannotated phage | phrog_2070 | unknown function | unknown function | 1 | 45758 | 45919 |
| NP_818019.1 | NC_004686_p46 | protein of an unannotated phage | phrog_12593 | unknown function | unknown function | -1 | 30660 | 30887 |
| NP_818004.1 | NC_004686_p31 | protein of an unannotated phage | phrog_13008 | unknown function | unknown function | 1 | 24672 | 24812 |
| NP_817976.1 | NC_004686_p3 | protein of an unannotated phage | phrog_2 | terminase large subunit | head and packaging | 1 | 673 | 2193 |
| NP_817978.1 | NC_004686_p5 | protein of an unannotated phage | phrog_193 | head maturation protease | head and packaging | 1 | 3595 | 4239 |
| NP_955479.1 | NC_004686_p99 | protein of an unannotated phage | phrog_1545 | unknown function | unknown function | 1 | 50614 | 50754 |
| NP_818015.1 | NC_004686_p42 | protein of an unannotated phage | phrog_10622 | unknown function | unknown function | -1 | 29729 | 29875 |
| NP_818036.1 | NC_004686_p63 | protein of an unannotated phage | phrog_7605 | unknown function | unknown function | 1 | 38221 | 38409 |
| NP_955482.1 | NC_004686_p102 | protein of an unannotated phage | phrog_10123 | unknown function | unknown function | 1 | 51270 | 51548 |
| NP_817984.1 | NC_004686_p11 | protein of an unannotated phage | phrog_16796 | unknown function | unknown function | 1 | 6797 | 6973 |
| NP_817995.1 | NC_004686_p22 | protein of an unannotated phage | phrog_17345 | minor tail protein | tail | 1 | 16098 | 16406 |
| NP_817991.1 | NC_004686_p18 | protein of an unannotated phage | phrog_106 | minor tail protein | tail | 1 | 12821 | 13750 |
| NP_818009.1 | NC_004686_p36 | protein of an unannotated phage | phrog_102 | endolysin | lysis | 1 | 26815 | 27888 |
| NP_818048.1 | NC_004686_p75 | protein of an unannotated phage | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 42865 | 43221 |
| NP_818018.1 | NC_004686_p45 | protein of an unannotated phage | phrog_5648 | unknown function | unknown function | -1 | 30377 | 30613 |
| NP_818050.1 | NC_004686_p77 | protein of an unannotated phage | phrog_67 | DNA methyltransferase | other | 1 | 43924 | 44577 |
| NP_818060.1 | NC_004686_p87 | protein of an unannotated phage | phrog_2080 | unknown function | unknown function | 1 | 47667 | 47891 |