Genomic map of Yersinia phage L-413C (NC_004745)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_004745
Definition
Yersinia phage L-413C, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Peduovirinae; Peduovirus.
DB of origin
REFSEQ
Length
30728
Host Name
Yersinia pestis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
40
%GC
52.1
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_839851.1 NC_004745_p2 terminase ATPase subunit phrog_2 terminase large subunit head and packaging -1 1223 2995
NP_839857.1 NC_004745_p8 hypothetical protein phrog_175 holin lysis 1 6718 6999
NP_839850.1 NC_004745_p1 portal vertex protein phrog_68 portal protein head and packaging -1 189 1223
NP_839880.1 NC_004745_p31 Cox phrog_272 Cox-like excisionase and repressor integration and excision 1 24807 25094
NP_839852.1 NC_004745_p3 capsid-scaffolding protein phrog_73 head scaffolding protein head and packaging 1 3169 4023
NP_839885.1 NC_004745_p36 DksA-like zinc finger domain containing protein phrog_54 DksA-like zinc-finger protein other 1 26354 26578
NP_839864.1 NC_004745_p15 baseplate wedge subunit phrog_43 baseplate wedge subunit tail 1 10068 10415
NP_839854.1 NC_004745_p5 terminase endonuclease subunit phrog_74 terminase small subunit head and packaging 1 5159 5902
NP_839881.1 NC_004745_p32 hypothetical protein phrog_273 unknown function unknown function 1 25097 25267
NP_839871.1 NC_004745_p22 major tail tube protein phrog_55 head closure connector 1 17669 18187
NP_839889.1 NC_004745_p40 hypothetical protein phrog_3694 unknown function unknown function -1 29530 30522
NP_839869.1 NC_004745_p20 hypothetical protein phrog_7729 unknown function unknown function -1 15286 16065
NP_839875.1 NC_004745_p26 hypothetical protein phrog_76 tail protein tail 1 21127 21606
NP_839876.1 NC_004745_p27 tail protein phrog_52 tail protein tail 1 21606 22769
NP_839877.1 NC_004745_p28 Ogr phrog_603 transcriptional regulator transcription regulation 1 22769 23068
NP_839868.1 NC_004745_p19 hypothetical protein phrog_136 tail fiber assembly protein tail 1 14607 15134
NP_839862.1 NC_004745_p13 hypothetical protein phrog_26 tail completion or Neck1 protein connector 1 8917 9369
NP_839872.1 NC_004745_p23 gpE+E' phrog_103 tail protein tail 1 18245 18672
NP_839861.1 NC_004745_p12 hypothetical protein phrog_65 tail terminator connector 1 8457 8924
NP_839870.1 NC_004745_p21 major tail sheath protein phrog_23 tail sheath tail 1 16466 17656
NP_839879.1 NC_004745_p30 hypothetical protein phrog_147 transcriptional regulator transcription regulation -1 24392 24685
NP_839863.1 NC_004745_p14 hypothetical protein phrog_11 baseplate spike tail 1 9436 10071
NP_839855.1 NC_004745_p6 hypothetical protein phrog_71 head-tail adaptor Ad1 connector 1 6002 6511
NP_839874.1 NC_004745_p25 hypothetical protein phrog_28 tail length tape measure protein tail 1 18665 21112
NP_839888.1 NC_004745_p39 hypothetical protein phrog_1812 unknown function unknown function 1 29122 29574
NP_839882.1 NC_004745_p33 hypothetical protein phrog_235 unknown function unknown function 1 25264 25764
NP_839866.1 NC_004745_p17 hypothetical protein phrog_48 tail protein tail 1 11321 11851
NP_839860.1 NC_004745_p11 LysB phrog_89 Rz-like spanin lysis 1 7924 8349
NP_839859.1 NC_004745_p10 LysA phrog_162 endolysin lysis 1 7511 7936
NP_839878.1 NC_004745_p29 integrase phrog_1 integrase integration and excision -1 23342 24322
NP_839856.1 NC_004745_p7 hypothetical protein phrog_46 baseplate hub tail 1 6511 6714
NP_839886.1 NC_004745_p37 hypothetical protein phrog_154 replication initiation protein DNA, RNA and nucleotide metabolism 1 26575 26850
NP_839883.1 NC_004745_p34 hypothetical protein phrog_128 unknown function unknown function 1 25828 26052
NP_839887.1 NC_004745_p38 hypothetical protein phrog_91 nicking at origin of replication DNA, RNA and nucleotide metabolism 1 26840 29125
NP_839867.1 NC_004745_p18 hypothetical protein phrog_381 tail fiber protein tail 1 11862 14603
NP_839873.1 NC_004745_p24 hypothetical protein phrog_103 tail protein tail 1 18245 18520
NP_839853.1 NC_004745_p4 capsid protein phrog_70 major head protein head and packaging 1 4082 5155
NP_839858.1 NC_004745_p9 hypothetical protein phrog_90 endolysin lysis 1 6999 7496
NP_839884.1 NC_004745_p35 hypothetical protein phrog_265 replication initiation protein DNA, RNA and nucleotide metabolism 1 26052 26351
NP_839865.1 NC_004745_p16 baseplate assembly protein phrog_6 baseplate wedge subunit tail 1 10420 11328