Genomic map of Lactococcus phage P335 sensu lato (NC_004746)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_004746
Definition
Lactococcus phage 4268, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
36596
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
49
%GC
35.36
Number of singletons
2
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_839897.1 NC_004746_p6 transcription regulator phrog_4416 transcriptional regulator transcription regulation 1 2585 2761
NP_839907.1 NC_004746_p16 hypothetical protein phrog_7446 unknown function unknown function 1 8470 8640
NP_839939.1 NC_004746_p48 holin phrog_6918 holin lysis 1 35123 35584
NP_839898.1 NC_004746_p7 hypothetical protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2840 3487
NP_839893.1 NC_004746_p2 cro repressor phrog_3 transcriptional repressor transcription regulation 1 1026 1250
NP_839916.1 NC_004746_p25 hypothetical protein phrog_13719 unknown function unknown function 1 11510 11689
NP_839892.1 NC_004746_p1 repressor protein phrog_8 transcriptional regulator transcription regulation -1 210 752
NP_839937.1 NC_004746_p46 hypothetical protein singleton unknown function unknown function 1 34526 34747
NP_839934.1 NC_004746_p43 tail lysin phrog_167 tail length tape measure protein tail 1 23059 28194
NP_839899.1 NC_004746_p8 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 3502 3717
NP_839909.1 NC_004746_p18 hypothetical protein phrog_121 unknown function unknown function 1 8984 9574
NP_839933.1 NC_004746_p42 hypothetical protein phrog_22898 unknown function unknown function 1 22486 22977
NP_839920.1 NC_004746_p29 hypothetical protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 13157 13675
NP_839910.1 NC_004746_p19 hypothetical protein phrog_6648 unknown function unknown function 1 9571 9921
NP_839908.1 NC_004746_p17 hypothetical protein phrog_3972 unknown function unknown function 1 8653 9012
NP_839906.1 NC_004746_p15 hypothetical protein phrog_5080 unknown function unknown function 1 8255 8461
NP_839914.1 NC_004746_p23 hypothetical protein phrog_19098 unknown function unknown function 1 11159 11323
NP_839904.1 NC_004746_p13 hypothetical protein phrog_2108 unknown function unknown function 1 7371 7538
NP_839895.1 NC_004746_p4 hypothetical protein phrog_823 unknown function unknown function 1 2006 2338
NP_839928.1 NC_004746_p37 hypothetical protein phrog_25 head closure Hc1 connector 1 19822 20172
NP_839894.1 NC_004746_p3 antirepressor phrog_373 anti-repressor transcription regulation 1 1277 1993
NP_839900.1 NC_004746_p9 hypothetical protein phrog_1227 exonuclease DNA, RNA and nucleotide metabolism 1 3721 4527
NP_839921.1 NC_004746_p30 terminase small subunit phrog_83 terminase small subunit head and packaging 1 13803 14258
NP_839923.1 NC_004746_p32 hypothetical protein phrog_1142 unknown function unknown function 1 16127 16345
NP_839935.1 NC_004746_p44 tail protein phrog_202 distal tail protein Dit tail 1 28194 29768
NP_839931.1 NC_004746_p40 major structural protein phrog_88 major tail protein tail 1 21103 21696
NP_839902.1 NC_004746_p11 replisome organizer phrog_5968 replisome organizer DNA, RNA and nucleotide metabolism 1 5668 6480
NP_839932.1 NC_004746_p41 tail component phrog_1346 tail protein tail 1 21841 22257
NP_839903.1 NC_004746_p12 DnaC protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 6490 7374
NP_839917.1 NC_004746_p26 hypothetical protein phrog_25226 unknown function unknown function 1 11826 12098
NP_839929.1 NC_004746_p38 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 20174 20680
NP_839927.1 NC_004746_p36 hypothetical protein phrog_40 head-tail adaptor Ad1 connector 1 19524 19847
NP_839918.1 NC_004746_p27 hypothetical protein phrog_11187 transcriptional regulator transcription regulation 1 12221 12406
NP_839911.1 NC_004746_p20 hypothetical protein phrog_1071 DNA methyltransferase other 1 9918 10568
NP_839915.1 NC_004746_p24 hypothetical protein phrog_8817 unknown function unknown function 1 11331 11513
NP_839896.1 NC_004746_p5 hypothetical protein phrog_5257 unknown function unknown function 1 2340 2588
NP_839924.1 NC_004746_p33 portal protein phrog_12 portal protein head and packaging 1 16342 17520
NP_839936.1 NC_004746_p45 tail-host specificity protein phrog_6468 tail fiber protein; host specificity tail 1 29768 34507
NP_839925.1 NC_004746_p34 ClpP protease phrog_94 head maturation protease head and packaging 1 17563 18270
NP_839905.1 NC_004746_p14 methylase phrog_363 DNA methyltransferase other 1 7525 8082
NP_839926.1 NC_004746_p35 major structural protein phrog_10 major head protein head and packaging 1 18282 19508
NP_839913.1 NC_004746_p22 hypothetical protein phrog_2670 unknown function unknown function 1 10948 11166
NP_839901.1 NC_004746_p10 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 4521 5441
NP_839912.1 NC_004746_p21 hypothetical protein singleton unknown function unknown function 1 10688 10948
NP_839930.1 NC_004746_p39 hypothetical protein phrog_1217 tail protein tail 1 20677 21072
NP_839938.1 NC_004746_p47 hypothetical protein phrog_1893 unknown function unknown function 1 34760 35107
NP_839940.1 NC_004746_p49 lysin phrog_291 endolysin lysis 1 35594 36511
NP_839919.1 NC_004746_p28 hypothetical protein phrog_2198 Alt-like transcription activator transcription regulation 1 12489 12890
NP_839922.1 NC_004746_p31 terminase large subunit phrog_9 terminase large subunit head and packaging 1 14218 16158