Genomic map of Yersinia phage phiA1122 (NC_004777)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_004777
Definition
Yersinia pestis phage phiA1122, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teseptimavirus.
DB of origin
REFSEQ
Length
37555
Host Name
Yersinia pestis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
50
%GC
48.31
Number of singletons
0
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_848284.1 NC_004777_p22 host protein H-NS-interacting protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 14539 14835
NP_848290.1 NC_004777_p28 hypothetical protein phrog_1391 unknown function unknown function 1 16548 16814
NP_848288.1 NC_004777_p26 hypothetical protein phrog_11345 unknown function unknown function 1 16079 16162
NP_848294.1 NC_004777_p32 head-to-tail joining protein phrog_449 head-tail adaptor connector 1 17864 19474
NP_848301.1 NC_004777_p39 internal virion protein B phrog_805 internal virion protein head and packaging 1 25345 25935
NP_848304.1 NC_004777_p42 tail fiber protein phrog_4242 tail fiber protein tail 1 32241 33917
NP_848272.1 NC_004777_p10 hypothetical protein phrog_1312 unknown function unknown function 1 6804 6956
NP_848277.1 NC_004777_p15 lysozyme phrog_822 amidase lysis 1 8799 9254
NP_848278.1 NC_004777_p16 NHN endonuclease phrog_4578 HNH endonuclease DNA, RNA and nucleotide metabolism 1 9318 9683
NP_848306.1 NC_004777_p44 DNA packaging protein, small subunit phrog_1351 terminase small subunit head and packaging 1 34184 34453
NP_848268.1 NC_004777_p6 protein 1.5 phrog_12128 unknown function unknown function 1 5797 5886
NP_848297.1 NC_004777_p35 major capsid protein phrog_267 major head protein head and packaging 1 20587 21621
NP_848273.1 NC_004777_p11 inhibitor of host bacterial RNA polymerase phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 6958 7152
NP_848302.1 NC_004777_p40 internal virion protein C phrog_1339 internal virion protein head and packaging 1 25942 28185
NP_848264.1 NC_004777_p2 T3/T7-like RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 1399 4050
NP_848300.1 NC_004777_p38 internal virion protein A phrog_308 internal virion protein head and packaging 1 24924 25340
NP_848283.1 NC_004777_p21 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 12405 14519
NP_848269.1 NC_004777_p7 hypothetical protein phrog_1777 unknown function unknown function 1 5912 6172
NP_848299.1 NC_004777_p37 tail protein phrog_457 tail protein tail 1 22459 24843
NP_848263.1 NC_004777_p1 protein 0.3 phrog_2568 ocr-like anti-restriction moron, auxiliary metabolic gene and host takeover 1 906 1328
NP_848276.1 NC_004777_p14 protein 3.3 phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 8369 8827
NP_848285.1 NC_004777_p23 hypothetical protein phrog_1334 unknown function unknown function 1 14835 15044
NP_848293.1 NC_004777_p31 protein 7.7 phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 17472 17864
NP_848286.1 NC_004777_p24 host recBCD nuclease inhibitor phrog_9014 Gp5.9-like inihibitor of recBCD nuclease moron, auxiliary metabolic gene and host takeover 1 15044 15202
NP_848292.1 NC_004777_p30 tail assembly protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 17219 17458
NP_848265.1 NC_004777_p3 hypothetical protein phrog_2490 unknown function unknown function 1 4235 4366
NP_848270.1 NC_004777_p8 protein 1.7 phrog_236 nucleotide kinase other 1 6172 6402
NP_848287.1 NC_004777_p25 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 15189 16091
NP_848282.1 NC_004777_p20 protein 4.7 phrog_4023 unknown function unknown function 1 11979 12386
NP_848274.1 NC_004777_p12 single-stranded DNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 7218 7916
NP_848291.1 NC_004777_p29 host range protein phrog_2746 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 16814 17215
NP_848267.1 NC_004777_p5 ATP-dependent DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 4707 5729
NP_848308.1 NC_004777_p46 phage lambda Rz1-like protein phrog_4306 Rz-like spanin lysis 1 34662 34913
NP_848307.1 NC_004777_p45 phage lambda Rz-like lysis protein phrog_1327 Rz-like spanin lysis 1 34547 34990
NP_848312.1 NC_004777_p50 hypothetical protein phrog_2193 unknown function unknown function 1 37019 37168
NP_848305.1 NC_004777_p43 type II holin phrog_920 holin lysis 1 33976 34179
NP_848275.1 NC_004777_p13 endonuclease I phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 7917 8372
NP_848266.1 NC_004777_p4 host dGTPase inhibitor phrog_2949 dGTPase inhibitor; target for F exclusion other 1 4368 4625
NP_848289.1 NC_004777_p27 hypothetical protein phrog_1447 unknown function unknown function 1 16289 16543
NP_848271.1 NC_004777_p9 hypothetical protein phrog_3106 HNH endonuclease DNA, RNA and nucleotide metabolism 1 6383 6853
NP_848280.1 NC_004777_p18 hypothetical protein phrog_1950 unknown function unknown function 1 11404 11616
NP_848295.1 NC_004777_p33 capsid assembly protein phrog_1052 head assembly head and packaging 1 19574 20488
NP_848311.1 NC_004777_p49 hypothetical protein phrog_8173 unknown function unknown function 1 36183 36356
NP_848298.1 NC_004777_p36 tail tubular protein A phrog_446 tail protein tail 1 21848 22438
NP_848303.1 NC_004777_p41 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 28212 32168
NP_848296.1 NC_004777_p34 major capsid protein phrog_267 major head protein head and packaging 1 20587 21779
NP_848281.1 NC_004777_p19 hypothetical protein phrog_2254 unknown function unknown function 1 11636 11905
NP_848279.1 NC_004777_p17 primase/helicase protein phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 9658 11358
NP_848310.1 NC_004777_p48 hypothetical protein phrog_8982 unknown function unknown function 1 35646 35879
NP_848309.1 NC_004777_p47 DNA maturase B phrog_38 terminase large subunit head and packaging 1 35000 36760