| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_004777 |
Definition |
Yersinia pestis phage phiA1122, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teseptimavirus. |
DB of origin |
REFSEQ |
Length |
37555 |
Host Name |
Yersinia pestis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
50 |
%GC |
48.31 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_848284.1 | NC_004777_p22 | host protein H-NS-interacting protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 14539 | 14835 |
| NP_848290.1 | NC_004777_p28 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 16548 | 16814 |
| NP_848288.1 | NC_004777_p26 | hypothetical protein | phrog_11345 | unknown function | unknown function | 1 | 16079 | 16162 |
| NP_848294.1 | NC_004777_p32 | head-to-tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 17864 | 19474 |
| NP_848301.1 | NC_004777_p39 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 25345 | 25935 |
| NP_848304.1 | NC_004777_p42 | tail fiber protein | phrog_4242 | tail fiber protein | tail | 1 | 32241 | 33917 |
| NP_848272.1 | NC_004777_p10 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 6804 | 6956 |
| NP_848277.1 | NC_004777_p15 | lysozyme | phrog_822 | amidase | lysis | 1 | 8799 | 9254 |
| NP_848278.1 | NC_004777_p16 | NHN endonuclease | phrog_4578 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9318 | 9683 |
| NP_848306.1 | NC_004777_p44 | DNA packaging protein, small subunit | phrog_1351 | terminase small subunit | head and packaging | 1 | 34184 | 34453 |
| NP_848268.1 | NC_004777_p6 | protein 1.5 | phrog_12128 | unknown function | unknown function | 1 | 5797 | 5886 |
| NP_848297.1 | NC_004777_p35 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 20587 | 21621 |
| NP_848273.1 | NC_004777_p11 | inhibitor of host bacterial RNA polymerase | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 6958 | 7152 |
| NP_848302.1 | NC_004777_p40 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 25942 | 28185 |
| NP_848264.1 | NC_004777_p2 | T3/T7-like RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 1399 | 4050 |
| NP_848300.1 | NC_004777_p38 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 24924 | 25340 |
| NP_848283.1 | NC_004777_p21 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 12405 | 14519 |
| NP_848269.1 | NC_004777_p7 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 5912 | 6172 |
| NP_848299.1 | NC_004777_p37 | tail protein | phrog_457 | tail protein | tail | 1 | 22459 | 24843 |
| NP_848263.1 | NC_004777_p1 | protein 0.3 | phrog_2568 | ocr-like anti-restriction | moron, auxiliary metabolic gene and host takeover | 1 | 906 | 1328 |
| NP_848276.1 | NC_004777_p14 | protein 3.3 | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 8369 | 8827 |
| NP_848285.1 | NC_004777_p23 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 14835 | 15044 |
| NP_848293.1 | NC_004777_p31 | protein 7.7 | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 17472 | 17864 |
| NP_848286.1 | NC_004777_p24 | host recBCD nuclease inhibitor | phrog_9014 | Gp5.9-like inihibitor of recBCD nuclease | moron, auxiliary metabolic gene and host takeover | 1 | 15044 | 15202 |
| NP_848292.1 | NC_004777_p30 | tail assembly protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 17219 | 17458 |
| NP_848265.1 | NC_004777_p3 | hypothetical protein | phrog_2490 | unknown function | unknown function | 1 | 4235 | 4366 |
| NP_848270.1 | NC_004777_p8 | protein 1.7 | phrog_236 | nucleotide kinase | other | 1 | 6172 | 6402 |
| NP_848287.1 | NC_004777_p25 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 15189 | 16091 |
| NP_848282.1 | NC_004777_p20 | protein 4.7 | phrog_4023 | unknown function | unknown function | 1 | 11979 | 12386 |
| NP_848274.1 | NC_004777_p12 | single-stranded DNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 7218 | 7916 |
| NP_848291.1 | NC_004777_p29 | host range protein | phrog_2746 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 16814 | 17215 |
| NP_848267.1 | NC_004777_p5 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 4707 | 5729 |
| NP_848308.1 | NC_004777_p46 | phage lambda Rz1-like protein | phrog_4306 | Rz-like spanin | lysis | 1 | 34662 | 34913 |
| NP_848307.1 | NC_004777_p45 | phage lambda Rz-like lysis protein | phrog_1327 | Rz-like spanin | lysis | 1 | 34547 | 34990 |
| NP_848312.1 | NC_004777_p50 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 37019 | 37168 |
| NP_848305.1 | NC_004777_p43 | type II holin | phrog_920 | holin | lysis | 1 | 33976 | 34179 |
| NP_848275.1 | NC_004777_p13 | endonuclease I | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 7917 | 8372 |
| NP_848266.1 | NC_004777_p4 | host dGTPase inhibitor | phrog_2949 | dGTPase inhibitor; target for F exclusion | other | 1 | 4368 | 4625 |
| NP_848289.1 | NC_004777_p27 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 16289 | 16543 |
| NP_848271.1 | NC_004777_p9 | hypothetical protein | phrog_3106 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 6383 | 6853 |
| NP_848280.1 | NC_004777_p18 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 11404 | 11616 |
| NP_848295.1 | NC_004777_p33 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 19574 | 20488 |
| NP_848311.1 | NC_004777_p49 | hypothetical protein | phrog_8173 | unknown function | unknown function | 1 | 36183 | 36356 |
| NP_848298.1 | NC_004777_p36 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 21848 | 22438 |
| NP_848303.1 | NC_004777_p41 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 28212 | 32168 |
| NP_848296.1 | NC_004777_p34 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 20587 | 21779 |
| NP_848281.1 | NC_004777_p19 | hypothetical protein | phrog_2254 | unknown function | unknown function | 1 | 11636 | 11905 |
| NP_848279.1 | NC_004777_p17 | primase/helicase protein | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 9658 | 11358 |
| NP_848310.1 | NC_004777_p48 | hypothetical protein | phrog_8982 | unknown function | unknown function | 1 | 35646 | 35879 |
| NP_848309.1 | NC_004777_p47 | DNA maturase B | phrog_38 | terminase large subunit | head and packaging | 1 | 35000 | 36760 |