| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_004814 |
Definition |
Streptococcus phage C1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Caudovirales; Podoviridae; Picovirinae; Rosenblumvirus. |
DB of origin |
REFSEQ |
Length |
16687 |
Host Name |
Streptococcus sp. |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
20 |
%GC |
34.62 |
Number of singletons |
11 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_852011.1 | NC_004814_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2927 | 3550 |
| NP_852020.1 | NC_004814_p14 | lower collar protein | phrog_3225 | adaptor Ad4 | connector | -1 | 12660 | 13370 |
| NP_852017.2 | NC_004814_p11 | PlyCA | phrog_5979 | unknown function | unknown function | 1 | 8045 | 9442 |
| NP_852024.1 | NC_004814_p18 | hypothetical protein | singleton | unknown function | unknown function | -1 | 15743 | 15913 |
| NP_852023.1 | NC_004814_p17 | hypothetical protein | singleton | unknown function | unknown function | -1 | 15583 | 15738 |
| NP_852022.1 | NC_004814_p16 | major capsid protein | phrog_2006 | major head protein | head and packaging | -1 | 14367 | 15545 |
| NP_852025.1 | NC_004814_p19 | hypothetical protein | singleton | unknown function | unknown function | -1 | 16102 | 16296 |
| NP_852009.1 | NC_004814_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1934 | 2470 |
| NP_852008.1 | NC_004814_p2 | phage protien | singleton | unknown function | unknown function | 1 | 1746 | 1934 |
| NP_852016.1 | NC_004814_p10 | lil | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 7735 | 8052 |
| NP_852012.1 | NC_004814_p6 | encapsidation protein | phrog_2150 | terminase | head and packaging | 1 | 3550 | 4776 |
| NP_852019.1 | NC_004814_p13 | hypothetical protein | singleton | unknown function | unknown function | -1 | 11381 | 12673 |
| NP_852007.1 | NC_004814_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 572 | 1093 |
| NP_852014.1 | NC_004814_p8 | holin | phrog_199 | holin | lysis | 1 | 7204 | 7530 |
| NP_852021.1 | NC_004814_p15 | upper collar protein | phrog_2038 | upper collar connector | connector | -1 | 13367 | 14320 |
| NP_852026.1 | NC_004814_p20 | hypothetical protein | singleton | unknown function | unknown function | -1 | 16380 | 16547 |
| NP_852013.1 | NC_004814_p7 | DNA polymerase | phrog_1907 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 4806 | 7160 |
| NP_852010.1 | NC_004814_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2601 | 2918 |
| NP_852015.1 | NC_004814_p9 | PlyCB | singleton | unknown function | unknown function | 1 | 7517 | 7735 |
| NP_852018.1 | NC_004814_p12 | tail protein | phrog_2248 | tail protein | tail | -1 | 9471 | 11195 |