| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_004996 |
Definition |
Streptococcus phage SM1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
34692 |
Host Name |
Streptococcus mitis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
39.15 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_862863.1 | NC_004996_p24 | hypothetical protein | phrog_834 | unknown function | unknown function | 1 | 11963 | 12289 |
| NP_862894.1 | NC_004996_p55 | hypothetical protein | phrog_608 | holin | lysis | 1 | 32918 | 33250 |
| NP_862849.1 | NC_004996_p10 | hypothetical protein | phrog_20017 | unknown function | unknown function | 1 | 4316 | 4468 |
| NP_862840.1 | NC_004996_p1 | hypothetical protein | phrog_1 | integrase | integration and excision | -1 | 103 | 1230 |
| NP_862854.1 | NC_004996_p15 | hypothetical protein | phrog_463 | anti-repressor | transcription regulation | 1 | 6213 | 6932 |
| NP_862844.1 | NC_004996_p5 | hypothetical protein | phrog_4791 | unknown function | unknown function | 1 | 2829 | 2957 |
| NP_862851.1 | NC_004996_p12 | hypothetical protein | phrog_24094 | unknown function | unknown function | 1 | 5138 | 5368 |
| NP_862888.1 | NC_004996_p49 | PblA | phrog_58 | tail length tape measure protein | tail | 1 | 24752 | 27775 |
| NP_862877.1 | NC_004996_p38 | hypothetical protein | phrog_9 | terminase large subunit | head and packaging | 1 | 19068 | 20447 |
| NP_862889.1 | NC_004996_p50 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 27775 | 28470 |
| NP_862885.1 | NC_004996_p46 | hypothetical protein | phrog_117 | major tail protein | tail | 1 | 23492 | 24043 |
| NP_862876.1 | NC_004996_p37 | hypothetical protein | phrog_918 | unknown function | unknown function | 1 | 18753 | 19004 |
| NP_862891.1 | NC_004996_p52 | hypothetical protein | phrog_12683 | unknown function | unknown function | 1 | 31652 | 31861 |
| NP_862842.1 | NC_004996_p3 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 1804 | 2184 |
| NP_862870.1 | NC_004996_p31 | hypothetical protein | phrog_248 | transcriptional activator | transcription regulation | 1 | 14087 | 14512 |
| NP_862850.1 | NC_004996_p11 | hypothetical protein | phrog_3634 | unknown function | unknown function | -1 | 4422 | 5081 |
| NP_862843.1 | NC_004996_p4 | hypothetical protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 2188 | 2541 |
| NP_862852.1 | NC_004996_p13 | hypothetical protein | phrog_6249 | unknown function | unknown function | 1 | 5390 | 5518 |
| NP_862878.1 | NC_004996_p39 | hypothetical protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 20597 | 21031 |
| NP_862860.1 | NC_004996_p21 | hypothetical protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 8995 | 9765 |
| NP_862861.1 | NC_004996_p22 | hypothetical protein | phrog_7445 | unknown function | unknown function | 1 | 10112 | 10585 |
| NP_862887.1 | NC_004996_p48 | hypothetical protein | phrog_1633 | unknown function | unknown function | 1 | 24372 | 24752 |
| NP_862874.1 | NC_004996_p35 | hypothetical protein | phrog_2494 | minor head protein | head and packaging | 1 | 17210 | 18421 |
| NP_862857.1 | NC_004996_p18 | hypothetical protein | phrog_33499 | unknown function | unknown function | 1 | 7610 | 8038 |
| NP_862856.1 | NC_004996_p17 | hypothetical protein | phrog_17359 | unknown function | unknown function | 1 | 7337 | 7594 |
| NP_862853.1 | NC_004996_p14 | hypothetical protein | phrog_1305 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 5481 | 6158 |
| NP_862868.1 | NC_004996_p29 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 13674 | 13925 |
| NP_862883.1 | NC_004996_p44 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 22904 | 23140 |
| NP_862869.1 | NC_004996_p30 | hypothetical protein | phrog_17529 | unknown function | unknown function | 1 | 13903 | 14067 |
| NP_862879.1 | NC_004996_p40 | hypothetical protein | phrog_10 | major head protein | head and packaging | 1 | 21044 | 21946 |
| NP_862882.1 | NC_004996_p43 | hypothetical protein | phrog_501 | head closure Hc1 | connector | 1 | 22573 | 22911 |
| NP_862873.1 | NC_004996_p34 | hypothetical protein | phrog_104 | portal protein | head and packaging | 1 | 15988 | 17220 |
| NP_862847.1 | NC_004996_p8 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 3895 | 4104 |
| NP_862859.1 | NC_004996_p20 | hypothetical protein | phrog_2108 | unknown function | unknown function | 1 | 8843 | 9001 |
| NP_862872.1 | NC_004996_p33 | hypothetical protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 15403 | 15747 |
| NP_862886.1 | NC_004996_p47 | hypothetical protein | phrog_1526 | unknown function | unknown function | 1 | 24046 | 24357 |
| NP_862893.1 | NC_004996_p54 | hypothetical protein | phrog_4257 | unknown function | unknown function | 1 | 32515 | 32931 |
| NP_862871.1 | NC_004996_p32 | hypothetical protein | phrog_216 | integrase | integration and excision | 1 | 14625 | 15191 |
| NP_862858.1 | NC_004996_p19 | hypothetical protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 8058 | 8855 |
| NP_862855.1 | NC_004996_p16 | hypothetical protein | phrog_2273 | unknown function | unknown function | 1 | 7015 | 7287 |
| NP_862862.1 | NC_004996_p23 | hypothetical protein | phrog_7484 | unknown function | unknown function | 1 | 10585 | 11943 |
| NP_862848.1 | NC_004996_p9 | hypothetical protein | phrog_3168 | unknown function | unknown function | 1 | 4108 | 4305 |
| NP_862867.1 | NC_004996_p28 | hypothetical protein | phrog_3476 | unknown function | unknown function | 1 | 13175 | 13591 |
| NP_862846.1 | NC_004996_p7 | hypothetical protein | phrog_1305 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 3160 | 3840 |
| NP_862895.1 | NC_004996_p56 | hypothetical protein | phrog_998 | endolysin | lysis | 1 | 33253 | 34140 |
| NP_862881.1 | NC_004996_p42 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 22191 | 22586 |
| NP_862875.1 | NC_004996_p36 | hypothetical protein | phrog_6332 | unknown function | unknown function | 1 | 18411 | 18590 |
| NP_862865.1 | NC_004996_p26 | hypothetical protein | phrog_2118 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 12580 | 12921 |
| NP_862845.1 | NC_004996_p6 | hypothetical protein | phrog_14088 | unknown function | unknown function | 1 | 2972 | 3184 |
| NP_862892.1 | NC_004996_p53 | hypothetical protein | phrog_1554 | unknown function | unknown function | 1 | 31851 | 32498 |
| NP_862890.1 | NC_004996_p51 | PblB | phrog_1330 | tail protein | tail | 1 | 28467 | 31655 |
| NP_862884.1 | NC_004996_p45 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 23141 | 23476 |
| NP_862864.1 | NC_004996_p25 | hypothetical protein | phrog_33566 | unknown function | unknown function | 1 | 12323 | 12583 |
| NP_862841.1 | NC_004996_p2 | hypothetical protein | phrog_29766 | unknown function | unknown function | -1 | 1351 | 1791 |
| NP_862866.1 | NC_004996_p27 | hypothetical protein | phrog_884 | unknown function | unknown function | 1 | 12918 | 13178 |
| NP_862880.1 | NC_004996_p41 | hypothetical protein | phrog_1539 | Arc-like repressor | transcription regulation | 1 | 21949 | 22170 |