| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_005045 |
Definition |
Pseudomonas phage phiKMV, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Krylovirinae; Phikmvvirus. |
DB of origin |
REFSEQ |
Length |
42519 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
62.29 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_877444.1 | NC_005045_p5 | hypothetical protein | phrog_7027 | unknown function | unknown function | 1 | 3160 | 3387 |
| NP_877485.1 | NC_005045_p47 | phage lambda Rz1-like protein | phrog_214 | Rz-like spanin | lysis | 1 | 40985 | 41314 |
| NP_877478.1 | NC_005045_p40 | hypothetical protein | phrog_17567 | unknown function | unknown function | 1 | 36336 | 36776 |
| NP_877452.1 | NC_005045_p14 | hypothetical protein | phrog_2563 | unknown function | unknown function | 1 | 6582 | 7124 |
| NP_877453.1 | NC_005045_p15 | DnaG-like primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 7310 | 8134 |
| NP_877451.1 | NC_005045_p12 | DNA binding protein | phrog_6982 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 5503 | 6312 |
| NP_877469.1 | NC_005045_p31 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 21623 | 23155 |
| NP_877462.1 | NC_005045_p24 | DNA endonuclease VII | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 16022 | 16462 |
| NP_877473.1 | NC_005045_p35 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 25841 | 28321 |
| NP_877457.1 | NC_005045_p19 | hypothetical protein | phrog_7292 | unknown function | unknown function | 1 | 10922 | 11257 |
| NP_877484.1 | NC_005045_p46 | phage lysozyme | phrog_7 | endolysin | lysis | 1 | 40545 | 41027 |
| NP_877454.1 | NC_005045_p16 | hypothetical protein | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 8178 | 9371 |
| YP_656507.1 | NC_005045_p13 | hypothetical protein | phrog_9409 | unknown function | unknown function | 1 | 6392 | 6811 |
| NP_877443.1 | NC_005045_p4 | hypothetical protein | phrog_6951 | unknown function | unknown function | 1 | 2805 | 3173 |
| NP_877450.1 | NC_005045_p11 | hypothetical protein | phrog_6915 | unknown function | unknown function | 1 | 5141 | 5500 |
| NP_877471.1 | NC_005045_p33 | capsid protein | phrog_267 | major head protein | head and packaging | 1 | 24180 | 25187 |
| NP_877440.1 | NC_005045_p1 | hypothetical protein | phrog_5722 | unknown function | unknown function | 1 | 1746 | 2030 |
| NP_877466.1 | NC_005045_p28 | hypothetical protein | phrog_6575 | unknown function | unknown function | 1 | 20646 | 20897 |
| NP_877487.1 | NC_005045_p49 | minor structural protein | phrog_7171 | minor head protein | head and packaging | 1 | 41768 | 41962 |
| NP_877461.1 | NC_005045_p23 | hypothetical protein | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 15091 | 16032 |
| NP_877476.1 | NC_005045_p38 | virion protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 31566 | 35579 |
| NP_877480.1 | NC_005045_p42 | hypothetical protein | phrog_4950 | tail fiber protein | tail | 1 | 37839 | 38231 |
| NP_877477.1 | NC_005045_p39 | tail fiber protein | phrog_6953 | tail fiber protein | tail | 1 | 35581 | 36336 |
| NP_877481.1 | NC_005045_p43 | hypothetical protein | phrog_891 | terminase small subunit | head and packaging | 1 | 38231 | 38536 |
| NP_877464.1 | NC_005045_p26 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 17515 | 17883 |
| NP_877470.1 | NC_005045_p32 | scaffolding protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 23159 | 24127 |
| NP_877479.1 | NC_005045_p41 | tail fiber protein | phrog_4176 | tail fiber protein | tail | 1 | 36766 | 37644 |
| NP_877460.1 | NC_005045_p22 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 14042 | 15091 |
| NP_877455.1 | NC_005045_p17 | hypothetical protein | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 9361 | 9978 |
| NP_877459.1 | NC_005045_p21 | hypothetical protein | phrog_5437 | unknown function | unknown function | 1 | 13674 | 13985 |
| NP_877448.1 | NC_005045_p9 | hypothetical protein | phrog_4342 | unknown function | unknown function | 1 | 4281 | 4574 |
| NP_877449.1 | NC_005045_p10 | hypothetical protein | phrog_5433 | unknown function | unknown function | 1 | 4653 | 5072 |
| NP_877486.1 | NC_005045_p48 | minor structural protein | phrog_6908 | minor head protein | head and packaging | 1 | 41404 | 41718 |
| NP_877467.1 | NC_005045_p29 | hypothetical protein | phrog_3986 | unknown function | unknown function | 1 | 20897 | 21370 |
| NP_877482.1 | NC_005045_p44 | DNA maturase B | phrog_38 | terminase large subunit | head and packaging | 1 | 38546 | 40351 |
| NP_877458.1 | NC_005045_p20 | DNA directed DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 11254 | 13677 |
| NP_877441.1 | NC_005045_p2 | hypothetical protein | phrog_7124 | unknown function | unknown function | 1 | 2030 | 2257 |
| NP_877472.1 | NC_005045_p34 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 25284 | 25838 |
| NP_877442.1 | NC_005045_p3 | hypothetical protein | phrog_1448 | unknown function | unknown function | 1 | 2268 | 2801 |
| NP_877474.1 | NC_005045_p36 | internal virion protein A | phrog_805 | internal virion protein | head and packaging | 1 | 28321 | 28866 |
| NP_877445.1 | NC_005045_p6 | hypothetical protein | phrog_27649 | unknown function | unknown function | 1 | 3434 | 3745 |
| NP_877446.1 | NC_005045_p7 | hypothetical protein | phrog_4342 | unknown function | unknown function | 1 | 3745 | 4032 |
| NP_877475.1 | NC_005045_p37 | structural protein containing C-terminal lysozyme domain | phrog_2083 | internal virion lysozyme motif | head and packaging | 1 | 28866 | 31562 |
| NP_877447.1 | NC_005045_p8 | hypothetical protein | phrog_4955 | unknown function | unknown function | 1 | 4029 | 4265 |
| NP_877456.1 | NC_005045_p18 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 9978 | 10925 |
| NP_877465.1 | NC_005045_p27 | T3/T7-like RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 18035 | 20485 |
| NP_877463.1 | NC_005045_p25 | hypothetical protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 16459 | 17505 |
| NP_877483.1 | NC_005045_p45 | hypothetical protein | phrog_6597 | holin | lysis | 1 | 40348 | 40548 |
| NP_877468.1 | NC_005045_p30 | structural protein | phrog_3112 | virion structural protein | head and packaging | 1 | 21315 | 21611 |