| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_005069 |
Definition |
Yersinia phage PY54, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
46339 |
Host Name |
Yersinia enterocolitica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
67 |
%GC |
44.57 |
Number of singletons |
13 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_892091.1 | NC_005069_p46 | recombination associated protein | phrog_724 | exonuclease recombination-associated | DNA, RNA and nucleotide metabolism | 1 | 34654 | 35631 |
| NP_892056.1 | NC_005069_p11 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7830 | 8237 |
| NP_892095.1 | NC_005069_p50 | hypothetical protein | phrog_1229 | unknown function | unknown function | 1 | 36571 | 37038 |
| NP_892068.1 | NC_005069_p23 | hypothetical protein | singleton | unknown function | unknown function | -1 | 16949 | 17269 |
| NP_892075.1 | NC_005069_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22418 | 22765 |
| NP_892060.1 | NC_005069_p15 | tape measure protein | phrog_339 | tail length tape measure protein | tail | 1 | 9605 | 12868 |
| NP_892064.1 | NC_005069_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14113 | 14583 |
| NP_892086.1 | NC_005069_p41 | Cro repressor | phrog_409 | transcriptional regulator | transcription regulation | 1 | 32629 | 32832 |
| NP_892103.1 | NC_005069_p58 | hypothetical protein | phrog_497 | toxin-antitoxin system HicB-like | moron, auxiliary metabolic gene and host takeover | -1 | 39891 | 40325 |
| NP_892108.1 | NC_005069_p63 | hypothetical protein | phrog_1327 | Rz-like spanin | lysis | 1 | 43479 | 44000 |
| NP_892104.1 | NC_005069_p59 | hypothetical protein | phrog_331 | unknown function | unknown function | 1 | 40722 | 40955 |
| NP_892087.1 | NC_005069_p42 | hypothetical protein | phrog_4834 | CII-like transcriptional activator | transcription regulation | 1 | 32747 | 33451 |
| NP_892110.1 | NC_005069_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44442 | 44837 |
| NP_892061.1 | NC_005069_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12522 | 12749 |
| NP_892052.1 | NC_005069_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6234 | 6800 |
| NP_892066.1 | NC_005069_p21 | hypothetical protein | singleton | unknown function | unknown function | -1 | 14794 | 15036 |
| NP_892081.1 | NC_005069_p36 | relication protein RepA | phrog_4913 | replication | DNA, RNA and nucleotide metabolism | -1 | 27631 | 31623 |
| NP_892078.1 | NC_005069_p33 | hypothetical protein | phrog_6018 | unknown function | unknown function | -1 | 26544 | 26915 |
| NP_892096.1 | NC_005069_p51 | exonuclease | phrog_255 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 37042 | 37614 |
| NP_892085.1 | NC_005069_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32319 | 32564 |
| NP_892099.1 | NC_005069_p54 | hypothetical protein | phrog_13995 | unknown function | unknown function | 1 | 38366 | 38596 |
| NP_892059.1 | NC_005069_p14 | hypothetical protein | phrog_344 | tail assembly chaperone | tail | 1 | 9001 | 9372 |
| NP_892070.1 | NC_005069_p25 | tail fiber protein | phrog_4128 | tail fiber protein | tail | 1 | 18588 | 20660 |
| NP_892105.1 | NC_005069_p60 | DNA adenine-methylase | phrog_67 | DNA methyltransferase | other | 1 | 41231 | 42304 |
| NP_892058.1 | NC_005069_p13 | tail protein | phrog_4069 | Hoc-like head decoration | head and packaging | 1 | 8708 | 8992 |
| NP_892055.1 | NC_005069_p10 | hypothetical protein | phrog_347 | tail terminator | connector | 1 | 7402 | 7824 |
| NP_892106.1 | NC_005069_p61 | hypothetical protein | phrog_20 | holin | lysis | 1 | 42687 | 42953 |
| NP_892074.1 | NC_005069_p29 | plasmid partition protein SopA | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | -1 | 22313 | 23482 |
| NP_892047.1 | NC_005069_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 568 | 2301 |
| NP_892072.1 | NC_005069_p27 | tail fiber assembly protein | phrog_188 | tail fiber assembly protein | tail | 1 | 20660 | 21067 |
| NP_892107.1 | NC_005069_p62 | lysis protein | phrog_7 | endolysin | lysis | 1 | 42953 | 43486 |
| NP_892111.1 | NC_005069_p66 | lysis protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 45025 | 45387 |
| NP_892054.1 | NC_005069_p9 | hypothetical protein | phrog_25 | head closure Hc1 | connector | 1 | 7110 | 7463 |
| NP_892093.1 | NC_005069_p48 | hypothetical protein | phrog_1372 | unknown function | unknown function | 1 | 35883 | 36410 |
| NP_892109.1 | NC_005069_p64 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 44029 | 44355 |
| NP_892051.1 | NC_005069_p6 | hypothetical protein | singleton | unknown function | unknown function | -1 | 6158 | 6574 |
| NP_892098.1 | NC_005069_p53 | hypothetical protein | phrog_1511 | unknown function | unknown function | 1 | 37972 | 38382 |
| NP_892089.1 | NC_005069_p44 | hypothetical protein | phrog_6795 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | 1 | 34077 | 34427 |
| NP_892097.1 | NC_005069_p52 | hypothetical protein | phrog_599 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | 1 | 37538 | 37978 |
| NP_892100.1 | NC_005069_p55 | DNA adenine-methylase | phrog_111 | DNA methyltransferase | other | 1 | 38596 | 39228 |
| NP_892080.1 | NC_005069_p35 | hypothetical protein | phrog_10878 | unknown function | unknown function | -1 | 27304 | 27615 |
| NP_892076.1 | NC_005069_p31 | immunity repressor Icd | phrog_1743 | transcriptional repressor | transcription regulation | 1 | 23858 | 24022 |
| NP_892102.1 | NC_005069_p57 | antirepressor AntA | phrog_10889 | anti-repressor | transcription regulation | 1 | 39601 | 39864 |
| NP_892049.1 | NC_005069_p4 | capsid protein | phrog_53 | head maturation protease | head and packaging | 1 | 3906 | 4817 |
| NP_892065.1 | NC_005069_p20 | hypothetical protein | phrog_2134 | unknown function | unknown function | 1 | 14605 | 15006 |
| NP_892101.1 | NC_005069_p56 | hypothetical protein | phrog_189 | RecA filament binding protein DinI | DNA, RNA and nucleotide metabolism | 1 | 39315 | 39551 |
| YP_227604.1 | NC_005069_p1 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 61 | 504 |
| NP_892050.1 | NC_005069_p5 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 5068 | 6168 |
| NP_892067.1 | NC_005069_p22 | tail protein | phrog_31 | central tail fiber J | tail | 1 | 14999 | 17542 |
| NP_892077.1 | NC_005069_p32 | protelomerase | phrog_5272 | unknown function | unknown function | 1 | 24604 | 26490 |
| NP_892088.1 | NC_005069_p43 | antiterminator Q | phrog_304 | anti-termination protein Q-like | transcription regulation | 1 | 33452 | 34165 |
| NP_892071.1 | NC_005069_p26 | hypothetical protein | singleton | unknown function | unknown function | -1 | 19139 | 19402 |
| NP_892048.1 | NC_005069_p3 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2492 | 3751 |
| NP_892092.1 | NC_005069_p47 | hypothetical protein | phrog_1212 | unknown function | unknown function | 1 | 35634 | 35834 |
| NP_892082.1 | NC_005069_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29846 | 30091 |
| NP_892062.1 | NC_005069_p17 | hypothetical protein | phrog_1302 | distal tail protein | tail | 1 | 12872 | 13468 |
| NP_892053.1 | NC_005069_p8 | hypothetical protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 6778 | 7110 |
| NP_892079.1 | NC_005069_p34 | hypothetical protein | phrog_21746 | unknown function | unknown function | -1 | 26928 | 27257 |
| NP_892069.1 | NC_005069_p24 | hypothetical protein | phrog_1265 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 17553 | 18575 |
| NP_892083.1 | NC_005069_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31862 | 32131 |
| NP_892084.1 | NC_005069_p39 | prophage repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 31877 | 32524 |
| NP_892112.1 | NC_005069_p67 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | 1 | 45456 | 45830 |
| NP_892090.1 | NC_005069_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34430 | 34672 |
| NP_892063.1 | NC_005069_p18 | hypothetical protein | phrog_2048 | tail protein | tail | 1 | 13468 | 14052 |
| NP_892073.1 | NC_005069_p28 | partitioning protein SpyB | phrog_1146 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | -1 | 21135 | 22316 |
| NP_892057.1 | NC_005069_p12 | hypothetical protein | phrog_158 | major tail protein | tail | 1 | 8280 | 8732 |
| NP_892094.1 | NC_005069_p49 | hypothetical protein | phrog_20542 | unknown function | unknown function | 1 | 36407 | 36706 |