Genomic map of Yersinia phage PY54 (NC_005069)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_005069
Definition
Yersinia phage PY54, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
46339
Host Name
Yersinia enterocolitica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
67
%GC
44.57
Number of singletons
13
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_892091.1 NC_005069_p46 recombination associated protein phrog_724 exonuclease recombination-associated DNA, RNA and nucleotide metabolism 1 34654 35631
NP_892056.1 NC_005069_p11 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 7830 8237
NP_892095.1 NC_005069_p50 hypothetical protein phrog_1229 unknown function unknown function 1 36571 37038
NP_892068.1 NC_005069_p23 hypothetical protein singleton unknown function unknown function -1 16949 17269
NP_892075.1 NC_005069_p30 hypothetical protein singleton unknown function unknown function 1 22418 22765
NP_892060.1 NC_005069_p15 tape measure protein phrog_339 tail length tape measure protein tail 1 9605 12868
NP_892064.1 NC_005069_p19 hypothetical protein singleton unknown function unknown function 1 14113 14583
NP_892086.1 NC_005069_p41 Cro repressor phrog_409 transcriptional regulator transcription regulation 1 32629 32832
NP_892103.1 NC_005069_p58 hypothetical protein phrog_497 toxin-antitoxin system HicB-like moron, auxiliary metabolic gene and host takeover -1 39891 40325
NP_892108.1 NC_005069_p63 hypothetical protein phrog_1327 Rz-like spanin lysis 1 43479 44000
NP_892104.1 NC_005069_p59 hypothetical protein phrog_331 unknown function unknown function 1 40722 40955
NP_892087.1 NC_005069_p42 hypothetical protein phrog_4834 CII-like transcriptional activator transcription regulation 1 32747 33451
NP_892110.1 NC_005069_p65 hypothetical protein singleton unknown function unknown function 1 44442 44837
NP_892061.1 NC_005069_p16 hypothetical protein singleton unknown function unknown function 1 12522 12749
NP_892052.1 NC_005069_p7 hypothetical protein singleton unknown function unknown function 1 6234 6800
NP_892066.1 NC_005069_p21 hypothetical protein singleton unknown function unknown function -1 14794 15036
NP_892081.1 NC_005069_p36 relication protein RepA phrog_4913 replication DNA, RNA and nucleotide metabolism -1 27631 31623
NP_892078.1 NC_005069_p33 hypothetical protein phrog_6018 unknown function unknown function -1 26544 26915
NP_892096.1 NC_005069_p51 exonuclease phrog_255 exonuclease DNA, RNA and nucleotide metabolism 1 37042 37614
NP_892085.1 NC_005069_p40 hypothetical protein singleton unknown function unknown function 1 32319 32564
NP_892099.1 NC_005069_p54 hypothetical protein phrog_13995 unknown function unknown function 1 38366 38596
NP_892059.1 NC_005069_p14 hypothetical protein phrog_344 tail assembly chaperone tail 1 9001 9372
NP_892070.1 NC_005069_p25 tail fiber protein phrog_4128 tail fiber protein tail 1 18588 20660
NP_892105.1 NC_005069_p60 DNA adenine-methylase phrog_67 DNA methyltransferase other 1 41231 42304
NP_892058.1 NC_005069_p13 tail protein phrog_4069 Hoc-like head decoration head and packaging 1 8708 8992
NP_892055.1 NC_005069_p10 hypothetical protein phrog_347 tail terminator connector 1 7402 7824
NP_892106.1 NC_005069_p61 hypothetical protein phrog_20 holin lysis 1 42687 42953
NP_892074.1 NC_005069_p29 plasmid partition protein SopA phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism -1 22313 23482
NP_892047.1 NC_005069_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 568 2301
NP_892072.1 NC_005069_p27 tail fiber assembly protein phrog_188 tail fiber assembly protein tail 1 20660 21067
NP_892107.1 NC_005069_p62 lysis protein phrog_7 endolysin lysis 1 42953 43486
NP_892111.1 NC_005069_p66 lysis protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 45025 45387
NP_892054.1 NC_005069_p9 hypothetical protein phrog_25 head closure Hc1 connector 1 7110 7463
NP_892093.1 NC_005069_p48 hypothetical protein phrog_1372 unknown function unknown function 1 35883 36410
NP_892109.1 NC_005069_p64 hypothetical protein phrog_355 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism 1 44029 44355
NP_892051.1 NC_005069_p6 hypothetical protein singleton unknown function unknown function -1 6158 6574
NP_892098.1 NC_005069_p53 hypothetical protein phrog_1511 unknown function unknown function 1 37972 38382
NP_892089.1 NC_005069_p44 hypothetical protein phrog_6795 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover 1 34077 34427
NP_892097.1 NC_005069_p52 hypothetical protein phrog_599 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover 1 37538 37978
NP_892100.1 NC_005069_p55 DNA adenine-methylase phrog_111 DNA methyltransferase other 1 38596 39228
NP_892080.1 NC_005069_p35 hypothetical protein phrog_10878 unknown function unknown function -1 27304 27615
NP_892076.1 NC_005069_p31 immunity repressor Icd phrog_1743 transcriptional repressor transcription regulation 1 23858 24022
NP_892102.1 NC_005069_p57 antirepressor AntA phrog_10889 anti-repressor transcription regulation 1 39601 39864
NP_892049.1 NC_005069_p4 capsid protein phrog_53 head maturation protease head and packaging 1 3906 4817
NP_892065.1 NC_005069_p20 hypothetical protein phrog_2134 unknown function unknown function 1 14605 15006
NP_892101.1 NC_005069_p56 hypothetical protein phrog_189 RecA filament binding protein DinI DNA, RNA and nucleotide metabolism 1 39315 39551
YP_227604.1 NC_005069_p1 terminase small subunit phrog_83 terminase small subunit head and packaging 1 61 504
NP_892050.1 NC_005069_p5 capsid protein phrog_10 major head protein head and packaging 1 5068 6168
NP_892067.1 NC_005069_p22 tail protein phrog_31 central tail fiber J tail 1 14999 17542
NP_892077.1 NC_005069_p32 protelomerase phrog_5272 unknown function unknown function 1 24604 26490
NP_892088.1 NC_005069_p43 antiterminator Q phrog_304 anti-termination protein Q-like transcription regulation 1 33452 34165
NP_892071.1 NC_005069_p26 hypothetical protein singleton unknown function unknown function -1 19139 19402
NP_892048.1 NC_005069_p3 portal protein phrog_12 portal protein head and packaging 1 2492 3751
NP_892092.1 NC_005069_p47 hypothetical protein phrog_1212 unknown function unknown function 1 35634 35834
NP_892082.1 NC_005069_p37 hypothetical protein singleton unknown function unknown function 1 29846 30091
NP_892062.1 NC_005069_p17 hypothetical protein phrog_1302 distal tail protein tail 1 12872 13468
NP_892053.1 NC_005069_p8 hypothetical protein phrog_40 head-tail adaptor Ad1 connector 1 6778 7110
NP_892079.1 NC_005069_p34 hypothetical protein phrog_21746 unknown function unknown function -1 26928 27257
NP_892069.1 NC_005069_p24 hypothetical protein phrog_1265 membrane protein moron, auxiliary metabolic gene and host takeover 1 17553 18575
NP_892083.1 NC_005069_p38 hypothetical protein singleton unknown function unknown function 1 31862 32131
NP_892084.1 NC_005069_p39 prophage repressor phrog_4 transcriptional repressor transcription regulation -1 31877 32524
NP_892112.1 NC_005069_p67 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision 1 45456 45830
NP_892090.1 NC_005069_p45 hypothetical protein singleton unknown function unknown function 1 34430 34672
NP_892063.1 NC_005069_p18 hypothetical protein phrog_2048 tail protein tail 1 13468 14052
NP_892073.1 NC_005069_p28 partitioning protein SpyB phrog_1146 ParB-like partition protein DNA, RNA and nucleotide metabolism -1 21135 22316
NP_892057.1 NC_005069_p12 hypothetical protein phrog_158 major tail protein tail 1 8280 8732
NP_892094.1 NC_005069_p49 hypothetical protein phrog_20542 unknown function unknown function 1 36407 36706