| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_005178 |
Definition |
Pseudomonas phage D3112, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus. |
DB of origin |
REFSEQ |
Length |
37611 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
64.34 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_938257.1 | NC_005178_p50 | hypothetical protein | phrog_778 | tail assembly protein | tail | 1 | 32460 | 33236 |
| NP_938227.1 | NC_005178_p20 | hypothetical protein | phrog_1024 | unknown function | unknown function | 1 | 11041 | 11487 |
| NP_938210.1 | NC_005178_p3 | hypothetical protein | phrog_2345 | transcriptional regulator | transcription regulation | 1 | 1391 | 1825 |
| NP_938239.1 | NC_005178_p32 | hypothetical protein | phrog_18309 | unknown function | unknown function | 1 | 19470 | 19574 |
| NP_938237.1 | NC_005178_p30 | hypothetical protein | phrog_19304 | unknown function | unknown function | 1 | 18927 | 19199 |
| NP_938232.1 | NC_005178_p25 | hypothetical protein | phrog_1244 | unknown function | unknown function | -1 | 13255 | 13791 |
| NP_938242.1 | NC_005178_p35 | major head subunit protein | phrog_371 | major head protein | head and packaging | 1 | 21334 | 22242 |
| NP_938218.1 | NC_005178_p11 | hypothetical protein | phrog_2119 | unknown function | unknown function | 1 | 6863 | 7276 |
| NP_938217.1 | NC_005178_p10 | hypothetical protein | phrog_3765 | unknown function | unknown function | 1 | 6747 | 6863 |
| NP_938256.1 | NC_005178_p49 | hypothetical protein | phrog_1082 | tail assembly protein | tail | 1 | 30722 | 32425 |
| NP_938255.1 | NC_005178_p48 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 29799 | 30722 |
| NP_938230.1 | NC_005178_p23 | hypothetical protein | phrog_1103 | unknown function | unknown function | 1 | 12554 | 12742 |
| NP_938229.1 | NC_005178_p22 | hypothetical protein | phrog_2975 | Rz-like spanin | lysis | 1 | 12042 | 12443 |
| NP_938258.1 | NC_005178_p51 | hypothetical protein | phrog_1180 | tail assembly chaperone | tail | 1 | 33245 | 33484 |
| NP_938226.1 | NC_005178_p19 | integral membrane protein | phrog_836 | late transcriptional activator | transcription regulation | 1 | 10197 | 10646 |
| NP_938254.1 | NC_005178_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29357 | 29797 |
| NP_938208.1 | NC_005178_p1 | c repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 173 | 895 |
| NP_938209.1 | NC_005178_p2 | Ner-like protein | phrog_769 | transcriptional repressor | transcription regulation | 1 | 1044 | 1388 |
| NP_938233.1 | NC_005178_p26 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | 1 | 13790 | 15445 |
| NP_938235.1 | NC_005178_p28 | virion morphogenesis protein | phrog_220 | minor head protein and DNA pilot | head and packaging | 1 | 17043 | 18329 |
| NP_938253.1 | NC_005178_p46 | hypothetical protein | phrog_36425 | unknown function | unknown function | 1 | 28840 | 29391 |
| NP_938236.1 | NC_005178_p29 | virion morphogenesis protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 18329 | 18796 |
| NP_938248.1 | NC_005178_p41 | hypothetical protein | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 23884 | 24654 |
| NP_938215.1 | NC_005178_p8 | hypothetical protein | phrog_2030 | transcriptional regulator | transcription regulation | 1 | 5387 | 6055 |
| NP_938234.1 | NC_005178_p27 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 15457 | 17043 |
| NP_938250.1 | NC_005178_p43 | hypothetical protein | phrog_10839 | unknown function | unknown function | 1 | 25143 | 25271 |
| NP_938261.1 | NC_005178_p54 | hypothetical protein | phrog_2875 | virion structural protein | head and packaging | 1 | 35893 | 37044 |
| NP_938228.1 | NC_005178_p21 | structural protein P5 | phrog_873 | endolysin | head and packaging | 1 | 11510 | 11926 |
| NP_938225.1 | NC_005178_p18 | hypothetical protein | phrog_286 | unknown function | unknown function | 1 | 9803 | 10210 |
| NP_938216.1 | NC_005178_p9 | hypothetical protein | phrog_3190 | unknown function | unknown function | 1 | 6127 | 6762 |
| NP_938211.1 | NC_005178_p4 | hypothetical protein | phrog_8647 | unknown function | unknown function | 1 | 1825 | 2151 |
| NP_938222.1 | NC_005178_p15 | hypothetical protein | phrog_12417 | unknown function | unknown function | 1 | 8680 | 9168 |
| NP_938212.1 | NC_005178_p5 | hypothetical protein | phrog_4468 | unknown function | unknown function | 1 | 2148 | 2558 |
| NP_938224.1 | NC_005178_p17 | hypothetical protein | phrog_14676 | unknown function | unknown function | 1 | 9624 | 9806 |
| NP_938244.1 | NC_005178_p37 | hypothetical protein | phrog_3376 | unknown function | unknown function | 1 | 22619 | 22795 |
| NP_938251.1 | NC_005178_p44 | tail component protein | singleton | unknown function | unknown function | 1 | 25274 | 26818 |
| NP_938259.1 | NC_005178_p52 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 33481 | 33699 |
| NP_938252.1 | NC_005178_p45 | tail component protein | phrog_24 | tail length tape measure protein | tail | 1 | 26671 | 28833 |
| NP_938220.1 | NC_005178_p13 | host nuclease inhibitor protein | phrog_18351 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 7567 | 8367 |
| NP_938241.1 | NC_005178_p34 | hypothetical protein | phrog_1731 | virion structural protein | head and packaging | 1 | 20908 | 21306 |
| NP_938243.1 | NC_005178_p36 | hypothetical protein | phrog_7976 | unknown function | unknown function | 1 | 22254 | 22556 |
| NP_938223.1 | NC_005178_p16 | hypothetical protein | phrog_3652 | unknown function | unknown function | 1 | 9171 | 9440 |
| NP_938221.1 | NC_005178_p14 | hypothetical protein | phrog_4367 | unknown function | unknown function | 1 | 8369 | 8677 |
| NP_938240.1 | NC_005178_p33 | protease (I) and scaffold (Z) proteins | phrog_328 | head maturation protease | head and packaging | 1 | 19918 | 20898 |
| NP_938249.1 | NC_005178_p42 | hypothetical protein | phrog_1442 | tail assembly chaperone | tail | 1 | 24658 | 25143 |
| NP_938246.1 | NC_005178_p39 | hypothetical protein | phrog_209 | portal protein | head and packaging | 1 | 23205 | 23684 |
| NP_938247.1 | NC_005178_p40 | hypothetical protein | phrog_3129 | unknown function | unknown function | 1 | 23672 | 23851 |
| NP_938260.1 | NC_005178_p53 | hypothetical protein | phrog_1101 | tail protein | tail | 1 | 33689 | 35896 |
| NP_938245.1 | NC_005178_p38 | hypothetical protein | phrog_195 | head-tail adaptor | connector | 1 | 22792 | 23208 |
| NP_938213.1 | NC_005178_p6 | A transposase | phrog_310 | transposase | integration and excision | 1 | 2551 | 4623 |
| NP_938214.1 | NC_005178_p7 | DNA transposition protein | phrog_296 | DNA transposition protein | integration and excision | 1 | 4620 | 5390 |
| NP_938238.1 | NC_005178_p31 | hypothetical protein | phrog_17406 | unknown function | unknown function | 1 | 19205 | 19363 |
| NP_938262.1 | NC_005178_p55 | hypothetical protein | phrog_2432 | unknown function | unknown function | 1 | 37041 | 37334 |
| NP_938231.1 | NC_005178_p24 | hypothetical protein | phrog_756 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 12753 | 13253 |
| NP_938219.1 | NC_005178_p12 | hypothetical protein | phrog_2043 | unknown function | unknown function | 1 | 7263 | 7550 |