Genomic map of Pseudomonas virus D3112 (NC_005178)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_005178
Definition
Pseudomonas phage D3112, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus.
DB of origin
REFSEQ
Length
37611
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
55
%GC
64.34
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_938257.1 NC_005178_p50 hypothetical protein phrog_778 tail assembly protein tail 1 32460 33236
NP_938227.1 NC_005178_p20 hypothetical protein phrog_1024 unknown function unknown function 1 11041 11487
NP_938210.1 NC_005178_p3 hypothetical protein phrog_2345 transcriptional regulator transcription regulation 1 1391 1825
NP_938239.1 NC_005178_p32 hypothetical protein phrog_18309 unknown function unknown function 1 19470 19574
NP_938237.1 NC_005178_p30 hypothetical protein phrog_19304 unknown function unknown function 1 18927 19199
NP_938232.1 NC_005178_p25 hypothetical protein phrog_1244 unknown function unknown function -1 13255 13791
NP_938242.1 NC_005178_p35 major head subunit protein phrog_371 major head protein head and packaging 1 21334 22242
NP_938218.1 NC_005178_p11 hypothetical protein phrog_2119 unknown function unknown function 1 6863 7276
NP_938217.1 NC_005178_p10 hypothetical protein phrog_3765 unknown function unknown function 1 6747 6863
NP_938256.1 NC_005178_p49 hypothetical protein phrog_1082 tail assembly protein tail 1 30722 32425
NP_938255.1 NC_005178_p48 hypothetical protein phrog_687 structural protein head and packaging 1 29799 30722
NP_938230.1 NC_005178_p23 hypothetical protein phrog_1103 unknown function unknown function 1 12554 12742
NP_938229.1 NC_005178_p22 hypothetical protein phrog_2975 Rz-like spanin lysis 1 12042 12443
NP_938258.1 NC_005178_p51 hypothetical protein phrog_1180 tail assembly chaperone tail 1 33245 33484
NP_938226.1 NC_005178_p19 integral membrane protein phrog_836 late transcriptional activator transcription regulation 1 10197 10646
NP_938254.1 NC_005178_p47 hypothetical protein singleton unknown function unknown function 1 29357 29797
NP_938208.1 NC_005178_p1 c repressor phrog_4 transcriptional repressor transcription regulation -1 173 895
NP_938209.1 NC_005178_p2 Ner-like protein phrog_769 transcriptional repressor transcription regulation 1 1044 1388
NP_938233.1 NC_005178_p26 hypothetical protein phrog_38 terminase large subunit head and packaging 1 13790 15445
NP_938235.1 NC_005178_p28 virion morphogenesis protein phrog_220 minor head protein and DNA pilot head and packaging 1 17043 18329
NP_938253.1 NC_005178_p46 hypothetical protein phrog_36425 unknown function unknown function 1 28840 29391
NP_938236.1 NC_005178_p29 virion morphogenesis protein phrog_26 tail completion or Neck1 protein connector 1 18329 18796
NP_938248.1 NC_005178_p41 hypothetical protein phrog_807 major tail protein with Ig-like domain tail 1 23884 24654
NP_938215.1 NC_005178_p8 hypothetical protein phrog_2030 transcriptional regulator transcription regulation 1 5387 6055
NP_938234.1 NC_005178_p27 portal protein phrog_113 portal protein head and packaging 1 15457 17043
NP_938250.1 NC_005178_p43 hypothetical protein phrog_10839 unknown function unknown function 1 25143 25271
NP_938261.1 NC_005178_p54 hypothetical protein phrog_2875 virion structural protein head and packaging 1 35893 37044
NP_938228.1 NC_005178_p21 structural protein P5 phrog_873 endolysin head and packaging 1 11510 11926
NP_938225.1 NC_005178_p18 hypothetical protein phrog_286 unknown function unknown function 1 9803 10210
NP_938216.1 NC_005178_p9 hypothetical protein phrog_3190 unknown function unknown function 1 6127 6762
NP_938211.1 NC_005178_p4 hypothetical protein phrog_8647 unknown function unknown function 1 1825 2151
NP_938222.1 NC_005178_p15 hypothetical protein phrog_12417 unknown function unknown function 1 8680 9168
NP_938212.1 NC_005178_p5 hypothetical protein phrog_4468 unknown function unknown function 1 2148 2558
NP_938224.1 NC_005178_p17 hypothetical protein phrog_14676 unknown function unknown function 1 9624 9806
NP_938244.1 NC_005178_p37 hypothetical protein phrog_3376 unknown function unknown function 1 22619 22795
NP_938251.1 NC_005178_p44 tail component protein singleton unknown function unknown function 1 25274 26818
NP_938259.1 NC_005178_p52 hypothetical protein phrog_1196 tail assembly chaperone tail 1 33481 33699
NP_938252.1 NC_005178_p45 tail component protein phrog_24 tail length tape measure protein tail 1 26671 28833
NP_938220.1 NC_005178_p13 host nuclease inhibitor protein phrog_18351 host nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 7567 8367
NP_938241.1 NC_005178_p34 hypothetical protein phrog_1731 virion structural protein head and packaging 1 20908 21306
NP_938243.1 NC_005178_p36 hypothetical protein phrog_7976 unknown function unknown function 1 22254 22556
NP_938223.1 NC_005178_p16 hypothetical protein phrog_3652 unknown function unknown function 1 9171 9440
NP_938221.1 NC_005178_p14 hypothetical protein phrog_4367 unknown function unknown function 1 8369 8677
NP_938240.1 NC_005178_p33 protease (I) and scaffold (Z) proteins phrog_328 head maturation protease head and packaging 1 19918 20898
NP_938249.1 NC_005178_p42 hypothetical protein phrog_1442 tail assembly chaperone tail 1 24658 25143
NP_938246.1 NC_005178_p39 hypothetical protein phrog_209 portal protein head and packaging 1 23205 23684
NP_938247.1 NC_005178_p40 hypothetical protein phrog_3129 unknown function unknown function 1 23672 23851
NP_938260.1 NC_005178_p53 hypothetical protein phrog_1101 tail protein tail 1 33689 35896
NP_938245.1 NC_005178_p38 hypothetical protein phrog_195 head-tail adaptor connector 1 22792 23208
NP_938213.1 NC_005178_p6 A transposase phrog_310 transposase integration and excision 1 2551 4623
NP_938214.1 NC_005178_p7 DNA transposition protein phrog_296 DNA transposition protein integration and excision 1 4620 5390
NP_938238.1 NC_005178_p31 hypothetical protein phrog_17406 unknown function unknown function 1 19205 19363
NP_938262.1 NC_005178_p55 hypothetical protein phrog_2432 unknown function unknown function 1 37041 37334
NP_938231.1 NC_005178_p24 hypothetical protein phrog_756 DNA binding protein DNA, RNA and nucleotide metabolism 1 12753 13253
NP_938219.1 NC_005178_p12 hypothetical protein phrog_2043 unknown function unknown function 1 7263 7550