| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_005263 |
Definition |
Burkholderia phage Bcep1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Naesvirus. |
DB of origin |
REFSEQ |
Length |
48177 |
Host Name |
Burkholderia cenocepacia |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
71 |
%GC |
63.64 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_944343.1 | NC_005263_p34 | hypothetical protein | phrog_587 | structural protein | head and packaging | -1 | 24452 | 25129 |
| NP_944312.1 | NC_005263_p4 | hypothetical protein | phrog_205 | tail sheath | tail | -1 | 1788 | 3293 |
| NP_944329.1 | NC_005263_p21 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 16652 | 17905 |
| NP_944375.1 | NC_005263_p67 | hypothetical protein | phrog_16943 | unknown function | unknown function | 1 | 45872 | 46372 |
| NP_944374.1 | NC_005263_p66 | phage DNA Pol I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 43861 | 45828 |
| NP_944333.1 | NC_005263_p25 | hypothetical membrane protein | phrog_21554 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 19747 | 20076 |
| NP_944348.1 | NC_005263_p39 | hypothetical protein | phrog_21497 | unknown function | unknown function | -1 | 27781 | 27972 |
| NP_944325.1 | NC_005263_p17 | hypothetical protein | phrog_324 | head morphogenesis | head and packaging | -1 | 11200 | 12144 |
| NP_944322.1 | NC_005263_p14 | minor structural protein | phrog_2122 | minor head protein | head and packaging | -1 | 8894 | 9397 |
| NP_944365.1 | NC_005263_p56 | hypothetical protein | phrog_17526 | unknown function | unknown function | 1 | 39676 | 39996 |
| NP_944359.1 | NC_005263_p50 | hypothetical protein | phrog_20222 | unknown function | unknown function | -1 | 33867 | 34091 |
| YP_022514.1 | NC_005263_p59 | hypothetical protein | phrog_21312 | unknown function | unknown function | 1 | 40371 | 40580 |
| NP_944378.1 | NC_005263_p70 | hypothetical membrane protein | phrog_21604 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 47659 | 48012 |
| NP_944368.1 | NC_005263_p60 | Uvs helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 40701 | 42545 |
| NP_944324.1 | NC_005263_p16 | hypothetical protein | phrog_33834 | unknown function | unknown function | 1 | 11030 | 11158 |
| NP_944360.1 | NC_005263_p51 | possible tail fiber | phrog_32740 | tail fiber protein | tail | -1 | 34158 | 35723 |
| NP_944349.1 | NC_005263_p40 | hypothetical protein | phrog_196 | baseplate hub | tail | -1 | 27969 | 28895 |
| NP_944347.1 | NC_005263_p38 | hypothetical protein | phrog_11 | baseplate spike | tail | -1 | 27045 | 27788 |
| NP_944334.3 | NC_005263_p26 | hypothetical protein | phrog_20897 | unknown function | unknown function | 1 | 19955 | 20275 |
| NP_944350.1 | NC_005263_p41 | hypothetical membrane protein | phrog_21283 | unknown function | unknown function | -1 | 28911 | 29432 |
| NP_944357.2 | NC_005263_p48 | hypothetical protein | phrog_18181 | unknown function | unknown function | -1 | 33006 | 33518 |
| NP_944335.1 | NC_005263_p27 | hypothetical protein | phrog_20760 | unknown function | unknown function | 1 | 20334 | 20792 |
| NP_944373.1 | NC_005263_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43610 | 43795 |
| NP_944327.1 | NC_005263_p19 | TerL | phrog_38 | terminase large subunit | head and packaging | -1 | 14243 | 15766 |
| NP_944323.1 | NC_005263_p15 | hypothetical protein | phrog_2229 | head maturation protease | head and packaging | -1 | 9443 | 10834 |
| NP_944363.1 | NC_005263_p54 | phage DNA helicase | phrog_16593 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 37041 | 39515 |
| NP_944346.1 | NC_005263_p37 | hypothetical protein | phrog_19712 | unknown function | unknown function | -1 | 26848 | 27042 |
| NP_944311.1 | NC_005263_p3 | hypothetical protein | phrog_1964 | virion structural protein | head and packaging | -1 | 1302 | 1736 |
| NP_944342.1 | NC_005263_p33 | possible tail fiber | phrog_12796 | tail fiber protein | tail | -1 | 23023 | 24441 |
| NP_944371.1 | NC_005263_p63 | helix-turn-helix family protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 43139 | 43342 |
| NP_944372.1 | NC_005263_p64 | hypothetical protein | phrog_1411 | unknown function | unknown function | 1 | 43352 | 43558 |
| NP_944310.1 | NC_005263_p2 | hypothetical protein | phrog_2423 | unknown function | unknown function | -1 | 1064 | 1264 |
| NP_944336.1 | NC_005263_p28 | endolysin | phrog_1224 | endolysin | head and packaging | 1 | 20794 | 21561 |
| NP_944370.1 | NC_005263_p62 | hypothetical protein | phrog_15216 | unknown function | unknown function | 1 | 42911 | 43126 |
| NP_944351.1 | NC_005263_p42 | hypothetical protein | phrog_21177 | unknown function | unknown function | -1 | 29448 | 29594 |
| NP_944362.1 | NC_005263_p53 | hypothetical protein | phrog_120 | baseplate wedge subunit | tail | -1 | 36106 | 36486 |
| NP_944355.2 | NC_005263_p46 | hypothetical protein | phrog_1830 | unknown function | unknown function | -1 | 31995 | 32594 |
| NP_944309.1 | NC_005263_p1 | hypothetical protein | phrog_5335 | unknown function | unknown function | -1 | 37 | 924 |
| NP_944326.1 | NC_005263_p18 | membrane-localized nudix hydrolase | phrog_15528 | portal protein | head and packaging | -1 | 12144 | 14240 |
| NP_944352.1 | NC_005263_p43 | hypothetical protein | phrog_21965 | unknown function | unknown function | -1 | 29603 | 29809 |
| NP_944367.1 | NC_005263_p58 | hypothetical protein | phrog_20230 | unknown function | unknown function | 1 | 40196 | 40351 |
| NP_944314.1 | NC_005263_p6 | hypothetical protein | phrog_1912 | head protein | head and packaging | -1 | 3902 | 4360 |
| NP_944320.1 | NC_005263_p12 | hypothetical protein | phrog_757 | DNA methyltransferase | other | -1 | 7170 | 7715 |
| NP_944361.1 | NC_005263_p52 | hypothetical protein | phrog_349 | virion structural protein | head and packaging | -1 | 35720 | 36109 |
| NP_944318.1 | NC_005263_p10 | DNA modification methylase | phrog_67 | DNA methyltransferase | other | -1 | 5779 | 6480 |
| NP_944358.1 | NC_005263_p49 | hypothetical protein | phrog_36269 | unknown function | unknown function | -1 | 33672 | 33863 |
| NP_944376.1 | NC_005263_p68 | hypothetical protein | phrog_17223 | unknown function | unknown function | 1 | 46458 | 46769 |
| NP_944328.1 | NC_005263_p20 | hypothetical protein | phrog_16968 | unknown function | unknown function | -1 | 15756 | 16253 |
| NP_944315.1 | NC_005263_p7 | possible transcription factor | phrog_222 | tail completion or Neck1 protein | connector | -1 | 4357 | 4824 |
| NP_944341.1 | NC_005263_p32 | hypothetical protein | phrog_14370 | unknown function | unknown function | -1 | 22839 | 23018 |
| NP_944330.1 | NC_005263_p22 | hypothetical protein | phrog_16841 | unknown function | unknown function | 1 | 18045 | 18755 |
| NP_944331.1 | NC_005263_p23 | Holliday junction resolvase | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 19001 | 19396 |
| NP_944340.1 | NC_005263_p31 | antiholin | phrog_785 | holin | lysis | -1 | 22495 | 22821 |
| NP_944332.1 | NC_005263_p24 | hypothetical protein | phrog_19682 | unknown function | unknown function | 1 | 19445 | 19750 |
| NP_944369.1 | NC_005263_p61 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42526 | 42924 |
| NP_944354.1 | NC_005263_p45 | hypothetical membrane protein | phrog_9570 | tail length tape measure protein | tail | -1 | 30138 | 31991 |
| NP_944319.1 | NC_005263_p11 | hypothetical protein | phrog_21699 | unknown function | unknown function | -1 | 6667 | 7110 |
| NP_944345.1 | NC_005263_p36 | hypothetical protein | phrog_21112 | unknown function | unknown function | -1 | 26446 | 26625 |
| NP_944379.2 | NC_005263_p71 | hypothetical protein | phrog_599 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | 1 | 48009 | 48176 |
| NP_944356.1 | NC_005263_p47 | hypothetical protein | phrog_1932 | tail assembly chaperone | tail | -1 | 32599 | 33009 |
| NP_944366.1 | NC_005263_p57 | hypothetical protein | phrog_18086 | unknown function | unknown function | 1 | 39993 | 40199 |
| NP_944353.1 | NC_005263_p44 | hypothetical membrane protein | phrog_29445 | unknown function | unknown function | -1 | 29806 | 30069 |
| NP_944344.1 | NC_005263_p35 | hypothetical protein | phrog_6 | baseplate wedge subunit | tail | -1 | 25126 | 26394 |
| NP_944339.1 | NC_005263_p30 | holin | phrog_785 | holin | lysis | -1 | 22495 | 22842 |
| NP_944364.1 | NC_005263_p55 | hypothetical protein | phrog_20496 | unknown function | unknown function | 1 | 39536 | 39679 |
| NP_944337.1 | NC_005263_p29 | hypothetical protein | phrog_21375 | unknown function | unknown function | 1 | 21629 | 22285 |
| NP_944321.1 | NC_005263_p13 | major structural protein | phrog_264 | major head protein | head and packaging | -1 | 7825 | 8835 |
| NP_944317.1 | NC_005263_p9 | hypothetical protein | phrog_2085 | unknown function | unknown function | -1 | 5310 | 5693 |
| NP_944377.1 | NC_005263_p69 | possible tail fiber | phrog_19506 | tail protein | tail | 1 | 46806 | 47612 |
| NP_944313.1 | NC_005263_p5 | hypothetical protein | phrog_1876 | unknown function | unknown function | -1 | 3369 | 3905 |
| NP_944316.1 | NC_005263_p8 | hypothetical protein | phrog_302 | virion structural protein | head and packaging | -1 | 4821 | 5297 |