| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_005294 |
Definition |
Streptococcus prophage EJ-1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae. |
DB of origin |
REFSEQ |
Length |
42935 |
Host Name |
Streptococcus pneumoniae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
73 |
%GC |
39.64 |
Number of singletons |
6 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_945254.1 | NC_005294_p15 | transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 8725 | 8901 |
| NP_945263.1 | NC_005294_p24 | hypothetical protein | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 12407 | 12922 |
| NP_945308.1 | NC_005294_p69 | hypothetical protein | phrog_6487 | unknown function | unknown function | 1 | 39755 | 40231 |
| NP_945279.1 | NC_005294_p40 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 20861 | 22276 |
| NP_945293.1 | NC_005294_p54 | core tail protein | phrog_365 | tail protein | tail | 1 | 29683 | 30147 |
| NP_945241.1 | NC_005294_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1497 | 1943 |
| NP_945257.1 | NC_005294_p18 | hypothetical protein | phrog_5637 | unknown function | unknown function | 1 | 9667 | 9810 |
| NP_945274.1 | NC_005294_p35 | transcriptional regulator | phrog_9969 | transcriptional regulator | transcription regulation | -1 | 16620 | 16907 |
| NP_945296.1 | NC_005294_p57 | hypothetical protein | phrog_380 | endolysin | lysis | 1 | 33023 | 33715 |
| NP_945243.1 | NC_005294_p4 | cI repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 3529 | 4332 |
| NP_945305.1 | NC_005294_p66 | hypothetical protein | phrog_33657 | unknown function | unknown function | 1 | 38299 | 38724 |
| NP_945292.1 | NC_005294_p53 | sheath tail protein | phrog_279 | tail sheath | tail | 1 | 28356 | 29669 |
| NP_945247.1 | NC_005294_p8 | hypothetical protein | phrog_16734 | unknown function | unknown function | 1 | 5170 | 5364 |
| NP_945307.1 | NC_005294_p68 | hypothetical protein | phrog_1296 | holin | lysis | 1 | 39462 | 39740 |
| NP_945253.1 | NC_005294_p14 | hypothetical protein | phrog_10400 | unknown function | unknown function | 1 | 8385 | 8528 |
| NP_945288.1 | NC_005294_p49 | hypothetical protein | phrog_615 | head-tail adaptor | connector | 1 | 26952 | 27299 |
| NP_945290.1 | NC_005294_p51 | hypothetical protein | phrog_525 | unknown function | unknown function | 1 | 27777 | 28193 |
| NP_945248.1 | NC_005294_p9 | hypothetical protein | phrog_1305 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 5326 | 6099 |
| NP_945240.1 | NC_005294_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 106 | 1248 |
| NP_945294.1 | NC_005294_p55 | hypothetical protein | phrog_389 | tail protein XkdN-like | tail | 1 | 30163 | 30759 |
| NP_945295.1 | NC_005294_p56 | tail length tape measure protein | phrog_1068 | tail length tape measure protein | tail | 1 | 30763 | 33009 |
| NP_945282.1 | NC_005294_p43 | hypothetical protein | phrog_3755 | unknown function | unknown function | 1 | 24027 | 24200 |
| NP_945268.1 | NC_005294_p29 | hypothetical protein | phrog_884 | unknown function | unknown function | 1 | 14190 | 14450 |
| NP_945275.1 | NC_005294_p36 | hypothetical protein | phrog_248 | transcriptional activator | transcription regulation | 1 | 16965 | 17411 |
| NP_945310.1 | NC_005294_p71 | hypothetical protein | phrog_21909 | unknown function | unknown function | 1 | 40564 | 41280 |
| NP_945270.1 | NC_005294_p31 | DNA-binding protein | phrog_1992 | MazG-like pyrophosphatase | other | 1 | 14857 | 15354 |
| NP_945287.1 | NC_005294_p48 | hypothetical protein | phrog_132 | head-tail adaptor | connector | 1 | 26550 | 26945 |
| NP_945297.1 | NC_005294_p58 | hypothetical protein | phrog_400 | tail protein | tail | 1 | 33712 | 34680 |
| NP_945284.1 | NC_005294_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24467 | 24607 |
| NP_945278.1 | NC_005294_p39 | terminase, large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 19591 | 20856 |
| NP_945309.1 | NC_005294_p70 | hypothetical protein | phrog_4757 | unknown function | unknown function | 1 | 40238 | 40558 |
| NP_945271.1 | NC_005294_p32 | transcriptional regulator | phrog_323 | transcriptional regulator, D5-like | transcription regulation | 1 | 15477 | 16037 |
| NP_945255.1 | NC_005294_p16 | excisionase | phrog_904 | excisionase | integration and excision | 1 | 8980 | 9291 |
| NP_945266.1 | NC_005294_p27 | hypothetical protein | phrog_5513 | unknown function | unknown function | 1 | 13709 | 13918 |
| NP_945252.1 | NC_005294_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8201 | 8371 |
| NP_945242.1 | NC_005294_p3 | hypothetical protein | phrog_1847 | unknown function | unknown function | -1 | 1959 | 3500 |
| NP_945251.1 | NC_005294_p12 | DnaC protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 7392 | 8204 |
| NP_945256.1 | NC_005294_p17 | hypothetical protein | phrog_1490 | lipoprotein | other | 1 | 9303 | 9650 |
| NP_945300.1 | NC_005294_p61 | tail protein | phrog_6 | baseplate wedge subunit | tail | 1 | 35367 | 36494 |
| NP_945281.1 | NC_005294_p42 | hypothetical protein | phrog_6332 | unknown function | unknown function | 1 | 23764 | 23973 |
| NP_945259.1 | NC_005294_p20 | hypothetical protein | phrog_2553 | unknown function | unknown function | 1 | 9916 | 10095 |
| NP_945283.1 | NC_005294_p44 | hypothetical protein | phrog_5469 | unknown function | unknown function | 1 | 24226 | 24378 |
| NP_945246.1 | NC_005294_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5061 | 5165 |
| NP_945245.1 | NC_005294_p6 | hypothetical protein | phrog_4761 | unknown function | unknown function | 1 | 4856 | 4999 |
| NP_945298.1 | NC_005294_p59 | hypothetical protein | phrog_579 | unknown function | unknown function | 1 | 34680 | 34982 |
| NP_945286.1 | NC_005294_p47 | major head protein | phrog_247 | major head protein | head and packaging | 1 | 25542 | 26534 |
| NP_945249.1 | NC_005294_p10 | Cro repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 6308 | 6535 |
| NP_945272.1 | NC_005294_p33 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 16039 | 16263 |
| NP_945276.1 | NC_005294_p37 | transferase | phrog_498 | DNA methyltransferase | other | 1 | 17847 | 19112 |
| NP_945303.1 | NC_005294_p64 | tail fiber protein | phrog_25620 | tail collar fiber protein | tail | 1 | 37348 | 37797 |
| NP_945273.1 | NC_005294_p34 | transcriptional regulator | singleton | unknown function | unknown function | -1 | 16415 | 16636 |
| NP_945312.1 | NC_005294_p73 | N-acetylmuramoyl-L-alanine amidase | phrog_1110 | endolysin | lysis | 1 | 41555 | 42505 |
| NP_945267.1 | NC_005294_p28 | hypothetical protein | phrog_5415 | unknown function | unknown function | 1 | 13918 | 14193 |
| NP_945244.1 | NC_005294_p5 | hypothetical protein | phrog_5570 | unknown function | unknown function | 1 | 4508 | 4783 |
| NP_945302.1 | NC_005294_p63 | hypothetical protein | phrog_6293 | unknown function | unknown function | 1 | 37080 | 37355 |
| NP_945258.1 | NC_005294_p19 | hypothetical protein | phrog_4614 | unknown function | unknown function | 1 | 9797 | 9919 |
| NP_945280.1 | NC_005294_p41 | minor head protein | phrog_2494 | minor head protein | head and packaging | 1 | 22257 | 23801 |
| NP_945304.1 | NC_005294_p65 | structural phage protein | phrog_27494 | virion structural protein | head and packaging | 1 | 37802 | 38290 |
| NP_945262.1 | NC_005294_p23 | hypothetical protein | phrog_1341 | unknown function | unknown function | 1 | 12078 | 12410 |
| NP_945311.1 | NC_005294_p72 | holin | phrog_297 | holin | lysis | 1 | 41296 | 41553 |
| NP_945260.1 | NC_005294_p21 | hypothetical protein | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 10092 | 11063 |
| NP_945289.1 | NC_005294_p50 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 27296 | 27787 |
| NP_945285.1 | NC_005294_p46 | scaffolding protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 24961 | 25542 |
| NP_945269.1 | NC_005294_p30 | hypothetical protein | phrog_8899 | unknown function | unknown function | 1 | 14447 | 14848 |
| NP_945261.1 | NC_005294_p22 | hypothetical protein | phrog_1227 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 11067 | 11903 |
| NP_945277.1 | NC_005294_p38 | hypothetical protein | phrog_2412 | unknown function | unknown function | 1 | 19142 | 19603 |
| NP_945264.1 | NC_005294_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12934 | 13215 |
| NP_945306.1 | NC_005294_p67 | hypothetical protein | phrog_1554 | unknown function | unknown function | 1 | 38731 | 39450 |
| NP_945301.1 | NC_005294_p62 | hypothetical protein | phrog_521 | tail protein | tail | 1 | 36494 | 37087 |
| NP_945250.1 | NC_005294_p11 | DnaD protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 6532 | 7380 |
| NP_945265.1 | NC_005294_p26 | hypothetical protein | phrog_121 | unknown function | unknown function | 1 | 13223 | 13708 |
| NP_945299.1 | NC_005294_p60 | hypothetical protein | phrog_120 | baseplate wedge subunit | tail | 1 | 34985 | 35377 |
| NP_945291.1 | NC_005294_p52 | hypothetical protein | phrog_966 | unknown function | unknown function | 1 | 28186 | 28356 |