| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_005342 |
Definition |
Burkholderia phage Bcep43, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Naesvirus. |
DB of origin |
REFSEQ |
Length |
48024 |
Host Name |
Burkholderia cepacia |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
65 |
%GC |
63.43 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_958170.1 | NC_005342_p65 | hypothetical membrane protein | phrog_21604 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 47653 | 47997 |
| NP_958114.1 | NC_005342_p10 | DNA modification methylase | phrog_67 | DNA methyltransferase | other | -1 | 5731 | 6519 |
| NP_958118.1 | NC_005342_p13 | minor structural protein | phrog_2122 | minor head protein | head and packaging | -1 | 8319 | 8822 |
| NP_958158.2 | NC_005342_p51 | phage DNA helicase | phrog_16593 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 36570 | 39191 |
| NP_958119.1 | NC_005342_p14 | hypothetical protein | phrog_2229 | head maturation protease | head and packaging | -1 | 8868 | 10259 |
| NP_958130.2 | NC_005342_p25 | hypothetical protein | phrog_20897 | unknown function | unknown function | 1 | 19699 | 20019 |
| NP_958163.1 | NC_005342_p57 | Uvs helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 40377 | 42221 |
| NP_958138.1 | NC_005342_p32 | hypothetical protein | phrog_587 | structural protein | head and packaging | -1 | 23856 | 24533 |
| NP_958160.1 | NC_005342_p53 | hypothetical protein | phrog_17526 | unknown function | unknown function | 1 | 39352 | 39672 |
| NP_958139.1 | NC_005342_p33 | hypothetical protein | phrog_6 | baseplate wedge subunit | tail | -1 | 24541 | 25809 |
| NP_958162.1 | NC_005342_p55 | hypothetical protein | phrog_20230 | unknown function | unknown function | 1 | 39872 | 40027 |
| NP_958143.1 | NC_005342_p37 | hypothetical protein | phrog_21497 | unknown function | unknown function | -1 | 27197 | 27388 |
| NP_958113.1 | NC_005342_p9 | hypothetical protein | phrog_2085 | unknown function | unknown function | -1 | 5284 | 5667 |
| NP_958165.1 | NC_005342_p60 | hypothetical protein | phrog_31981 | unknown function | unknown function | 1 | 43532 | 43768 |
| NP_958167.1 | NC_005342_p62 | hypothetical protein | phrog_16943 | unknown function | unknown function | 1 | 45849 | 46349 |
| NP_958112.1 | NC_005342_p8 | hypothetical protein | phrog_302 | virion structural protein | head and packaging | -1 | 4795 | 5271 |
| NP_958156.1 | NC_005342_p49 | hypothetical protein | phrog_349 | virion structural protein | head and packaging | -1 | 35397 | 35786 |
| NP_958127.1 | NC_005342_p22 | Holliday junction resolvase | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 18754 | 19140 |
| NP_958144.1 | NC_005342_p38 | hypothetical protein | phrog_196 | baseplate hub | tail | -1 | 27385 | 28311 |
| NP_958146.1 | NC_005342_p40 | hypothetical protein | phrog_21177 | unknown function | unknown function | -1 | 28861 | 29007 |
| NP_958107.1 | NC_005342_p3 | hypothetical protein | phrog_1964 | virion structural protein | head and packaging | -1 | 1276 | 1710 |
| YP_022750.1 | NC_005342_p59 | hypothetical protein | phrog_15216 | unknown function | unknown function | 1 | 43304 | 43519 |
| NP_958151.1 | NC_005342_p45 | hypothetical protein | phrog_1932 | tail assembly chaperone | tail | -1 | 31929 | 32339 |
| NP_958142.1 | NC_005342_p36 | hypothetical protein | phrog_11 | baseplate spike | tail | -1 | 26461 | 27204 |
| NP_958137.1 | NC_005342_p31 | possible tail fiber | phrog_38625 | tail fiber protein | tail | -1 | 22532 | 23845 |
| NP_958126.1 | NC_005342_p21 | hypothetical protein | phrog_16841 | unknown function | unknown function | 1 | 17948 | 18655 |
| NP_958131.1 | NC_005342_p26 | hypothetical protein | phrog_20760 | unknown function | unknown function | 1 | 20045 | 20566 |
| NP_958150.1 | NC_005342_p44 | hypothetical protein | phrog_1830 | unknown function | unknown function | -1 | 31325 | 31924 |
| NP_958148.1 | NC_005342_p42 | hypothetical membrane protein | singleton | unknown function | unknown function | -1 | 29221 | 29400 |
| NP_958109.1 | NC_005342_p5 | hypothetical protein | phrog_1876 | unknown function | unknown function | -1 | 3343 | 3879 |
| NP_958129.1 | NC_005342_p24 | hypothetical membrane protein | phrog_21554 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 19491 | 19820 |
| NP_958135.1 | NC_005342_p29 | holin | phrog_785 | holin | lysis | -1 | 22174 | 22521 |
| NP_958120.1 | NC_005342_p15 | DNA Pol III b subunit fragment | phrog_3007 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 10407 | 10988 |
| NP_958105.1 | NC_005342_p1 | hypothetical protein | phrog_5335 | unknown function | unknown function | -1 | 10 | 897 |
| NP_958169.1 | NC_005342_p64 | possible tail fiber | phrog_19506 | tail protein | tail | 1 | 46783 | 47607 |
| NP_958123.1 | NC_005342_p18 | TerL | phrog_38 | terminase large subunit | head and packaging | -1 | 14013 | 15536 |
| NP_958168.1 | NC_005342_p63 | hypothetical protein | phrog_17223 | unknown function | unknown function | 1 | 46435 | 46746 |
| NP_958136.1 | NC_005342_p30 | antiholin | phrog_785 | holin | lysis | -1 | 22174 | 22500 |
| NP_958159.1 | NC_005342_p52 | hypothetical protein | phrog_20496 | unknown function | unknown function | 1 | 39212 | 39355 |
| NP_958132.2 | NC_005342_p27 | endolysin | phrog_1224 | endolysin | head and packaging | 1 | 20568 | 21335 |
| NP_958106.1 | NC_005342_p2 | hypothetical protein | phrog_2423 | unknown function | unknown function | -1 | 1038 | 1238 |
| NP_958116.1 | NC_005342_p11 | hypothetical protein | phrog_21699 | unknown function | unknown function | -1 | 6676 | 7140 |
| NP_958117.1 | NC_005342_p12 | major structural protein | phrog_264 | major head protein | head and packaging | -1 | 7250 | 8260 |
| NP_958133.2 | NC_005342_p28 | hypothetical protein | phrog_21375 | unknown function | unknown function | 1 | 21403 | 21963 |
| NP_958140.1 | NC_005342_p34 | hypothetical protein | phrog_21112 | unknown function | unknown function | -1 | 25861 | 26040 |
| NP_958147.1 | NC_005342_p41 | hypothetical protein | phrog_21965 | unknown function | unknown function | -1 | 29018 | 29224 |
| NP_958153.1 | NC_005342_p47 | hypothetical protein | phrog_20222 | unknown function | unknown function | -1 | 33029 | 33253 |
| NP_958110.1 | NC_005342_p6 | hypothetical protein | phrog_1912 | head protein | head and packaging | -1 | 3876 | 4334 |
| NP_958161.1 | NC_005342_p54 | hypothetical protein | phrog_18086 | unknown function | unknown function | 1 | 39669 | 39875 |
| NP_958157.1 | NC_005342_p50 | hypothetical protein | phrog_120 | baseplate wedge subunit | tail | -1 | 35783 | 36163 |
| NP_958121.1 | NC_005342_p16 | hypothetical protein | phrog_324 | head morphogenesis | head and packaging | -1 | 10985 | 11926 |
| NP_958155.2 | NC_005342_p48 | possible tail fiber | phrog_33320 | tail fiber protein | tail | -1 | 33321 | 35394 |
| NP_958125.2 | NC_005342_p20 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 16436 | 17710 |
| NP_958149.1 | NC_005342_p43 | hypothetical membrane protein | phrog_9570 | tail length tape measure protein | tail | -1 | 29468 | 31321 |
| NP_958124.1 | NC_005342_p19 | hypothetical protein | phrog_16968 | unknown function | unknown function | -1 | 15526 | 16038 |
| NP_958122.1 | NC_005342_p17 | membrane-localized nudix hydrolase protein | phrog_15528 | portal protein | head and packaging | -1 | 11926 | 14010 |
| NP_958152.1 | NC_005342_p46 | hypothetical protein | phrog_18181 | unknown function | unknown function | -1 | 32336 | 32848 |
| NP_958145.1 | NC_005342_p39 | hypothetical membrane protein | phrog_21283 | unknown function | unknown function | -1 | 28327 | 28845 |
| YP_022749.1 | NC_005342_p56 | hypothetical protein | phrog_21312 | unknown function | unknown function | 1 | 40047 | 40256 |
| NP_958166.1 | NC_005342_p61 | phage DNA Pol I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 43835 | 45805 |
| NP_958128.1 | NC_005342_p23 | hypothetical protein | phrog_19682 | unknown function | unknown function | 1 | 19189 | 19494 |
| NP_958141.1 | NC_005342_p35 | hypothetical protein | phrog_19712 | unknown function | unknown function | -1 | 26264 | 26458 |
| NP_958111.1 | NC_005342_p7 | possible transcription factor | phrog_222 | tail completion or Neck1 protein | connector | -1 | 4331 | 4798 |
| NP_958164.1 | NC_005342_p58 | hypothetical protein | phrog_35663 | unknown function | unknown function | 1 | 42232 | 43317 |
| NP_958108.1 | NC_005342_p4 | hypothetical protein | phrog_205 | tail sheath | tail | -1 | 1762 | 3267 |