Genomic map of Shigella phage Sf6 (NC_005344)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_005344
Definition
Enterobacteria phage Sf6, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Lederbergvirus.
DB of origin
REFSEQ
Length
39043
Host Name
Shigella flexneri
Host domain
Bacteria
Is prophage?
undef
Number of proteins
66
%GC
47.46
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_958181.1 NC_005344_p5 coat protein phrog_283 major head protein head and packaging 1 4871 6142
NP_958188.1 NC_005344_p12 DNA injection protein phrog_2534 released from the phage upon host infection other 1 10262 11557
NP_958223.1 NC_005344_p47 similar to phage 933W L0091 protein phrog_343 unknown function unknown function 1 30927 31235
NP_958183.1 NC_005344_p7 head completion protein phrog_637 head-tail adaptor Ad3 connector 1 6345 6827
NP_958182.1 NC_005344_p6 similar to phage HK620 gene HKbT protein phrog_3251 unknown function unknown function 1 6185 6370
NP_958206.1 NC_005344_p30 similar to phage HK97 gene 42.1 protein phrog_2123 recombinase other -1 22718 22876
NP_958222.1 NC_005344_p46 hypothetical protein phrog_7185 unknown function unknown function 1 30715 30915
NP_958191.1 NC_005344_p15 lipopolysaccharide O-antigen acetylase phrog_3333 O-acetyltransferase other -1 15624 16625
NP_958204.1 NC_005344_p28 recombination protein phrog_1097 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 21911 22618
NP_958195.1 NC_005344_p19 similar to phage 933W gene L0063 protein phrog_3680 unknown function unknown function -1 18497 18808
NP_958199.1 NC_005344_p23 similar to phage HK620 gene HKaI protein phrog_1117 unknown function unknown function -1 20173 20340
NP_958208.1 NC_005344_p32 host FtsH protease inhibitor phrog_550 CIII anti-termination transcription regulation -1 23010 23141
NP_958179.1 NC_005344_p3 portal protein phrog_156 portal protein head and packaging 1 1835 3961
NP_958178.1 NC_005344_p2 large terminase subunit phrog_2 terminase large subunit head and packaging 1 420 1832
NP_958239.1 NC_005344_p63 similar to prophage Sp3 gene ECs0822 protein phrog_11822 unknown function unknown function 1 37668 37820
NP_958241.1 NC_005344_p65 similar to phage HK620 gene HKbM protein phrog_571 unknown function unknown function 1 38601 38843
NP_958227.1 NC_005344_p51 similar to phage lambda nin56 (ninF) protein phrog_672 unknown function unknown function 1 32615 32785
NP_958216.1 NC_005344_p40 transcriptional activator protein phrog_191 CII-like transcriptional activator transcription regulation 1 27539 27817
NP_958190.1 NC_005344_p14 tail spike protein phrog_28781 tail spike protein tail 1 13719 15590
NP_958229.1 NC_005344_p53 IS911 transposase orfB phrog_157 transposase integration and excision -1 32887 33807
NP_958237.1 NC_005344_p61 lysis in presence of divalent cations protein phrog_13 Rz-like spanin lysis 1 37243 37680
NP_958203.1 NC_005344_p27 single-stranded DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 21437 21910
NP_958180.1 NC_005344_p4 scaffolding protein phrog_648 head scaffolding protein head and packaging 1 3975 4859
NP_958197.1 NC_005344_p21 similar to phage 933W gene L0069 protein phrog_60 unknown function unknown function -1 19195 19875
NP_958193.1 NC_005344_p17 phage HK620 HKaB protein homolog phrog_18701 unknown function unknown function -1 18055 18195
NP_958233.1 NC_005344_p57 late operon transcriptional antitermination protein phrog_943 anti-termination protein Q-like transcription regulation 1 35484 36002
NP_958226.1 NC_005344_p50 Phage HK620 HKbB protein homolog phrog_288 unknown function unknown function 1 32436 32618
NP_958238.1 NC_005344_p62 lysis protein phrog_3198 Rz-like spanin lysis 1 37442 37627
NP_958202.1 NC_005344_p26 hypothetical protein phrog_2340 endonuclease DNA, RNA and nucleotide metabolism -1 20948 21427
NP_958186.1 NC_005344_p10 virion stabilization protein phrog_651 head morphogenesis head and packaging 1 9102 9557
NP_958184.1 NC_005344_p8 head completion protein phrog_578 head closure Hc3 connector 1 6836 8254
NP_958177.1 NC_005344_p1 small terminase subunit phrog_1482 terminase small subunit head and packaging 1 1 423
NP_958194.1 NC_005344_p18 phage HK620 HKaC protein homolog phrog_66 excisionase and transcriptional regulator integration and excision -1 18188 18388
NP_958200.1 NC_005344_p24 similar to phage P2 gene Orf83 phrog_154 replication initiation protein DNA, RNA and nucleotide metabolism -1 20337 20627
NP_958236.1 NC_005344_p60 endolysin protein phrog_90 endolysin lysis 1 36770 37246
NP_958212.1 NC_005344_p36 similar to phage T4 gene Orf55.4 phrog_1871 unknown function unknown function -1 25129 25266
NP_958214.1 NC_005344_p38 hypothetical protein phrog_2651 unknown function unknown function -1 26068 26472
NP_958228.1 NC_005344_p52 endonuclease protein phrog_171 NinG/ Rap DNA junction specific endonuclease DNA, RNA and nucleotide metabolism 1 32778 32878
NP_958228.1 NC_005344_p52 endonuclease protein phrog_171 NinG/ Rap DNA junction specific endonuclease DNA, RNA and nucleotide metabolism 1 34131 34641
NP_958230.1 NC_005344_p54 IS911 transposase orfA phrog_151 transposase integration and excision -1 33753 34055
NP_958211.1 NC_005344_p35 restriction alleviation protein phrog_1055 restriction alleviation ral DNA, RNA and nucleotide metabolism -1 24804 25004
NP_958217.1 NC_005344_p41 Phage HK97 53 protein homolog phrog_1331 unknown function unknown function 1 27852 28013
NP_958213.1 NC_005344_p37 transcription antitermination protein phrog_271 anti-termination protein N-like transcription regulation -1 25275 25607
NP_958242.1 NC_005344_p66 similar to phage HK620 gene HKbN protein phrog_3546 unknown function unknown function 1 38845 39036
NP_958224.1 NC_005344_p48 similar to phage HK022 gene 60 protein phrog_8458 flagellar protein moron, auxiliary metabolic gene and host takeover 1 31240 31494
NP_958187.1 NC_005344_p11 DNA injection protein phrog_598 DNA ejection DNA, RNA and nucleotide metabolism 1 9560 10252
NP_958201.1 NC_005344_p25 RecBC inhibitor phrog_656 abc2 anti-RecBCD moron, auxiliary metabolic gene and host takeover -1 20638 20934
NP_958220.1 NC_005344_p44 similar to phage 21 NinA protein phrog_5907 unknown function unknown function 1 30316 30399
NP_958235.1 NC_005344_p59 holin protein phrog_126 holin/anti-holin lysis 1 36469 36786
NP_958189.1 NC_005344_p13 DNA injection protein phrog_770 DNA transfer protein other 1 11557 13554
NP_958192.1 NC_005344_p16 integrase protein phrog_1 integrase integration and excision -1 16781 17938
NP_958218.1 NC_005344_p42 DNA replication initiation protein phrog_345 replication initiation O-like DNA, RNA and nucleotide metabolism 1 28000 28890
NP_958198.1 NC_005344_p22 similar to Salmonella typhi CT18 plasmid pHCM2 gene 0097c phrog_1239 unknown function unknown function -1 19877 20176
NP_958240.1 NC_005344_p64 hypothetical protein phrog_322 unknown function unknown function 1 38117 38497
NP_958225.1 NC_005344_p49 recombination function protein phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 31475 31915
NP_958221.1 NC_005344_p45 hypothetical protein phrog_5903 unknown function unknown function 1 30392 30718
NP_958231.1 NC_005344_p55 similar to phage lambda ninH protein phrog_268 unknown function unknown function 1 34638 34844
NP_958207.1 NC_005344_p31 host cell division inhibitor phrog_2055 Kil protein for bacterial septation inhibition other -1 22873 23025
NP_958205.1 NC_005344_p29 similar to phage HK97 gene 42 protein phrog_1723 recombinase other -1 22627 22797
NP_958185.1 NC_005344_p9 head completion protein phrog_1030 tail needle knob tail 1 8254 9102
NP_958234.1 NC_005344_p58 holin inhibitor phrog_126 holin/anti-holin lysis 1 36463 36786
NP_958209.1 NC_005344_p33 similar to phage D3 gene Orf53 phrog_1376 unknown function unknown function -1 23166 24134
NP_958219.1 NC_005344_p43 DNA replication initiation protein phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 28880 30316
NP_958215.1 NC_005344_p39 Cro-type repressor protein phrog_3 transcriptional repressor transcription regulation 1 27204 27419
NP_958196.1 NC_005344_p20 hypothetical protein phrog_599 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover -1 18896 19198
NP_958232.1 NC_005344_p56 serine/threonine phosphatase protein phrog_246 NinI-like serine-threonine phosphatase other 1 34822 35493
NP_958210.1 NC_005344_p34 hypothetical protein phrog_3054 unknown function unknown function -1 24323 24745