| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_005355 |
Definition |
Lactobacillus prophage Lj965, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
40190 |
Host Name |
Lactobacillus johnsonii |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
46 |
%GC |
35.14 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_958600.1 | NC_005355_p45 | lysin | phrog_291 | endolysin | lysis | 1 | 38440 | 39372 |
| NP_958570.1 | NC_005355_p15 | replication protein | phrog_10003 | recombinase | other | 1 | 8364 | 9200 |
| NP_958585.1 | NC_005355_p30 | major head protein | phrog_29 | major head protein | head and packaging | 1 | 21722 | 22771 |
| NP_958577.1 | NC_005355_p22 | hypothetical protein | phrog_30330 | unknown function | unknown function | 1 | 14939 | 15535 |
| NP_958584.1 | NC_005355_p29 | hypothetical protein | phrog_909 | major head protein | head and packaging | 1 | 21336 | 21701 |
| NP_958568.1 | NC_005355_p13 | hypothetical protein | phrog_25327 | unknown function | unknown function | 1 | 7085 | 7450 |
| NP_958569.1 | NC_005355_p14 | hypothetical protein | phrog_674 | unknown function | unknown function | 1 | 7462 | 8361 |
| NP_958592.1 | NC_005355_p37 | hypothetical protein | phrog_2066 | unknown function | unknown function | 1 | 25421 | 25714 |
| NP_958599.1 | NC_005355_p44 | holin | phrog_10813 | holin | lysis | 1 | 38100 | 38447 |
| NP_958591.1 | NC_005355_p36 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 24918 | 25328 |
| NP_958594.1 | NC_005355_p39 | hypothetical protein | phrog_1194 | unknown function | unknown function | 1 | 31797 | 32153 |
| NP_958588.1 | NC_005355_p33 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 23441 | 23989 |
| NP_958559.1 | NC_005355_p4 | hypothetical protein | phrog_5059 | unknown function | unknown function | -1 | 2708 | 3493 |
| NP_958567.1 | NC_005355_p12 | hypothetical protein | phrog_14447 | unknown function | unknown function | 1 | 6567 | 6716 |
| NP_958557.1 | NC_005355_p2 | superinfection immunity protein | phrog_4980 | superinfection exclusion | moron, auxiliary metabolic gene and host takeover | -1 | 1450 | 1974 |
| NP_958556.1 | NC_005355_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 119 | 1294 |
| NP_958572.1 | NC_005355_p17 | hypothetical protein | phrog_22112 | unknown function | unknown function | 1 | 9934 | 10218 |
| NP_958566.1 | NC_005355_p11 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 6361 | 6570 |
| NP_958580.1 | NC_005355_p25 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 17719 | 19218 |
| NP_958571.1 | NC_005355_p16 | replication protein | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 9210 | 9944 |
| NP_958582.1 | NC_005355_p27 | minor head protein | phrog_115 | minor head protein | head and packaging | 1 | 19442 | 20524 |
| NP_958579.1 | NC_005355_p24 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 16429 | 17703 |
| NP_958575.1 | NC_005355_p20 | hypothetical protein | phrog_6345 | unknown function | unknown function | 1 | 13504 | 14559 |
| NP_958587.1 | NC_005355_p32 | hypothetical protein | phrog_2168 | unknown function | unknown function | 1 | 23095 | 23448 |
| NP_958560.1 | NC_005355_p5 | hypothetical protein | phrog_17771 | unknown function | unknown function | -1 | 3465 | 3923 |
| NP_958601.1 | NC_005355_p46 | hypothetical protein | phrog_33700 | unknown function | unknown function | 1 | 39798 | 40016 |
| NP_958596.1 | NC_005355_p41 | hypothetical protein | phrog_2566 | unknown function | unknown function | 1 | 37173 | 37433 |
| NP_958578.1 | NC_005355_p23 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 15588 | 16442 |
| NP_958583.1 | NC_005355_p28 | scaffold protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 20679 | 21323 |
| NP_958576.1 | NC_005355_p21 | hypothetical protein | phrog_3136 | unknown function | unknown function | 1 | 14537 | 14917 |
| NP_958558.1 | NC_005355_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2067 | 2597 |
| NP_958565.1 | NC_005355_p10 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 5958 | 6236 |
| NP_958574.1 | NC_005355_p19 | hypothetical protein | phrog_248 | transcriptional activator | transcription regulation | 1 | 11585 | 12067 |
| NP_958564.1 | NC_005355_p9 | antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 5197 | 5946 |
| NP_958593.1 | NC_005355_p38 | putative minor tail protein | phrog_1535 | tail length tape measure protein | tail | 1 | 25714 | 31779 |
| NP_958562.1 | NC_005355_p7 | repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 4430 | 4783 |
| NP_958595.1 | NC_005355_p40 | hypothetical protein | phrog_1330 | tail protein | tail | 1 | 32167 | 37041 |
| NP_958561.1 | NC_005355_p6 | repressor | phrog_87 | metallo-protease | other | -1 | 4004 | 4426 |
| NP_958573.1 | NC_005355_p18 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 10354 | 11190 |
| NP_958590.1 | NC_005355_p35 | major tail protein | phrog_158 | major tail protein | tail | 1 | 24361 | 24840 |
| NP_958598.1 | NC_005355_p43 | hypothetical protein | phrog_6664 | unknown function | unknown function | 1 | 37850 | 38107 |
| NP_958597.1 | NC_005355_p42 | hypothetical protein | phrog_4325 | holin | lysis | 1 | 37433 | 37840 |
| NP_958581.1 | NC_005355_p26 | hypothetical protein | phrog_4478 | peptidase | other | 1 | 19148 | 19435 |
| NP_958589.1 | NC_005355_p34 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 23990 | 24358 |
| NP_958563.1 | NC_005355_p8 | cro repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 4956 | 5159 |
| NP_958586.1 | NC_005355_p31 | hypothetical protein | phrog_132 | head-tail adaptor | connector | 1 | 22781 | 23098 |